Wall clock time and date at job start Tue Mar 31 2020 03:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46870 * 2 1 4 4 C 1.34258 * 125.75231 * 125.00325 * 3 2 1 5 5 C 1.38037 * 107.41916 * 179.97438 * 4 3 2 6 6 C 1.47429 * 126.41885 * 179.73688 * 5 4 3 7 7 O 1.21607 * 119.99685 * 354.78046 * 6 5 4 8 8 N 1.34778 * 120.00189 * 174.77474 * 6 5 4 9 9 C 1.46498 * 119.99891 * 184.58355 * 8 6 5 10 10 H 1.09006 * 109.46919 * 35.20691 * 9 8 6 11 11 C 1.52998 * 109.47211 * 275.20928 * 9 8 6 12 12 C 1.53001 * 109.47288 * 155.20676 * 9 8 6 13 13 C 1.53004 * 109.46832 * 296.85515 * 12 9 8 14 14 H 1.09003 * 109.47014 * 54.56833 * 13 12 9 15 15 C 1.52998 * 109.47070 * 294.56480 * 13 12 9 16 16 N 1.46502 * 109.46961 * 174.56308 * 13 12 9 17 17 C 1.36932 * 120.00145 * 205.75531 * 16 13 12 18 18 H 1.07994 * 119.99988 * 4.92869 * 17 16 13 19 19 C 1.38810 * 120.00176 * 184.92812 * 17 16 13 20 20 N 1.31620 * 120.00470 * 183.97366 * 19 17 16 21 21 Si 1.86806 * 119.99973 * 3.97859 * 19 17 16 22 22 H 1.48499 * 109.47306 * 92.54230 * 21 19 17 23 23 H 1.48497 * 109.47280 * 212.54905 * 21 19 17 24 24 H 1.48502 * 109.46853 * 332.54229 * 21 19 17 25 25 C 1.41292 * 107.16765 * 0.02562 * 5 4 3 26 26 N 1.30443 * 108.02322 * 359.97438 * 25 5 4 27 27 H 1.08999 * 109.46778 * 299.99527 * 1 2 3 28 28 H 1.09000 * 109.47725 * 59.99847 * 1 2 3 29 29 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46778 * 240.00473 * 2 1 3 31 31 H 1.09000 * 109.47725 * 120.00153 * 2 1 3 32 32 H 1.08009 * 126.29058 * 0.02562 * 4 3 2 33 33 H 0.96994 * 120.00247 * 4.58355 * 8 6 5 34 34 H 1.08994 * 109.47409 * 59.99686 * 11 9 8 35 35 H 1.08999 * 109.47644 * 180.02562 * 11 9 8 36 36 H 1.09006 * 109.46986 * 299.99722 * 11 9 8 37 37 H 1.08992 * 109.46834 * 56.85296 * 12 9 8 38 38 H 1.08994 * 109.47287 * 176.85529 * 12 9 8 39 39 H 1.08999 * 109.47523 * 60.00314 * 15 13 12 40 40 H 1.09008 * 109.46701 * 180.02562 * 15 13 12 41 41 H 1.08995 * 109.47245 * 299.99842 * 15 13 12 42 42 H 0.97005 * 119.99555 * 25.76052 * 16 13 12 43 43 H 0.96992 * 120.00208 * 180.02562 * 20 19 17 44 44 H 1.08000 * 125.98843 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8690 1.9126 0.8925 5 6 3.0713 3.2308 0.5365 6 6 3.9287 4.2048 1.2364 7 8 4.4670 3.8990 2.2832 8 7 4.1161 5.4339 0.7162 9 6 5.0462 6.3666 1.3573 10 1 5.8911 5.8131 1.7671 11 6 4.3274 7.1090 2.4855 12 6 5.5507 7.3753 0.3233 13 6 6.3371 6.6407 -0.7643 14 1 5.7193 5.8482 -1.1868 15 6 7.6020 6.0319 -0.1559 16 7 6.7090 7.5854 -1.8204 17 6 6.9295 7.1357 -3.0948 18 1 6.7523 6.0989 -3.3398 19 6 7.3808 8.0123 -4.0719 20 7 7.5180 7.5994 -5.3141 21 14 7.7934 9.7783 -3.6238 22 1 9.2375 9.8806 -3.2931 23 1 7.4848 10.6658 -4.7736 24 1 6.9858 10.1923 -2.4483 25 6 2.2976 3.4739 -0.6205 26 7 1.6768 2.3692 -0.9302 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.3140 1.4021 1.7339 33 1 3.6351 5.7009 -0.0827 34 1 3.9680 6.3905 3.2221 35 1 5.0192 7.8034 2.9623 36 1 3.4825 7.6626 2.0757 37 1 4.7016 7.8895 -0.1268 38 1 6.1988 8.1029 0.8117 39 1 7.3254 5.3290 0.6299 40 1 8.1625 5.5090 -0.9309 41 1 8.2197 6.8244 0.2665 42 1 6.7991 8.5296 -1.6168 43 1 7.8337 8.2119 -5.9967 44 1 2.2317 4.4102 -1.1547 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133998842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:45 Heat of formation + Delta-G solvation = 16.928845 kcal Electronic energy + Delta-G solvation = -23610.426379 eV Core-core repulsion = 20177.559869 eV Total energy + Delta-G solvation = -3432.866509 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.34799 -40.45096 -38.31766 -36.16948 -35.44994 -34.01621 -32.43964 -31.51606 -30.84069 -30.06695 -27.59188 -25.58959 -25.01336 -24.06868 -22.35422 -21.62684 -21.29773 -20.91706 -19.65552 -18.82209 -17.16784 -16.98600 -16.60776 -16.54719 -16.10437 -15.66683 -15.35147 -15.26848 -15.04458 -14.70740 -14.53446 -14.35330 -13.92000 -13.75356 -13.47450 -13.38193 -13.21088 -12.99319 -12.93785 -12.81871 -12.67328 -12.44569 -12.21714 -12.00831 -11.86076 -11.81208 -11.55874 -11.42842 -10.96768 -10.81297 -10.57847 -10.04626 -9.59039 -9.27708 -7.98204 -5.31022 0.57943 1.18652 1.39999 1.43002 1.45247 1.51943 2.38606 2.52346 2.55829 3.33463 3.45851 3.52422 3.81007 4.01225 4.04496 4.07610 4.13505 4.21625 4.28247 4.35663 4.43640 4.50944 4.63139 4.69011 4.72962 4.80420 4.87792 4.90008 4.96322 5.01309 5.09223 5.17231 5.21405 5.38409 5.42468 5.44327 5.54422 5.71205 5.83051 5.91853 6.26226 6.52279 6.71539 7.13712 7.37515 7.90234 8.10596 9.23640 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.003554 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.513283 B = 7875.908218 C = 9013.956986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.114 3.886 3 N -0.358 5.358 4 C 0.131 3.869 5 C -0.317 4.317 6 C 0.597 3.403 7 O -0.589 6.589 8 N -0.712 5.712 9 C 0.151 3.849 10 H 0.077 0.923 11 C -0.154 4.154 12 C -0.123 4.123 13 C 0.172 3.828 14 H 0.043 0.957 15 C -0.159 4.159 16 N -0.751 5.751 17 C -0.223 4.223 18 H 0.051 0.949 19 C -0.068 4.068 20 N -0.987 5.987 21 Si 0.958 3.042 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.244 1.244 25 C 0.080 3.920 26 N -0.323 5.323 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.132 0.868 32 H 0.210 0.790 33 H 0.407 0.593 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.055 0.945 42 H 0.367 0.633 43 H 0.256 0.744 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.125 -10.963 17.656 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.137 5.137 4 C -0.022 4.022 5 C -0.332 4.332 6 C 0.386 3.614 7 O -0.471 6.471 8 N -0.362 5.362 9 C 0.046 3.954 10 H 0.095 0.905 11 C -0.212 4.212 12 C -0.161 4.161 13 C 0.064 3.936 14 H 0.061 0.939 15 C -0.219 4.219 16 N -0.395 5.395 17 C -0.354 4.354 18 H 0.069 0.931 19 C -0.259 4.259 20 N -0.638 5.638 21 Si 0.786 3.214 22 H -0.213 1.213 23 H -0.226 1.226 24 H -0.168 1.168 25 C -0.107 4.107 26 N -0.143 5.143 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.150 0.850 32 H 0.226 0.774 33 H 0.243 0.757 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.201 0.799 43 H 0.065 0.935 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -14.606 -12.050 17.380 25.701 hybrid contribution 0.932 1.429 -0.423 1.758 sum -13.673 -10.620 16.957 24.234 Atomic orbital electron populations 1.22015 0.93101 1.04279 1.02362 1.22253 0.96721 0.75236 1.06236 1.48997 1.33689 1.11423 1.19579 1.23350 0.90998 0.93285 0.94558 1.20324 1.12636 0.96218 1.04032 1.17398 0.79314 0.81375 0.83306 1.90713 1.52424 1.79437 1.24522 1.45853 1.45398 1.13745 1.31238 1.20936 0.91932 0.89652 0.92862 0.90486 1.22093 1.01337 1.00168 0.97584 1.22091 1.00614 0.97913 0.95494 1.20372 0.93786 0.91675 0.87717 0.93867 1.22340 0.99519 1.00509 0.99517 1.42847 1.84711 1.06140 1.05777 1.18988 1.35016 0.95158 0.86287 0.93090 1.25535 1.02412 1.02744 0.95207 1.69900 1.55081 1.36888 1.01958 0.85354 0.78321 0.80123 0.77598 1.21264 1.22596 1.16799 1.24383 0.93598 0.98095 0.94652 1.77102 1.24964 0.97776 1.14442 0.92619 0.92998 0.87943 0.88619 0.85019 0.77381 0.75713 0.93331 0.90276 0.91511 0.90298 0.89153 0.92191 0.95603 0.92638 0.79900 0.93525 0.77994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 10.09 71.98 0.73 -0.85 16 2 C 0.11 1.19 7.21 86.38 0.62 1.81 16 3 N -0.36 -6.87 3.65 -346.28 -1.26 -8.13 16 4 C 0.13 2.65 11.25 84.27 0.95 3.59 16 5 C -0.32 -7.80 6.12 -20.15 -0.12 -7.93 16 6 C 0.60 16.62 7.77 86.66 0.67 17.30 16 7 O -0.59 -19.60 16.57 -4.05 -0.07 -19.67 16 8 N -0.71 -17.59 4.36 -445.79 -1.95 -19.53 16 9 C 0.15 3.69 2.39 44.99 0.11 3.80 16 10 H 0.08 2.14 5.95 -2.38 -0.01 2.13 16 11 C -0.15 -3.15 9.48 71.98 0.68 -2.46 16 12 C -0.12 -3.22 4.42 30.60 0.14 -3.09 16 13 C 0.17 6.19 2.91 44.99 0.13 6.32 16 14 H 0.04 1.67 7.44 -2.39 -0.02 1.65 16 15 C -0.16 -5.60 9.27 71.98 0.67 -4.93 16 16 N -0.75 -33.71 4.90 -322.94 -1.58 -35.29 16 17 C -0.22 -12.60 10.41 84.03 0.87 -11.72 16 18 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 20 N -0.99 -63.63 13.97 21.65 0.30 -63.32 16 21 Si 0.96 45.16 27.94 68.60 1.92 47.08 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.24 -9.97 6.24 99.48 0.62 -9.35 16 25 C 0.08 1.89 11.51 85.65 0.99 2.88 16 26 N -0.32 -7.94 12.33 -56.28 -0.69 -8.64 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.13 0.51 8.06 -2.39 -0.02 0.49 16 32 H 0.21 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.41 8.95 7.53 -92.71 -0.70 8.25 16 34 H 0.05 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 1.88 6.51 -2.39 -0.02 1.87 16 40 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.37 15.62 5.57 -92.70 -0.52 15.11 16 43 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.20 3.87 7.52 -2.91 -0.02 3.85 16 Total: -1.00 -77.54 365.02 3.27 -74.28 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: -0.30 Total: 32.05 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 6.90 Total: 1.18 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -5.18 Total: -134.91 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.07 Total: -19.67 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.92 Total: 47.08 kcal Total: -77.54 3.27 -74.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133998842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.205 kcal (2) G-P(sol) polarization free energy of solvation -77.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds