Wall clock time and date at job start Tue Mar 31 2020 03:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47065 * 2 1 4 4 C 1.35406 * 126.44274 * 265.13884 * 3 2 1 5 5 C 1.35555 * 107.16346 * 180.24289 * 4 3 2 6 6 N 1.33097 * 108.35197 * 359.77091 * 5 4 3 7 7 C 1.31614 * 109.09184 * 0.02562 * 6 5 4 8 8 C 1.47417 * 125.86218 * 179.97438 * 7 6 5 9 9 O 1.21606 * 119.99794 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99680 * 0.02562 * 8 7 6 11 11 C 1.46496 * 119.99550 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47509 * 324.99724 * 11 10 8 13 13 C 1.52999 * 109.47410 * 85.00095 * 11 10 8 14 14 C 1.52998 * 109.47164 * 205.00192 * 11 10 8 15 15 C 1.52998 * 109.47384 * 64.99625 * 14 11 10 16 16 H 1.09003 * 109.47082 * 305.00221 * 15 14 11 17 17 C 1.52995 * 109.47443 * 185.00170 * 15 14 11 18 18 N 1.46498 * 109.47009 * 65.00045 * 15 14 11 19 19 C 1.36935 * 120.00239 * 204.99963 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 H 1.08997 * 109.47358 * 300.00108 * 1 2 3 28 28 H 1.09000 * 109.46781 * 60.00250 * 1 2 3 29 29 H 1.08998 * 109.47176 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46872 * 240.00089 * 2 1 3 31 31 H 1.09000 * 109.47003 * 120.00252 * 2 1 3 32 32 H 1.08009 * 126.41744 * 359.97438 * 4 3 2 33 33 H 1.08005 * 125.82511 * 179.75468 * 5 4 3 34 34 H 0.96994 * 120.00258 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.47191 * 299.99550 * 13 11 10 36 36 H 1.08996 * 109.47126 * 60.00048 * 13 11 10 37 37 H 1.09004 * 109.47346 * 179.97438 * 13 11 10 38 38 H 1.08997 * 109.46877 * 305.00014 * 14 11 10 39 39 H 1.08999 * 109.47306 * 185.00166 * 14 11 10 40 40 H 1.09004 * 109.47411 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.47329 * 300.00343 * 17 15 14 42 42 H 1.09003 * 109.46933 * 60.00266 * 17 15 14 43 43 H 0.97004 * 119.99747 * 25.00702 * 18 15 14 44 44 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3734 2.1087 -1.0854 5 6 2.7693 3.3259 -0.6389 6 7 2.6542 3.3438 0.6869 7 6 2.1990 2.1783 1.0953 8 6 1.9345 1.7965 2.4943 9 8 1.5131 0.6853 2.7521 10 7 2.1597 2.6791 3.4878 11 6 1.8974 2.2995 4.8781 12 1 1.0298 1.6407 4.9175 13 6 3.1169 1.5713 5.4469 14 6 1.6215 3.5559 5.7065 15 6 0.3313 4.2165 5.2169 16 1 0.4052 4.4091 4.1465 17 6 0.1210 5.5376 5.9594 18 7 -0.8023 3.3252 5.4755 19 6 -1.9364 3.4213 4.7142 20 1 -1.9951 4.1538 3.9227 21 6 -3.0107 2.5771 4.9595 22 7 -2.9370 1.6807 5.9205 23 14 -4.5576 2.7076 3.9205 24 1 -5.5467 1.6980 4.3763 25 1 -5.1366 4.0677 4.0636 26 1 -4.2191 2.4610 2.4958 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3502 1.7793 -2.1137 33 1 3.1189 4.1419 -1.2542 34 1 2.4955 3.5655 3.2821 35 1 3.3134 0.6761 4.8568 36 1 3.9843 2.2300 5.4076 37 1 2.9218 1.2892 6.4816 38 1 2.4516 4.2536 5.5957 39 1 1.5142 3.2827 6.7562 40 1 -0.7980 6.0085 5.6103 41 1 0.0471 5.3450 7.0297 42 1 0.9644 6.2007 5.7669 43 1 -0.7494 2.6671 6.1861 44 1 -2.1337 1.6126 6.4598 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134223817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:17 Heat of formation + Delta-G solvation = 26.326973 kcal Electronic energy + Delta-G solvation = -24723.435613 eV Core-core repulsion = 21290.976638 eV Total energy + Delta-G solvation = -3432.458976 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.26212 -39.29059 -36.88703 -35.20354 -34.44061 -32.32515 -31.10599 -30.21316 -29.21936 -28.25569 -26.35059 -24.31708 -23.44461 -23.13212 -21.55486 -20.76050 -19.87514 -19.79951 -17.79675 -17.29565 -16.30389 -15.81871 -15.72395 -14.83880 -14.72254 -14.28601 -14.13515 -13.93452 -13.79171 -13.53671 -13.43093 -13.13828 -12.97597 -12.64118 -12.13583 -12.09320 -12.04027 -11.66291 -11.64053 -11.36101 -11.00208 -10.71590 -10.45402 -10.42644 -10.22129 -10.04730 -9.92363 -9.89927 -9.78493 -9.08848 -8.84791 -8.82248 -8.49323 -6.93817 -6.00705 -2.99333 1.46742 2.46865 2.67448 3.45421 3.54846 3.58688 3.62181 3.75826 4.44007 4.58241 4.73535 4.75757 4.96394 5.07720 5.19356 5.23727 5.36575 5.39338 5.45650 5.63797 5.64257 5.69520 5.69789 5.85656 5.90328 5.98219 6.10566 6.15486 6.23143 6.27285 6.31444 6.41370 6.53097 6.57399 6.62588 6.78305 6.90483 6.91188 7.07242 7.61034 7.89871 7.94091 8.41856 8.84732 9.32404 10.18490 10.33572 11.47819 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011614 B = 0.005821 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.359581 B = 4809.164359 C = 5970.956166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.412 5.412 4 C -0.036 4.036 5 C -0.031 4.031 6 N -0.449 5.449 7 C 0.150 3.850 8 C 0.607 3.393 9 O -0.534 6.534 10 N -0.690 5.690 11 C 0.146 3.854 12 H 0.104 0.896 13 C -0.161 4.161 14 C -0.132 4.132 15 C 0.175 3.825 16 H 0.049 0.951 17 C -0.164 4.164 18 N -0.731 5.731 19 C -0.322 4.322 20 H 0.060 0.940 21 C -0.045 4.045 22 N -0.945 5.945 23 Si 1.075 2.925 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.298 1.298 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.406 0.594 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.036 0.964 43 H 0.365 0.635 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.460 0.021 -11.233 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.024 4.024 3 N -0.093 5.093 4 C -0.175 4.175 5 C -0.184 4.184 6 N -0.171 5.171 7 C -0.110 4.110 8 C 0.390 3.610 9 O -0.410 6.410 10 N -0.340 5.340 11 C 0.042 3.958 12 H 0.122 0.878 13 C -0.220 4.220 14 C -0.171 4.171 15 C 0.065 3.935 16 H 0.067 0.933 17 C -0.224 4.224 18 N -0.374 5.374 19 C -0.453 4.453 20 H 0.078 0.922 21 C -0.243 4.243 22 N -0.591 5.591 23 Si 0.907 3.093 24 H -0.211 1.211 25 H -0.224 1.224 26 H -0.225 1.225 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.197 0.803 33 H 0.192 0.808 34 H 0.242 0.758 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.199 0.801 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.700 -0.816 -10.865 16.733 hybrid contribution 1.464 0.411 -0.440 1.583 sum 14.164 -0.405 -11.305 18.127 Atomic orbital electron populations 1.22088 0.93151 1.03567 1.03549 1.22128 0.96697 0.78615 1.04988 1.45296 1.44906 1.12954 1.06123 1.22862 1.07348 0.94227 0.93025 1.22372 1.07488 0.97421 0.91115 1.70189 1.15771 1.18522 1.12590 1.22800 1.09363 0.88351 0.90515 1.16403 0.77875 0.84886 0.81841 1.90811 1.45831 1.20906 1.83434 1.45614 1.65616 1.16726 1.06082 1.21080 0.98612 0.97313 0.78793 0.87849 1.22193 0.97971 1.00558 1.01238 1.22191 0.98898 0.96162 0.99846 1.20179 0.86387 0.89596 0.97292 0.93278 1.22423 1.00273 0.99050 1.00664 1.42400 1.13666 1.40868 1.40508 1.19964 0.94098 1.18196 1.13034 0.92163 1.25632 1.01525 0.95850 1.01246 1.70871 1.30236 1.36129 1.21851 0.83308 0.75878 0.75469 0.74679 1.21070 1.22403 1.22530 0.90592 0.92406 0.90317 0.89267 0.87241 0.80314 0.80761 0.75843 0.92477 0.92837 0.91578 0.91643 0.90588 0.92868 0.93703 0.94486 0.80150 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.23 37.16 0.38 -1.73 16 2 C 0.10 1.13 6.18 -4.04 -0.02 1.11 16 3 N -0.41 -5.59 2.76 -114.59 -0.32 -5.91 16 4 C -0.04 -0.40 11.53 -16.93 -0.20 -0.59 16 5 C -0.03 -0.38 11.85 -17.96 -0.21 -0.59 16 6 N -0.45 -6.94 10.89 -11.26 -0.12 -7.07 16 7 C 0.15 2.44 7.79 -154.52 -1.20 1.24 16 8 C 0.61 10.95 7.78 -12.52 -0.10 10.85 16 9 O -0.53 -10.81 14.16 5.27 0.07 -10.74 16 10 N -0.69 -11.34 4.44 -54.89 -0.24 -11.58 16 11 C 0.15 2.43 2.52 -67.93 -0.17 2.26 16 12 H 0.10 2.18 7.05 -51.93 -0.37 1.82 16 13 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 14 C -0.13 -2.09 4.29 -26.73 -0.11 -2.21 16 15 C 0.18 3.49 2.84 -67.93 -0.19 3.29 16 16 H 0.05 1.04 7.56 -51.93 -0.39 0.65 16 17 C -0.16 -3.01 9.49 37.16 0.35 -2.66 16 18 N -0.73 -18.22 4.49 -53.43 -0.24 -18.46 16 19 C -0.32 -9.20 9.93 -15.06 -0.15 -9.35 16 20 H 0.06 1.74 7.83 -52.48 -0.41 1.32 16 21 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 22 N -0.94 -29.73 13.70 55.49 0.76 -28.97 16 23 Si 1.08 26.93 29.92 -169.99 -5.09 21.85 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 27 H 0.08 1.29 7.84 -51.93 -0.41 0.89 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.72 8.13 -51.93 -0.42 0.29 16 31 H 0.11 1.44 6.64 -51.93 -0.34 1.09 16 32 H 0.18 1.23 8.06 -52.48 -0.42 0.80 16 33 H 0.18 1.56 8.06 -52.48 -0.42 1.13 16 34 H 0.41 6.10 8.28 -40.82 -0.34 5.76 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.37 9.43 6.63 -40.82 -0.27 9.16 16 44 H 0.25 7.87 6.77 -40.82 -0.28 7.59 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -34.63 365.36 -8.14 -42.76 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -7.10 Total: 14.31 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.37 Total: -1.70 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -0.16 Total: -71.99 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 26.93 SS G_CDS: -5.09 Total: 21.85 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.63 -8.14 -42.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134223817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.090 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds