Wall clock time and date at job start Tue Mar 31 2020 03:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35368 * 127.24489 * 2 1 4 4 N 1.35034 * 107.22453 * 180.24320 * 3 2 1 5 5 C 1.46502 * 124.88134 * 179.75918 * 4 3 2 6 6 N 1.28466 * 110.23299 * 359.76251 * 4 3 2 7 7 C 1.31811 * 110.07457 * 0.02562 * 6 4 3 8 8 C 1.47706 * 126.51856 * 179.97438 * 7 6 4 9 9 O 1.21574 * 119.99603 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00147 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00009 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46940 * 35.00262 * 11 10 8 13 13 C 1.53001 * 109.47393 * 275.00027 * 11 10 8 14 14 C 1.53004 * 109.46937 * 154.99831 * 11 10 8 15 15 C 1.52995 * 109.47243 * 295.00311 * 14 11 10 16 16 H 1.08994 * 109.47294 * 54.99887 * 15 14 11 17 17 C 1.53006 * 109.47104 * 175.00526 * 15 14 11 18 18 N 1.46505 * 109.47024 * 294.99928 * 15 14 11 19 19 C 1.36931 * 119.99788 * 155.00126 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31617 * 119.99873 * 180.27450 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 0.27770 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99559 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00079 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99901 * 23 21 19 27 27 H 1.08998 * 109.47002 * 270.13819 * 1 2 3 28 28 H 1.08999 * 109.47602 * 30.14090 * 1 2 3 29 29 H 1.09003 * 109.47045 * 150.14438 * 1 2 3 30 30 H 1.08000 * 126.39034 * 0.04040 * 3 2 1 31 31 H 1.09004 * 109.47550 * 269.97632 * 5 4 3 32 32 H 1.08994 * 109.47242 * 29.98109 * 5 4 3 33 33 H 1.09004 * 109.46618 * 149.97625 * 5 4 3 34 34 H 0.97001 * 120.00253 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.46844 * 300.00271 * 13 11 10 36 36 H 1.08998 * 109.47096 * 59.99712 * 13 11 10 37 37 H 1.09003 * 109.46930 * 180.02562 * 13 11 10 38 38 H 1.09003 * 109.47011 * 174.99909 * 14 11 10 39 39 H 1.09002 * 109.46836 * 55.00406 * 14 11 10 40 40 H 1.08994 * 109.47567 * 59.99528 * 17 15 14 41 41 H 1.08991 * 109.47054 * 180.02562 * 17 15 14 42 42 H 1.09004 * 109.46242 * 299.99533 * 17 15 14 43 43 H 0.97000 * 119.99792 * 334.99921 * 18 15 14 44 44 H 0.97000 * 120.00553 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 -0.0055 5 6 4.7936 1.4577 -0.0124 6 7 3.5998 -0.6693 -0.0038 7 6 2.3634 -1.1264 0.0022 8 6 1.9506 -2.5446 0.0053 9 8 0.7698 -2.8338 0.0104 10 7 2.8828 -3.5178 0.0025 11 6 2.4733 -4.9244 0.0062 12 1 1.5610 -5.0387 -0.5791 13 6 2.2164 -5.3771 1.4450 14 6 3.5834 -5.7803 -0.6072 15 6 3.7548 -5.4125 -2.0824 16 1 3.9329 -4.3409 -2.1713 17 6 4.9455 -6.1775 -2.6637 18 7 2.5393 -5.7682 -2.8188 19 6 2.2256 -5.1129 -3.9795 20 1 2.8744 -4.3342 -4.3523 21 6 1.0768 -5.4540 -4.6803 22 7 0.7781 -4.8279 -5.7988 23 14 -0.0450 -6.8014 -4.0359 24 1 -1.0680 -6.2068 -3.1386 25 1 -0.7175 -7.4733 -5.1767 26 1 0.7588 -7.7954 -3.2800 27 1 -0.3633 0.0025 1.0276 28 1 -0.3634 0.8887 -0.5160 29 1 -0.3633 -0.8913 -0.5116 30 1 2.0220 2.1138 0.0006 31 1 5.0862 1.6649 -1.0418 32 1 4.5815 2.3955 0.5008 33 1 5.6049 0.9392 0.4986 34 1 3.8250 -3.2870 -0.0019 35 1 3.1288 -5.2627 2.0303 36 1 1.4256 -4.7673 1.8820 37 1 1.9121 -6.4238 1.4477 38 1 3.3176 -6.8342 -0.5240 39 1 4.5178 -5.5983 -0.0764 40 1 4.7674 -7.2491 -2.5748 41 1 5.0679 -5.9151 -3.7145 42 1 5.8498 -5.9127 -2.1157 43 1 1.9568 -6.4679 -2.4842 44 1 -0.0247 -5.0658 -6.2884 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134334763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:42 Heat of formation + Delta-G solvation = 47.327558 kcal Electronic energy + Delta-G solvation = -24414.021551 eV Core-core repulsion = 20982.473229 eV Total energy + Delta-G solvation = -3431.548322 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.60543 -39.23751 -36.84583 -34.50610 -33.86350 -32.29689 -31.78522 -30.54003 -29.14837 -28.15236 -26.54006 -26.27543 -23.31492 -22.88712 -21.03833 -20.48755 -19.89521 -19.67741 -17.73531 -17.33971 -16.33821 -16.27702 -15.75693 -14.75306 -14.45084 -14.21958 -13.87678 -13.67431 -13.49164 -13.38287 -13.13323 -12.87419 -12.64229 -12.56343 -12.44426 -12.31304 -12.00254 -11.94787 -11.89947 -11.61846 -11.13912 -10.83227 -10.71984 -10.57415 -10.39620 -10.20674 -9.86913 -9.60110 -9.46866 -9.19405 -8.81166 -8.73385 -8.55636 -7.14450 -5.65043 -2.99327 1.72962 2.18451 2.43290 3.47248 3.51058 3.52073 3.55990 3.78020 4.29171 4.71214 4.73157 4.82255 4.88814 5.08058 5.09480 5.29481 5.34501 5.36243 5.44759 5.61758 5.63602 5.67123 5.86123 5.90491 5.92602 5.97026 6.09207 6.10131 6.26907 6.30419 6.33609 6.40390 6.51696 6.57672 6.66911 6.77456 6.86341 6.95462 7.07318 7.77090 8.05550 8.10878 8.53833 8.63909 9.32862 10.05736 10.25260 11.53815 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.004907 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.965699 B = 5704.436300 C = 6130.216964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.143 4.143 3 C -0.029 4.029 4 N -0.288 5.288 5 C 0.089 3.911 6 N -0.262 5.262 7 C -0.008 4.008 8 C 0.606 3.394 9 O -0.526 6.526 10 N -0.704 5.704 11 C 0.143 3.857 12 H 0.100 0.900 13 C -0.162 4.162 14 C -0.134 4.134 15 C 0.176 3.824 16 H 0.055 0.945 17 C -0.165 4.165 18 N -0.745 5.745 19 C -0.235 4.235 20 H 0.087 0.913 21 C 0.005 3.995 22 N -0.937 5.937 23 Si 0.881 3.119 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.278 1.278 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.179 0.821 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.401 0.599 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.359 0.641 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.421 11.031 16.799 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.153 4.153 3 C -0.171 4.171 4 N -0.076 5.076 5 C -0.051 4.051 6 N -0.099 5.099 7 C -0.169 4.169 8 C 0.390 3.610 9 O -0.400 6.400 10 N -0.355 5.355 11 C 0.039 3.961 12 H 0.118 0.882 13 C -0.220 4.220 14 C -0.173 4.173 15 C 0.066 3.934 16 H 0.073 0.927 17 C -0.225 4.225 18 N -0.388 5.388 19 C -0.365 4.365 20 H 0.105 0.895 21 C -0.191 4.191 22 N -0.585 5.585 23 Si 0.712 3.288 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.204 1.204 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.196 0.804 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.235 0.765 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.192 0.808 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.788 10.696 16.594 21.610 hybrid contribution -0.998 -0.416 0.174 1.096 sum 7.789 10.280 16.768 21.154 Atomic orbital electron populations 1.20186 0.88113 1.03407 1.02039 1.20402 0.97542 0.90491 1.06851 1.22560 0.83719 1.00410 1.10415 1.45205 1.06951 1.03798 1.51612 1.22125 0.84894 0.93646 1.04447 1.73466 1.23371 0.93646 1.19367 1.21952 0.89325 0.95297 1.10309 1.16784 0.85563 0.82427 0.76228 1.90772 1.16863 1.82488 1.49892 1.45778 1.09460 1.05863 1.74407 1.21022 0.99937 0.79285 0.95856 0.88165 1.22198 1.01552 1.01411 0.96839 1.22212 0.97759 0.99819 0.97485 1.20203 0.87142 0.97647 0.88372 0.92657 1.22414 0.97947 1.00491 1.01627 1.42768 1.24589 1.44063 1.27392 1.19010 1.05923 1.14167 0.97386 0.89541 1.24625 0.98119 0.99337 0.96991 1.69699 1.27324 1.44395 1.17087 0.86592 0.81620 0.82644 0.77985 1.20874 1.21965 1.20396 0.91722 0.92123 0.89515 0.80375 0.89733 0.88852 0.88675 0.76496 0.92930 0.92321 0.91828 0.90705 0.91531 0.93666 0.92497 0.94393 0.80777 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 9.92 36.00 0.36 -0.74 16 2 C -0.14 -2.12 6.25 -104.40 -0.65 -2.77 16 3 C -0.03 -0.33 11.40 -17.17 -0.20 -0.52 16 4 N -0.29 -3.30 3.70 -68.12 -0.25 -3.55 16 5 C 0.09 0.53 11.31 59.85 0.68 1.21 16 6 N -0.26 -3.87 11.67 33.42 0.39 -3.48 16 7 C -0.01 -0.14 7.13 -82.77 -0.59 -0.73 16 8 C 0.61 11.39 7.79 -12.40 -0.10 11.29 16 9 O -0.53 -11.42 14.78 5.30 0.08 -11.34 16 10 N -0.70 -11.61 4.44 -54.79 -0.24 -11.85 16 11 C 0.14 2.36 2.52 -67.93 -0.17 2.19 16 12 H 0.10 2.07 7.05 -51.93 -0.37 1.71 16 13 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 14 C -0.13 -2.05 4.29 -26.73 -0.11 -2.16 16 15 C 0.18 3.39 2.84 -67.93 -0.19 3.20 16 16 H 0.06 1.14 7.56 -51.93 -0.39 0.75 16 17 C -0.16 -2.91 9.49 37.16 0.35 -2.55 16 18 N -0.74 -17.96 4.30 -53.42 -0.23 -18.19 16 19 C -0.23 -6.84 10.41 -15.06 -0.16 -6.99 16 20 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 22 N -0.94 -30.53 13.97 55.49 0.78 -29.75 16 23 Si 0.88 23.19 27.74 -169.99 -4.72 18.48 16 24 H -0.28 -7.53 7.11 56.52 0.40 -7.12 16 25 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 26 H -0.28 -6.82 6.51 56.52 0.37 -6.45 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.46 6.72 -51.93 -0.35 1.11 16 30 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.28 8.13 -51.93 -0.42 -0.14 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.40 5.84 8.33 -40.82 -0.34 5.50 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.36 8.60 5.66 -40.82 -0.23 8.37 16 44 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 LS Contribution 365.24 15.07 5.50 5.50 Total: -1.00 -36.99 365.24 -6.41 -43.40 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -7.19 Total: 11.19 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.53 Total: -0.41 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: 0.44 Total: -66.82 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.72 Total: 18.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.99 -6.41 -43.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134334763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.726 kcal (2) G-P(sol) polarization free energy of solvation -36.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds