Wall clock time and date at job start Tue Mar 31 2020 03:39:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46498 * 109.46977 * 2 1
4 4 C 1.35400 * 126.44236 * 265.02507 * 3 2 1
5 5 C 1.35556 * 107.15970 * 180.23272 * 4 3 2
6 6 N 1.33098 * 108.35279 * 359.56874 * 5 4 3
7 7 C 1.31621 * 109.09307 * 0.44198 * 6 5 4
8 8 C 1.47403 * 125.86298 * 179.76938 * 7 6 5
9 9 O 1.21610 * 120.00104 * 179.97438 * 8 7 6
10 10 N 1.34781 * 120.00315 * 359.94827 * 8 7 6
11 11 C 1.46502 * 120.00089 * 180.02562 * 10 8 7
12 12 H 1.09007 * 109.46673 * 35.00612 * 11 10 8
13 13 C 1.52999 * 109.47266 * 275.00747 * 11 10 8
14 14 C 1.52998 * 109.46671 * 155.00331 * 11 10 8
15 15 C 1.52999 * 109.47211 * 294.99895 * 14 11 10
16 16 H 1.08996 * 109.47252 * 55.00722 * 15 14 11
17 17 C 1.53006 * 109.47157 * 175.00289 * 15 14 11
18 18 N 1.46499 * 109.47497 * 295.00284 * 15 14 11
19 19 C 1.36939 * 120.00021 * 155.00316 * 18 15 14
20 20 H 1.07997 * 120.00022 * 359.97438 * 19 18 15
21 21 C 1.38809 * 119.99953 * 180.02562 * 19 18 15
22 22 N 1.31624 * 119.99813 * 179.97438 * 21 19 18
23 23 Si 1.86798 * 120.00118 * 359.97438 * 21 19 18
24 24 H 1.48504 * 109.47249 * 90.00182 * 23 21 19
25 25 H 1.48492 * 109.47188 * 210.00034 * 23 21 19
26 26 H 1.48499 * 109.47006 * 330.00152 * 23 21 19
27 27 H 1.09001 * 109.47331 * 59.99648 * 1 2 3
28 28 H 1.08999 * 109.47287 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.46648 * 299.99686 * 1 2 3
30 30 H 1.08999 * 109.46648 * 240.00314 * 2 1 3
31 31 H 1.08994 * 109.46724 * 120.00971 * 2 1 3
32 32 H 1.08002 * 126.41646 * 359.96517 * 4 3 2
33 33 H 1.08002 * 125.82375 * 179.73554 * 5 4 3
34 34 H 0.96997 * 119.99614 * 0.02562 * 10 8 7
35 35 H 1.08991 * 109.47057 * 59.99832 * 13 11 10
36 36 H 1.09004 * 109.46544 * 180.02562 * 13 11 10
37 37 H 1.09002 * 109.46743 * 299.99431 * 13 11 10
38 38 H 1.08998 * 109.47285 * 55.00587 * 14 11 10
39 39 H 1.09003 * 109.46839 * 175.00316 * 14 11 10
40 40 H 1.09005 * 109.46920 * 60.00015 * 17 15 14
41 41 H 1.09001 * 109.47282 * 180.02562 * 17 15 14
42 42 H 1.09007 * 109.46861 * 300.00184 * 17 15 14
43 43 H 0.96995 * 120.00026 * 334.99751 * 18 15 14
44 44 H 0.97002 * 119.99492 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3755 2.1080 -1.0851
5 6 2.7703 3.3256 -0.6387
6 7 2.6483 3.3458 0.6865
7 6 2.1984 2.1784 1.0953
8 6 1.9332 1.7969 2.4942
9 8 1.5161 0.6841 2.7524
10 7 2.1535 2.6811 3.4873
11 6 1.8904 2.3017 4.8777
12 1 2.1329 1.2483 5.0189
13 6 0.4123 2.5322 5.1984
14 6 2.7537 3.1532 5.8107
15 6 4.2306 2.8301 5.5754
16 1 4.4683 2.9646 4.5202
17 6 5.0982 3.7681 6.4171
18 7 4.4946 1.4421 5.9625
19 6 5.5428 0.7624 5.4017
20 1 6.1747 1.2495 4.6738
21 6 5.7926 -0.5530 5.7681
22 7 6.7999 -1.2064 5.2287
23 14 4.6993 -1.3957 7.0265
24 1 3.5700 -2.0649 6.3321
25 1 5.4910 -2.4070 7.7718
26 1 4.1677 -0.3853 7.9760
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3632 0.5138 0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5140 0.8899
32 1 2.3543 1.7779 -2.1132
33 1 3.1212 4.1411 -1.2537
34 1 2.4862 3.5687 3.2814
35 1 -0.2026 1.9256 4.5337
36 1 0.2168 2.2503 6.2330
37 1 0.1700 3.5856 5.0572
38 1 2.5759 4.2092 5.6073
39 1 2.4944 2.9340 6.8465
40 1 4.8605 3.6337 7.4724
41 1 6.1504 3.5382 6.2491
42 1 4.9018 4.8009 6.1291
43 1 3.9269 1.0045 6.6160
44 1 6.9747 -2.1254 5.4850
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001134223815.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:39:13
Heat of formation + Delta-G solvation = 5.447486 kcal
Electronic energy + Delta-G solvation = -24641.967621 eV
Core-core repulsion = 21208.603243 eV
Total energy + Delta-G solvation = -3433.364378 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-43.26338 -40.60835 -38.42305 -36.42236 -35.78340 -34.09708 -32.53125 -31.30515
-31.02423 -30.19359 -27.62825 -25.49711 -25.24480 -24.26447 -22.57335 -22.01821
-21.30429 -21.09898 -19.72615 -18.78833 -17.53520 -17.17359 -16.81049 -16.55375
-15.95772 -15.67305 -15.57819 -15.26905 -14.95879 -14.74605 -14.61798 -14.48390
-14.30931 -14.03507 -13.62260 -13.46659 -13.27064 -13.05258 -12.98453 -12.84804
-12.66856 -12.38580 -12.27818 -12.01710 -11.90369 -11.71713 -11.45995 -11.31633
-11.13776 -10.97720 -10.84180 -10.13096 -9.47908 -9.28132 -8.01976 -5.32614
0.37232 1.32770 1.38747 1.43760 1.46898 1.67627 2.30350 2.44418
2.47573 3.30561 3.35701 3.63879 3.70938 3.78747 3.88869 4.01752
4.06526 4.31415 4.32708 4.40205 4.47821 4.49625 4.64475 4.69894
4.75581 4.78403 4.82456 4.87851 4.98358 5.06934 5.09525 5.16756
5.27273 5.31720 5.35766 5.53826 5.58771 5.68507 5.78746 5.93117
6.22638 6.40403 6.87123 7.10199 7.15776 7.88020 8.05856 9.20443
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.013477 B = 0.005195 C = 0.004734
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2077.124112 B = 5388.174948 C = 5913.218162
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.089 3.911
3 N -0.415 5.415
4 C -0.013 4.013
5 C -0.047 4.047
6 N -0.463 5.463
7 C 0.103 3.897
8 C 0.598 3.402
9 O -0.571 6.571
10 N -0.685 5.685
11 C 0.142 3.858
12 H 0.056 0.944
13 C -0.151 4.151
14 C -0.121 4.121
15 C 0.166 3.834
16 H 0.035 0.965
17 C -0.156 4.156
18 N -0.747 5.747
19 C -0.215 4.215
20 H 0.048 0.952
21 C -0.069 4.069
22 N -0.988 5.988
23 Si 0.951 3.049
24 H -0.289 1.289
25 H -0.296 1.296
26 H -0.245 1.245
27 H 0.076 0.924
28 H 0.093 0.907
29 H 0.037 0.963
30 H 0.127 0.873
31 H 0.076 0.924
32 H 0.227 0.773
33 H 0.206 0.794
34 H 0.414 0.586
35 H 0.040 0.960
36 H 0.081 0.919
37 H 0.078 0.922
38 H 0.108 0.892
39 H 0.094 0.906
40 H 0.055 0.945
41 H 0.024 0.976
42 H 0.076 0.924
43 H 0.363 0.637
44 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.357 10.647 -10.390 22.111
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.032 4.032
3 N -0.095 5.095
4 C -0.152 4.152
5 C -0.201 4.201
6 N -0.186 5.186
7 C -0.155 4.155
8 C 0.383 3.617
9 O -0.450 6.450
10 N -0.336 5.336
11 C 0.038 3.962
12 H 0.075 0.925
13 C -0.209 4.209
14 C -0.159 4.159
15 C 0.059 3.941
16 H 0.053 0.947
17 C -0.216 4.216
18 N -0.391 5.391
19 C -0.346 4.346
20 H 0.066 0.934
21 C -0.259 4.259
22 N -0.640 5.640
23 Si 0.778 3.222
24 H -0.216 1.216
25 H -0.223 1.223
26 H -0.169 1.169
27 H 0.095 0.905
28 H 0.112 0.888
29 H 0.056 0.944
30 H 0.145 0.855
31 H 0.095 0.905
32 H 0.244 0.756
33 H 0.223 0.777
34 H 0.251 0.749
35 H 0.059 0.941
36 H 0.100 0.900
37 H 0.097 0.903
38 H 0.126 0.874
39 H 0.112 0.888
40 H 0.074 0.926
41 H 0.043 0.957
42 H 0.095 0.905
43 H 0.196 0.804
44 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -16.385 10.306 -9.694 21.649
hybrid contribution 0.179 -1.412 -0.025 1.423
sum -16.207 8.895 -9.719 20.886
Atomic orbital electron populations
1.21973 0.92447 1.04210 1.02142 1.22264 0.97165 0.78146 1.05606
1.45498 1.44514 1.13298 1.06202 1.23691 1.04127 0.93190 0.94204
1.23053 1.07476 0.99241 0.90286 1.70118 1.15179 1.18903 1.14398
1.22516 1.12918 0.89612 0.90450 1.16760 0.77581 0.84281 0.83081
1.90764 1.48389 1.21650 1.84153 1.45606 1.65394 1.16711 1.05874
1.21067 0.95988 0.99741 0.79372 0.92524 1.22100 0.93685 1.02789
1.02353 1.22152 0.92721 1.01065 0.99993 1.20483 0.93982 0.83037
0.96625 0.94699 1.22271 0.99288 0.99498 1.00510 1.42777 1.34353
1.11480 1.50441 1.18940 1.04448 0.94351 1.16849 0.93397 1.25450
0.99986 0.97667 1.02819 1.69896 1.33488 1.11493 1.49096 0.85463
0.78211 0.78696 0.79785 1.21552 1.22272 1.16884 0.90488 0.88779
0.94362 0.85466 0.90508 0.75636 0.77687 0.74939 0.94115 0.89977
0.90274 0.87412 0.88753 0.92623 0.95662 0.90481 0.80362 0.93666
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.92 10.23 71.98 0.74 -2.19 16
2 C 0.09 2.05 6.18 86.38 0.53 2.59 16
3 N -0.41 -11.00 2.76 -516.45 -1.42 -12.42 16
4 C -0.01 -0.26 11.53 83.52 0.96 0.70 16
5 C -0.05 -1.07 11.85 83.88 0.99 -0.08 16
6 N -0.46 -14.13 10.90 -189.54 -2.07 -16.19 16
7 C 0.10 3.39 7.78 136.28 1.06 4.45 16
8 C 0.60 22.09 7.78 86.66 0.67 22.77 16
9 O -0.57 -24.00 14.17 -4.06 -0.06 -24.06 16
10 N -0.69 -21.97 4.44 -445.81 -1.98 -23.95 16
11 C 0.14 4.38 2.52 44.99 0.11 4.49 16
12 H 0.06 2.27 7.05 -2.38 -0.02 2.26 16
13 C -0.15 -3.64 9.48 71.98 0.68 -2.95 16
14 C -0.12 -3.24 4.29 30.59 0.13 -3.11 16
15 C 0.17 6.14 2.84 44.99 0.13 6.27 16
16 H 0.03 1.44 7.56 -2.39 -0.02 1.42 16
17 C -0.16 -5.14 9.49 71.98 0.68 -4.46 16
18 N -0.75 -35.32 4.30 -322.94 -1.39 -36.70 16
19 C -0.21 -12.72 10.41 84.03 0.87 -11.85 16
20 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16
21 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16
22 N -0.99 -66.26 13.97 21.65 0.30 -65.96 16
23 Si 0.95 48.00 27.74 68.60 1.90 49.91 16
24 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16
25 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16
26 H -0.24 -10.90 6.52 99.48 0.65 -10.25 16
27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16
29 H 0.04 0.97 7.85 -2.39 -0.02 0.95 16
30 H 0.13 1.94 8.13 -2.39 -0.02 1.92 16
31 H 0.08 2.37 6.64 -2.39 -0.02 2.35 16
32 H 0.23 2.04 8.06 -2.91 -0.02 2.02 16
33 H 0.21 3.09 8.06 -2.91 -0.02 3.07 16
34 H 0.41 11.85 8.28 -92.71 -0.77 11.08 16
35 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16
36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16
37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
38 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16
39 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16
40 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16
41 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16
42 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16
43 H 0.36 16.57 5.66 -92.71 -0.52 16.04 16
44 H 0.25 16.31 8.31 -92.71 -0.77 15.54 16
Total: -1.00 -82.41 363.97 2.98 -79.44
By element:
Atomic # 1 Polarization: 37.43 SS G_CDS: -0.35 Total: 37.08 kcal
Atomic # 6 Polarization: 4.83 SS G_CDS: 8.04 Total: 12.87 kcal
Atomic # 7 Polarization: -148.67 SS G_CDS: -6.55 Total: -155.23 kcal
Atomic # 8 Polarization: -24.00 SS G_CDS: -0.06 Total: -24.06 kcal
Atomic # 14 Polarization: 48.00 SS G_CDS: 1.90 Total: 49.91 kcal
Total: -82.41 2.98 -79.44 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001134223815.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.885 kcal
(2) G-P(sol) polarization free energy of solvation -82.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.470 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.447 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds