Wall clock time and date at job start Tue Mar 31 2020 03:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35368 * 127.24489 * 2 1 4 4 N 1.35034 * 107.22453 * 180.24320 * 3 2 1 5 5 C 1.46502 * 124.88134 * 179.75918 * 4 3 2 6 6 N 1.28466 * 110.23299 * 359.76251 * 4 3 2 7 7 C 1.31811 * 110.07457 * 0.02562 * 6 4 3 8 8 C 1.47706 * 126.51856 * 179.97438 * 7 6 4 9 9 O 1.21574 * 119.99603 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00147 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00009 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46940 * 35.00262 * 11 10 8 13 13 C 1.53001 * 109.47393 * 275.00027 * 11 10 8 14 14 C 1.53004 * 109.46937 * 154.99831 * 11 10 8 15 15 C 1.52995 * 109.47243 * 295.00311 * 14 11 10 16 16 H 1.08994 * 109.47294 * 54.99887 * 15 14 11 17 17 C 1.53006 * 109.47104 * 175.00526 * 15 14 11 18 18 N 1.46505 * 109.47024 * 294.99928 * 15 14 11 19 19 C 1.36931 * 119.99788 * 155.00126 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31617 * 119.99873 * 180.27450 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 0.27770 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99559 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00079 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99901 * 23 21 19 27 27 H 1.08998 * 109.47002 * 270.13819 * 1 2 3 28 28 H 1.08999 * 109.47602 * 30.14090 * 1 2 3 29 29 H 1.09003 * 109.47045 * 150.14438 * 1 2 3 30 30 H 1.08000 * 126.39034 * 0.04040 * 3 2 1 31 31 H 1.09004 * 109.47550 * 269.97632 * 5 4 3 32 32 H 1.08994 * 109.47242 * 29.98109 * 5 4 3 33 33 H 1.09004 * 109.46618 * 149.97625 * 5 4 3 34 34 H 0.97001 * 120.00253 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.46844 * 300.00271 * 13 11 10 36 36 H 1.08998 * 109.47096 * 59.99712 * 13 11 10 37 37 H 1.09003 * 109.46930 * 180.02562 * 13 11 10 38 38 H 1.09003 * 109.47011 * 174.99909 * 14 11 10 39 39 H 1.09002 * 109.46836 * 55.00406 * 14 11 10 40 40 H 1.08994 * 109.47567 * 59.99528 * 17 15 14 41 41 H 1.08991 * 109.47054 * 180.02562 * 17 15 14 42 42 H 1.09004 * 109.46242 * 299.99533 * 17 15 14 43 43 H 0.97000 * 119.99792 * 334.99921 * 18 15 14 44 44 H 0.97000 * 120.00553 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 -0.0055 5 6 4.7936 1.4577 -0.0124 6 7 3.5998 -0.6693 -0.0038 7 6 2.3634 -1.1264 0.0022 8 6 1.9506 -2.5446 0.0053 9 8 0.7698 -2.8338 0.0104 10 7 2.8828 -3.5178 0.0025 11 6 2.4733 -4.9244 0.0062 12 1 1.5610 -5.0387 -0.5791 13 6 2.2164 -5.3771 1.4450 14 6 3.5834 -5.7803 -0.6072 15 6 3.7548 -5.4125 -2.0824 16 1 3.9329 -4.3409 -2.1713 17 6 4.9455 -6.1775 -2.6637 18 7 2.5393 -5.7682 -2.8188 19 6 2.2256 -5.1129 -3.9795 20 1 2.8744 -4.3342 -4.3523 21 6 1.0768 -5.4540 -4.6803 22 7 0.7781 -4.8279 -5.7988 23 14 -0.0450 -6.8014 -4.0359 24 1 -1.0680 -6.2068 -3.1386 25 1 -0.7175 -7.4733 -5.1767 26 1 0.7588 -7.7954 -3.2800 27 1 -0.3633 0.0025 1.0276 28 1 -0.3634 0.8887 -0.5160 29 1 -0.3633 -0.8913 -0.5116 30 1 2.0220 2.1138 0.0006 31 1 5.0862 1.6649 -1.0418 32 1 4.5815 2.3955 0.5008 33 1 5.6049 0.9392 0.4986 34 1 3.8250 -3.2870 -0.0019 35 1 3.1288 -5.2627 2.0303 36 1 1.4256 -4.7673 1.8820 37 1 1.9121 -6.4238 1.4477 38 1 3.3176 -6.8342 -0.5240 39 1 4.5178 -5.5983 -0.0764 40 1 4.7674 -7.2491 -2.5748 41 1 5.0679 -5.9151 -3.7145 42 1 5.8498 -5.9127 -2.1157 43 1 1.9568 -6.4679 -2.4842 44 1 -0.0247 -5.0658 -6.2884 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134334763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:41 Heat of formation + Delta-G solvation = 19.749526 kcal Electronic energy + Delta-G solvation = -24415.217424 eV Core-core repulsion = 20982.473229 eV Total energy + Delta-G solvation = -3432.744195 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.60430 -40.62576 -38.40711 -36.15373 -34.81361 -34.12959 -33.10438 -31.90407 -30.95742 -29.00934 -27.67487 -27.45850 -25.36618 -24.06531 -22.27557 -21.67126 -21.26761 -21.10301 -19.71949 -18.59614 -17.43275 -17.27355 -17.05254 -16.60939 -16.01750 -15.69263 -15.33317 -15.12612 -14.62271 -14.50199 -14.34566 -14.20249 -14.09049 -14.00643 -13.45691 -13.32177 -13.30838 -13.18140 -13.06069 -12.97479 -12.83883 -12.65442 -12.30006 -12.01412 -11.90712 -11.81224 -11.68769 -11.45514 -11.02690 -10.95688 -10.25319 -9.97392 -9.65343 -9.27539 -8.01455 -5.31829 0.57291 1.16934 1.32936 1.40571 1.44229 1.64589 2.27093 2.45758 2.48563 3.31521 3.38789 3.64313 3.79786 3.90283 4.04214 4.13429 4.33610 4.36439 4.43197 4.48704 4.51356 4.60271 4.65532 4.71133 4.75484 4.82224 4.86712 4.88576 4.98314 5.04126 5.06066 5.18341 5.20780 5.31605 5.36694 5.52154 5.58363 5.61921 5.78691 5.94016 6.23262 6.53116 6.93875 7.10880 7.29058 7.88816 8.06164 9.21065 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.004907 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.965699 B = 5704.436300 C = 6130.216964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.180 4.180 3 C -0.005 4.005 4 N -0.278 5.278 5 C 0.076 3.924 6 N -0.273 5.273 7 C -0.050 4.050 8 C 0.594 3.406 9 O -0.571 6.571 10 N -0.696 5.696 11 C 0.140 3.860 12 H 0.052 0.948 13 C -0.151 4.151 14 C -0.120 4.120 15 C 0.167 3.833 16 H 0.034 0.966 17 C -0.155 4.155 18 N -0.747 5.747 19 C -0.215 4.215 20 H 0.048 0.952 21 C -0.067 4.067 22 N -0.988 5.988 23 Si 0.950 3.050 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.244 1.244 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.227 0.773 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.410 0.590 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.024 0.976 42 H 0.077 0.923 43 H 0.363 0.637 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.542 11.313 19.310 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.190 4.190 3 C -0.148 4.148 4 N -0.067 5.067 5 C -0.062 4.062 6 N -0.111 5.111 7 C -0.208 4.208 8 C 0.380 3.620 9 O -0.449 6.449 10 N -0.347 5.347 11 C 0.036 3.964 12 H 0.071 0.929 13 C -0.209 4.209 14 C -0.158 4.158 15 C 0.059 3.941 16 H 0.053 0.947 17 C -0.215 4.215 18 N -0.391 5.391 19 C -0.347 4.347 20 H 0.066 0.934 21 C -0.258 4.258 22 N -0.640 5.640 23 Si 0.777 3.223 24 H -0.217 1.217 25 H -0.221 1.221 26 H -0.169 1.169 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.244 0.756 31 H 0.113 0.887 32 H 0.151 0.849 33 H 0.121 0.879 34 H 0.246 0.754 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.096 0.904 43 H 0.196 0.804 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.009 10.951 19.155 24.658 hybrid contribution -1.483 -0.304 -0.597 1.627 sum 9.526 10.647 18.558 23.420 Atomic orbital electron populations 1.20093 0.88210 1.02485 1.02331 1.20722 0.98148 0.91262 1.08876 1.23171 0.82903 1.01503 1.07264 1.45815 1.08726 1.03163 1.48970 1.22644 0.83243 0.94368 1.05913 1.73386 1.22325 0.95553 1.19849 1.21849 0.90872 0.94779 1.13327 1.17251 0.85303 0.83843 0.75599 1.90730 1.18577 1.83427 1.52135 1.45756 1.09643 1.05751 1.73511 1.21017 0.98564 0.79625 0.97227 0.92929 1.22094 1.02217 1.01840 0.94745 1.22139 0.99143 1.00299 0.94236 1.20481 0.85917 0.96888 0.90802 0.94739 1.22264 0.98561 1.00648 1.00022 1.42783 1.26433 1.43693 1.26199 1.18934 1.04650 1.12652 0.98419 0.93356 1.25435 1.00200 1.02580 0.97590 1.69881 1.28158 1.46860 1.19052 0.85479 0.79324 0.80164 0.77290 1.21722 1.22102 1.16865 0.90910 0.89510 0.93768 0.75617 0.88660 0.84944 0.87888 0.75386 0.90248 0.94284 0.90133 0.88957 0.87440 0.92662 0.95626 0.90433 0.80397 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.09 9.92 71.24 0.71 -1.39 16 2 C -0.18 -5.35 6.25 -19.72 -0.12 -5.47 16 3 C -0.01 -0.11 11.40 83.54 0.95 0.85 16 4 N -0.28 -5.73 3.70 -369.44 -1.37 -7.10 16 5 C 0.08 0.64 11.31 127.77 1.44 2.08 16 6 N -0.27 -7.90 11.67 -48.18 -0.56 -8.46 16 7 C -0.05 -1.74 7.13 42.45 0.30 -1.44 16 8 C 0.59 23.58 7.79 86.75 0.68 24.25 16 9 O -0.57 -26.73 14.78 -3.95 -0.06 -26.79 16 10 N -0.70 -23.29 4.44 -445.53 -1.98 -25.27 16 11 C 0.14 4.55 2.52 44.99 0.11 4.67 16 12 H 0.05 2.24 7.05 -2.39 -0.02 2.22 16 13 C -0.15 -3.89 9.48 71.98 0.68 -3.21 16 14 C -0.12 -3.33 4.29 30.59 0.13 -3.20 16 15 C 0.17 6.27 2.84 44.99 0.13 6.40 16 16 H 0.03 1.44 7.56 -2.39 -0.02 1.42 16 17 C -0.16 -5.15 9.49 71.98 0.68 -4.47 16 18 N -0.75 -36.20 4.30 -322.93 -1.39 -37.59 16 19 C -0.22 -12.99 10.41 84.04 0.87 -12.11 16 20 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 21 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 22 N -0.99 -67.18 13.97 21.65 0.30 -66.88 16 23 Si 0.95 49.08 27.74 68.60 1.90 50.99 16 24 H -0.29 -15.29 7.11 99.48 0.71 -14.59 16 25 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 26 H -0.24 -11.15 6.51 99.48 0.65 -10.50 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.62 6.72 -2.39 -0.02 1.61 16 30 H 0.23 2.16 8.06 -2.91 -0.02 2.13 16 31 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.13 0.12 8.13 -2.39 -0.02 0.10 16 33 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.41 11.81 8.33 -92.71 -0.77 11.04 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 43 H 0.36 17.04 5.66 -92.71 -0.52 16.51 16 44 H 0.25 16.56 8.31 -92.71 -0.77 15.78 16 Total: -1.00 -88.28 365.24 3.53 -84.74 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: -0.36 Total: 33.16 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 7.04 Total: 3.20 kcal Atomic # 7 Polarization: -140.30 SS G_CDS: -4.99 Total: -145.29 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.06 Total: -26.79 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.90 Total: 50.99 kcal Total: -88.28 3.53 -84.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134334763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.491 kcal (2) G-P(sol) polarization free energy of solvation -88.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds