Wall clock time and date at job start Tue Mar 31 2020 03:39:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46498 * 109.46977 * 2 1
4 4 C 1.35400 * 126.44236 * 265.02507 * 3 2 1
5 5 C 1.35556 * 107.15970 * 180.23272 * 4 3 2
6 6 N 1.33098 * 108.35279 * 359.56874 * 5 4 3
7 7 C 1.31621 * 109.09307 * 0.44198 * 6 5 4
8 8 C 1.47403 * 125.86298 * 179.76938 * 7 6 5
9 9 O 1.21610 * 120.00104 * 179.97438 * 8 7 6
10 10 N 1.34781 * 120.00315 * 359.94827 * 8 7 6
11 11 C 1.46502 * 120.00089 * 180.02562 * 10 8 7
12 12 H 1.09007 * 109.46673 * 35.00612 * 11 10 8
13 13 C 1.52999 * 109.47266 * 275.00747 * 11 10 8
14 14 C 1.52998 * 109.46671 * 155.00331 * 11 10 8
15 15 C 1.52999 * 109.47211 * 294.99895 * 14 11 10
16 16 H 1.08996 * 109.47252 * 55.00722 * 15 14 11
17 17 C 1.53006 * 109.47157 * 175.00289 * 15 14 11
18 18 N 1.46499 * 109.47497 * 295.00284 * 15 14 11
19 19 C 1.36939 * 120.00021 * 155.00316 * 18 15 14
20 20 H 1.07997 * 120.00022 * 359.97438 * 19 18 15
21 21 C 1.38809 * 119.99953 * 180.02562 * 19 18 15
22 22 N 1.31624 * 119.99813 * 179.97438 * 21 19 18
23 23 Si 1.86798 * 120.00118 * 359.97438 * 21 19 18
24 24 H 1.48504 * 109.47249 * 90.00182 * 23 21 19
25 25 H 1.48492 * 109.47188 * 210.00034 * 23 21 19
26 26 H 1.48499 * 109.47006 * 330.00152 * 23 21 19
27 27 H 1.09001 * 109.47331 * 59.99648 * 1 2 3
28 28 H 1.08999 * 109.47287 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.46648 * 299.99686 * 1 2 3
30 30 H 1.08999 * 109.46648 * 240.00314 * 2 1 3
31 31 H 1.08994 * 109.46724 * 120.00971 * 2 1 3
32 32 H 1.08002 * 126.41646 * 359.96517 * 4 3 2
33 33 H 1.08002 * 125.82375 * 179.73554 * 5 4 3
34 34 H 0.96997 * 119.99614 * 0.02562 * 10 8 7
35 35 H 1.08991 * 109.47057 * 59.99832 * 13 11 10
36 36 H 1.09004 * 109.46544 * 180.02562 * 13 11 10
37 37 H 1.09002 * 109.46743 * 299.99431 * 13 11 10
38 38 H 1.08998 * 109.47285 * 55.00587 * 14 11 10
39 39 H 1.09003 * 109.46839 * 175.00316 * 14 11 10
40 40 H 1.09005 * 109.46920 * 60.00015 * 17 15 14
41 41 H 1.09001 * 109.47282 * 180.02562 * 17 15 14
42 42 H 1.09007 * 109.46861 * 300.00184 * 17 15 14
43 43 H 0.96995 * 120.00026 * 334.99751 * 18 15 14
44 44 H 0.97002 * 119.99492 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3755 2.1080 -1.0851
5 6 2.7703 3.3256 -0.6387
6 7 2.6483 3.3458 0.6865
7 6 2.1984 2.1784 1.0953
8 6 1.9332 1.7969 2.4942
9 8 1.5161 0.6841 2.7524
10 7 2.1535 2.6811 3.4873
11 6 1.8904 2.3017 4.8777
12 1 2.1329 1.2483 5.0189
13 6 0.4123 2.5322 5.1984
14 6 2.7537 3.1532 5.8107
15 6 4.2306 2.8301 5.5754
16 1 4.4683 2.9646 4.5202
17 6 5.0982 3.7681 6.4171
18 7 4.4946 1.4421 5.9625
19 6 5.5428 0.7624 5.4017
20 1 6.1747 1.2495 4.6738
21 6 5.7926 -0.5530 5.7681
22 7 6.7999 -1.2064 5.2287
23 14 4.6993 -1.3957 7.0265
24 1 3.5700 -2.0649 6.3321
25 1 5.4910 -2.4070 7.7718
26 1 4.1677 -0.3853 7.9760
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3632 0.5138 0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5140 0.8899
32 1 2.3543 1.7779 -2.1132
33 1 3.1212 4.1411 -1.2537
34 1 2.4862 3.5687 3.2814
35 1 -0.2026 1.9256 4.5337
36 1 0.2168 2.2503 6.2330
37 1 0.1700 3.5856 5.0572
38 1 2.5759 4.2092 5.6073
39 1 2.4944 2.9340 6.8465
40 1 4.8605 3.6337 7.4724
41 1 6.1504 3.5382 6.2491
42 1 4.9018 4.8009 6.1291
43 1 3.9269 1.0045 6.6160
44 1 6.9747 -2.1254 5.4850
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001134223815.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:39:13
Heat of formation + Delta-G solvation = 29.864169 kcal
Electronic energy + Delta-G solvation = -24640.908834 eV
Core-core repulsion = 21208.603243 eV
Total energy + Delta-G solvation = -3432.305591 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-42.24057 -39.31345 -36.93139 -35.20993 -34.40770 -32.15338 -31.16791 -30.27561
-29.36067 -29.05196 -26.38455 -24.35123 -23.40145 -23.08074 -21.53412 -20.73645
-19.89456 -19.76276 -17.87059 -17.44501 -16.30535 -15.99069 -15.60317 -14.84201
-14.63539 -14.45248 -14.19850 -13.88718 -13.72717 -13.56492 -13.50137 -13.02547
-12.69241 -12.62829 -12.37473 -12.22792 -12.06647 -11.93778 -11.67410 -11.46619
-11.19981 -10.88328 -10.61300 -10.47823 -10.25320 -10.19803 -9.91472 -9.91036
-9.78420 -9.51133 -8.87079 -8.84342 -8.47717 -7.18904 -5.69433 -3.03892
1.48343 2.48158 2.69171 3.42580 3.43751 3.46092 3.50613 3.63476
4.45071 4.58912 4.66207 4.75631 4.88610 5.02258 5.16770 5.23869
5.28665 5.33632 5.38743 5.52218 5.56020 5.61282 5.65404 5.80628
5.83232 5.91577 5.93367 6.05629 6.19838 6.24093 6.27643 6.37310
6.48975 6.54690 6.59473 6.75350 6.88365 6.92590 7.05372 7.60619
7.94839 8.07198 8.40634 8.49531 9.28542 10.01232 10.20747 11.49317
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.013477 B = 0.005195 C = 0.004734
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2077.124112 B = 5388.174948 C = 5913.218162
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.093 3.907
3 N -0.412 5.412
4 C -0.036 4.036
5 C -0.030 4.030
6 N -0.448 5.448
7 C 0.150 3.850
8 C 0.609 3.391
9 O -0.536 6.536
10 N -0.690 5.690
11 C 0.144 3.856
12 H 0.101 0.899
13 C -0.162 4.162
14 C -0.135 4.135
15 C 0.175 3.825
16 H 0.057 0.943
17 C -0.165 4.165
18 N -0.745 5.745
19 C -0.235 4.235
20 H 0.088 0.912
21 C 0.003 3.997
22 N -0.936 5.936
23 Si 0.881 3.119
24 H -0.284 1.284
25 H -0.293 1.293
26 H -0.277 1.277
27 H 0.056 0.944
28 H 0.077 0.923
29 H 0.067 0.933
30 H 0.091 0.909
31 H 0.114 0.886
32 H 0.180 0.820
33 H 0.175 0.825
34 H 0.408 0.592
35 H 0.057 0.943
36 H 0.065 0.935
37 H 0.054 0.946
38 H 0.069 0.931
39 H 0.076 0.924
40 H 0.044 0.956
41 H 0.056 0.944
42 H 0.038 0.962
43 H 0.359 0.641
44 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.293 8.871 -10.091 19.617
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.028 4.028
3 N -0.092 5.092
4 C -0.174 4.174
5 C -0.183 4.183
6 N -0.170 5.170
7 C -0.110 4.110
8 C 0.392 3.608
9 O -0.412 6.412
10 N -0.341 5.341
11 C 0.040 3.960
12 H 0.119 0.881
13 C -0.220 4.220
14 C -0.173 4.173
15 C 0.065 3.935
16 H 0.075 0.925
17 C -0.225 4.225
18 N -0.389 5.389
19 C -0.365 4.365
20 H 0.105 0.895
21 C -0.192 4.192
22 N -0.585 5.585
23 Si 0.712 3.288
24 H -0.210 1.210
25 H -0.219 1.219
26 H -0.203 1.203
27 H 0.075 0.925
28 H 0.096 0.904
29 H 0.086 0.914
30 H 0.109 0.891
31 H 0.132 0.868
32 H 0.197 0.803
33 H 0.193 0.807
34 H 0.243 0.757
35 H 0.076 0.924
36 H 0.084 0.916
37 H 0.073 0.927
38 H 0.087 0.913
39 H 0.095 0.905
40 H 0.063 0.937
41 H 0.076 0.924
42 H 0.057 0.943
43 H 0.192 0.808
44 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -14.289 8.450 -9.435 19.095
hybrid contribution -0.520 -0.972 0.077 1.105
sum -14.809 7.478 -9.358 19.047
Atomic orbital electron populations
1.22046 0.93700 1.03308 1.02735 1.22150 0.96119 0.78859 1.05719
1.45253 1.45014 1.12823 1.06121 1.22864 1.07321 0.94149 0.93060
1.22371 1.07284 0.97558 0.91115 1.70187 1.15289 1.18991 1.12512
1.22758 1.09546 0.88295 0.90436 1.16386 0.77977 0.84511 0.81913
1.90801 1.46627 1.20352 1.83397 1.45600 1.65869 1.16703 1.05926
1.21083 0.93745 1.01997 0.79147 0.88084 1.22200 0.96436 1.01560
1.01844 1.22222 0.96643 0.99122 0.99345 1.20222 0.90497 0.85186
0.97548 0.92520 1.22410 1.01875 0.97911 1.00283 1.42779 1.35788
1.09646 1.50654 1.19030 1.04451 0.94359 1.18611 0.89450 1.24637
0.98034 0.96690 0.99815 1.69708 1.30913 1.11205 1.46651 0.86593
0.80628 0.79549 0.82064 1.21043 1.21932 1.20348 0.92512 0.90395
0.91376 0.89054 0.86799 0.80315 0.80741 0.75689 0.92422 0.91646
0.92687 0.91266 0.90548 0.93682 0.92447 0.94253 0.80816 0.93255
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.61 10.23 37.16 0.38 -1.23 16
2 C 0.09 1.08 6.18 -4.04 -0.02 1.06 16
3 N -0.41 -5.58 2.76 -114.59 -0.32 -5.90 16
4 C -0.04 -0.39 11.53 -16.94 -0.20 -0.59 16
5 C -0.03 -0.37 11.85 -17.96 -0.21 -0.58 16
6 N -0.45 -6.89 10.90 -11.26 -0.12 -7.01 16
7 C 0.15 2.42 7.78 -154.52 -1.20 1.21 16
8 C 0.61 10.71 7.78 -12.53 -0.10 10.62 16
9 O -0.54 -10.55 14.17 5.27 0.07 -10.47 16
10 N -0.69 -10.88 4.44 -54.88 -0.24 -11.13 16
11 C 0.14 2.26 2.52 -67.93 -0.17 2.09 16
12 H 0.10 1.98 7.05 -51.92 -0.37 1.61 16
13 C -0.16 -2.09 9.48 37.16 0.35 -1.73 16
14 C -0.13 -1.98 4.29 -26.73 -0.11 -2.09 16
15 C 0.17 3.29 2.84 -67.93 -0.19 3.10 16
16 H 0.06 1.15 7.56 -51.93 -0.39 0.76 16
17 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16
18 N -0.75 -17.56 4.30 -53.43 -0.23 -17.79 16
19 C -0.23 -6.71 10.41 -15.06 -0.16 -6.87 16
20 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16
21 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16
22 N -0.94 -30.12 13.97 55.49 0.78 -29.35 16
23 Si 0.88 22.77 27.74 -169.99 -4.71 18.05 16
24 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16
25 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16
26 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16
27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
29 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16
30 H 0.09 0.80 8.13 -51.93 -0.42 0.37 16
31 H 0.11 1.65 6.64 -51.93 -0.34 1.30 16
32 H 0.18 1.25 8.06 -52.49 -0.42 0.82 16
33 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16
34 H 0.41 5.84 8.28 -40.82 -0.34 5.50 16
35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16
39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16
41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
42 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16
43 H 0.36 8.38 5.66 -40.82 -0.23 8.15 16
44 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16
LS Contribution 363.97 15.07 5.48 5.48
Total: -1.00 -34.94 363.97 -7.84 -42.78
By element:
Atomic # 1 Polarization: 20.02 SS G_CDS: -7.17 Total: 12.85 kcal
Atomic # 6 Polarization: 3.86 SS G_CDS: -1.38 Total: 2.48 kcal
Atomic # 7 Polarization: -71.04 SS G_CDS: -0.14 Total: -71.18 kcal
Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.47 kcal
Atomic # 14 Polarization: 22.77 SS G_CDS: -4.71 Total: 18.05 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -34.94 -7.84 -42.78 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001134223815.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.645 kcal
(2) G-P(sol) polarization free energy of solvation -34.943 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.702 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.864 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds