Wall clock time and date at job start Tue Mar 31 2020 03:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47292 * 2 1 4 4 C 1.52996 * 109.47237 * 239.99556 * 2 1 3 5 5 C 1.53001 * 109.47118 * 173.89372 * 4 2 1 6 6 H 1.09004 * 109.47168 * 305.80708 * 5 4 2 7 7 C 1.52999 * 109.47084 * 185.80636 * 5 4 2 8 8 N 1.46501 * 109.47129 * 65.80825 * 5 4 2 9 9 C 1.34778 * 119.99845 * 207.70207 * 8 5 4 10 10 O 1.21280 * 120.00113 * 2.79462 * 9 8 5 11 11 C 1.50696 * 119.99533 * 182.79670 * 9 8 5 12 12 C 1.50708 * 109.47142 * 185.20240 * 11 9 8 13 13 C 1.39865 * 125.90031 * 124.70757 * 12 11 9 14 14 C 1.35315 * 107.92174 * 179.86465 * 13 12 11 15 15 N 1.34952 * 107.74540 * 0.40370 * 14 13 12 16 16 C 1.46499 * 126.04207 * 179.75027 * 15 14 13 17 17 N 1.30834 * 125.89539 * 305.02782 * 12 11 9 18 18 N 1.46499 * 109.46993 * 119.99865 * 2 1 3 19 19 C 1.36933 * 120.00462 * 277.56351 * 18 2 1 20 20 H 1.08008 * 119.99868 * 348.39208 * 19 18 2 21 21 C 1.38808 * 120.00687 * 168.38926 * 19 18 2 22 22 N 1.31617 * 120.00334 * 182.24339 * 21 19 18 23 23 Si 1.86808 * 119.99698 * 2.24480 * 21 19 18 24 24 H 1.48500 * 109.46833 * 87.71609 * 23 21 19 25 25 H 1.48495 * 109.46917 * 207.71758 * 23 21 19 26 26 H 1.48500 * 109.46864 * 327.72038 * 23 21 19 27 27 H 1.09002 * 109.47292 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47221 * 300.00549 * 1 2 3 29 29 H 1.09000 * 109.46787 * 59.99740 * 1 2 3 30 30 H 1.08996 * 109.47816 * 293.89800 * 4 2 1 31 31 H 1.09006 * 109.46777 * 53.90235 * 4 2 1 32 32 H 1.09007 * 109.47387 * 179.97438 * 7 5 4 33 33 H 1.08995 * 109.47153 * 300.00332 * 7 5 4 34 34 H 1.09006 * 109.47160 * 60.00494 * 7 5 4 35 35 H 0.96993 * 119.99834 * 27.69750 * 8 5 4 36 36 H 1.09003 * 109.47228 * 305.19589 * 11 9 8 37 37 H 1.08994 * 109.47761 * 65.20323 * 11 9 8 38 38 H 1.08005 * 126.04102 * 359.97438 * 13 12 11 39 39 H 1.07994 * 126.13143 * 180.14714 * 14 13 12 40 40 H 1.08995 * 109.46653 * 269.97326 * 16 15 14 41 41 H 1.08998 * 109.46571 * 29.97077 * 16 15 14 42 42 H 1.08995 * 109.47385 * 149.96785 * 16 15 14 43 43 H 0.97006 * 119.99911 * 97.84140 * 18 2 1 44 44 H 0.97007 * 119.99954 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5623 -0.5898 -1.3282 6 1 3.8392 0.4633 -1.2773 7 6 4.0577 -1.1841 -2.6481 8 7 4.1735 -1.3101 -0.2085 9 6 5.3696 -0.9175 0.2729 10 8 5.9164 0.0625 -0.1871 11 6 6.0276 -1.6962 1.3826 12 6 7.2809 -0.9837 1.8217 13 6 7.5794 -0.5781 3.1265 14 6 8.7925 0.0211 3.1091 15 7 9.2417 0.0036 1.8366 16 6 10.5152 0.5526 1.3644 17 7 8.2751 -0.6326 1.0470 18 7 2.0183 -0.6906 1.1962 19 6 2.0994 -0.0214 2.3881 20 1 1.9859 1.0525 2.4133 21 6 2.3273 -0.7228 3.5640 22 7 2.3612 -0.0851 4.7148 23 14 2.5859 -2.5722 3.5131 24 1 4.0253 -2.8649 3.2945 25 1 2.1494 -3.1687 4.8010 26 1 1.7886 -3.1531 2.4030 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.7687 -1.7756 -1.1962 31 1 1.5902 -0.2744 -2.1358 32 1 5.1422 -1.0900 -2.7047 33 1 3.7808 -2.2371 -2.6991 34 1 3.6030 -0.6481 -3.4813 35 1 3.7173 -2.0695 0.1865 36 1 5.3416 -1.7774 2.2258 37 1 6.2831 -2.6935 1.0247 38 1 6.9531 -0.7198 3.9950 39 1 9.3071 0.4421 3.9601 40 1 10.3764 1.5939 1.0740 41 1 11.2546 0.4936 2.1631 42 1 10.8619 -0.0212 0.5051 43 1 2.2880 -1.6209 1.1430 44 1 2.5209 -0.5753 5.5365 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134338276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:49 Heat of formation + Delta-G solvation = 56.887188 kcal Electronic energy + Delta-G solvation = -24745.361684 eV Core-core repulsion = 21314.227898 eV Total energy + Delta-G solvation = -3431.133785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89782 -39.25420 -36.87984 -34.30300 -33.54567 -32.24511 -31.11914 -30.01320 -29.32151 -28.78854 -26.37022 -25.54855 -23.31040 -21.65620 -20.86966 -20.42765 -19.88167 -19.07149 -17.52407 -16.76210 -16.53710 -15.86117 -15.18818 -14.83493 -14.70606 -14.30434 -13.87111 -13.57484 -13.45794 -13.25527 -12.87282 -12.82790 -12.54649 -12.45706 -12.37088 -12.17354 -11.99036 -11.87169 -11.72092 -11.61851 -11.01311 -10.81096 -10.72321 -10.41725 -10.34761 -10.25424 -9.96359 -9.57802 -9.26952 -8.90364 -8.86235 -8.44689 -8.24507 -7.19081 -5.74208 -3.09535 2.17194 2.74586 3.03784 3.24053 3.32142 3.33154 3.42151 3.79953 4.56437 4.61973 4.98641 5.02915 5.07391 5.16349 5.24416 5.36263 5.38027 5.47024 5.53836 5.61255 5.64191 5.73650 5.80432 5.90155 5.94541 6.08156 6.09588 6.16725 6.21151 6.31131 6.34738 6.40417 6.46695 6.53746 6.86065 6.94277 7.04076 7.09684 7.26754 8.02878 8.05331 8.08112 8.44772 8.85149 9.23062 9.94343 10.16127 11.44531 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013205 B = 0.006083 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.906199 B = 4601.895275 C = 6036.423298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.053 0.947 4 C -0.135 4.135 5 C 0.149 3.851 6 H 0.088 0.912 7 C -0.161 4.161 8 N -0.709 5.709 9 C 0.531 3.469 10 O -0.534 6.534 11 C -0.069 4.069 12 C 0.093 3.907 13 C -0.255 4.255 14 C 0.043 3.957 15 N -0.384 5.384 16 C 0.107 3.893 17 N -0.266 5.266 18 N -0.739 5.739 19 C -0.233 4.233 20 H 0.087 0.913 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.866 3.134 24 H -0.276 1.276 25 H -0.292 1.292 26 H -0.277 1.277 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.393 0.607 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.150 0.850 39 H 0.171 0.829 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.352 0.648 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.857 -3.912 -9.023 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.067 3.933 3 H 0.071 0.929 4 C -0.174 4.174 5 C 0.044 3.956 6 H 0.106 0.894 7 C -0.220 4.220 8 N -0.362 5.362 9 C 0.316 3.684 10 O -0.410 6.410 11 C -0.111 4.111 12 C -0.075 4.075 13 C -0.284 4.284 14 C -0.102 4.102 15 N -0.167 5.167 16 C -0.035 4.035 17 N -0.088 5.088 18 N -0.384 5.384 19 C -0.363 4.363 20 H 0.105 0.895 21 C -0.189 4.189 22 N -0.580 5.580 23 Si 0.696 3.304 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.203 1.203 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.229 0.771 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.167 0.833 39 H 0.188 0.812 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.186 0.814 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.850 -2.948 -10.406 15.320 hybrid contribution -0.409 -1.604 1.381 2.156 sum 10.442 -4.551 -9.025 14.532 Atomic orbital electron populations 1.22384 0.98886 1.00681 1.00407 1.20244 0.91731 0.95883 0.85444 0.92888 1.22231 0.94137 1.01463 0.99555 1.20831 0.92119 0.97734 0.84876 0.89395 1.22205 1.01759 1.00793 0.97243 1.45906 1.20404 1.34494 1.35366 1.20054 0.80977 0.84773 0.82582 1.90675 1.63921 1.26369 1.60019 1.20198 0.92858 0.98376 0.99659 1.21502 0.94733 0.99187 0.92047 1.21475 0.98440 1.10132 0.98371 1.22413 0.96887 1.02378 0.88529 1.48480 1.16299 1.46315 1.05638 1.21734 0.81113 0.99277 1.01380 1.77375 0.99178 1.15029 1.17239 1.42739 1.78317 1.10806 1.06503 1.19028 1.41251 0.93095 0.82958 0.89547 1.24683 1.02485 0.96604 0.95118 1.69694 1.56472 1.34606 0.97200 0.86899 0.78110 0.88046 0.77312 1.20290 1.21818 1.20250 0.93783 0.92324 0.94383 0.91868 0.90468 0.92448 0.92872 0.92060 0.77146 0.86309 0.88048 0.83268 0.81212 0.91090 0.89905 0.89689 0.81447 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.46 37.16 0.35 -2.46 16 2 C 0.18 3.24 2.88 -67.93 -0.20 3.04 16 3 H 0.05 1.07 8.10 -51.93 -0.42 0.65 16 4 C -0.14 -1.95 4.41 -26.73 -0.12 -2.07 16 5 C 0.15 2.32 2.63 -67.93 -0.18 2.14 16 6 H 0.09 1.60 7.45 -51.93 -0.39 1.21 16 7 C -0.16 -2.09 9.51 37.16 0.35 -1.74 16 8 N -0.71 -12.07 3.74 -53.80 -0.20 -12.27 16 9 C 0.53 10.34 7.80 -10.99 -0.09 10.25 16 10 O -0.53 -12.15 15.09 5.56 0.08 -12.07 16 11 C -0.07 -1.24 6.28 -29.03 -0.18 -1.42 16 12 C 0.09 1.76 6.07 -82.41 -0.50 1.26 16 13 C -0.25 -4.46 10.72 -40.01 -0.43 -4.89 16 14 C 0.04 0.62 11.49 -17.22 -0.20 0.43 16 15 N -0.38 -5.89 4.01 -68.17 -0.27 -6.16 16 16 C 0.11 1.05 11.47 59.85 0.69 1.74 16 17 N -0.27 -5.05 11.82 33.67 0.40 -4.65 16 18 N -0.74 -16.17 3.74 -53.43 -0.20 -16.37 16 19 C -0.23 -6.28 10.39 -15.06 -0.16 -6.44 16 20 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 21 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 22 N -0.93 -28.38 13.97 55.49 0.78 -27.61 16 23 Si 0.87 20.21 27.34 -169.99 -4.65 15.57 16 24 H -0.28 -5.89 5.77 56.52 0.33 -5.57 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.09 6.72 56.52 0.38 -5.71 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.39 6.30 6.73 -40.82 -0.27 6.03 16 36 H 0.12 2.24 6.45 -51.93 -0.33 1.91 16 37 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.15 2.53 8.06 -52.48 -0.42 2.11 16 39 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.35 7.33 3.78 -40.82 -0.15 7.17 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -35.21 360.60 -6.52 -41.74 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -7.15 Total: 16.46 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.75 Total: -0.06 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: 0.50 Total: -67.07 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.65 Total: 15.57 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.21 -6.52 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134338276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.625 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds