Wall clock time and date at job start Tue Mar 31 2020 03:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47292 * 2 1 4 4 C 1.52996 * 109.47237 * 239.99556 * 2 1 3 5 5 C 1.53001 * 109.47118 * 173.89372 * 4 2 1 6 6 H 1.09004 * 109.47168 * 305.80708 * 5 4 2 7 7 C 1.52999 * 109.47084 * 185.80636 * 5 4 2 8 8 N 1.46501 * 109.47129 * 65.80825 * 5 4 2 9 9 C 1.34778 * 119.99845 * 207.70207 * 8 5 4 10 10 O 1.21280 * 120.00113 * 2.79462 * 9 8 5 11 11 C 1.50696 * 119.99533 * 182.79670 * 9 8 5 12 12 C 1.50708 * 109.47142 * 185.20240 * 11 9 8 13 13 C 1.39865 * 125.90031 * 124.70757 * 12 11 9 14 14 C 1.35315 * 107.92174 * 179.86465 * 13 12 11 15 15 N 1.34952 * 107.74540 * 0.40370 * 14 13 12 16 16 C 1.46499 * 126.04207 * 179.75027 * 15 14 13 17 17 N 1.30834 * 125.89539 * 305.02782 * 12 11 9 18 18 N 1.46499 * 109.46993 * 119.99865 * 2 1 3 19 19 C 1.36933 * 120.00462 * 277.56351 * 18 2 1 20 20 H 1.08008 * 119.99868 * 348.39208 * 19 18 2 21 21 C 1.38808 * 120.00687 * 168.38926 * 19 18 2 22 22 N 1.31617 * 120.00334 * 182.24339 * 21 19 18 23 23 Si 1.86808 * 119.99698 * 2.24480 * 21 19 18 24 24 H 1.48500 * 109.46833 * 87.71609 * 23 21 19 25 25 H 1.48495 * 109.46917 * 207.71758 * 23 21 19 26 26 H 1.48500 * 109.46864 * 327.72038 * 23 21 19 27 27 H 1.09002 * 109.47292 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47221 * 300.00549 * 1 2 3 29 29 H 1.09000 * 109.46787 * 59.99740 * 1 2 3 30 30 H 1.08996 * 109.47816 * 293.89800 * 4 2 1 31 31 H 1.09006 * 109.46777 * 53.90235 * 4 2 1 32 32 H 1.09007 * 109.47387 * 179.97438 * 7 5 4 33 33 H 1.08995 * 109.47153 * 300.00332 * 7 5 4 34 34 H 1.09006 * 109.47160 * 60.00494 * 7 5 4 35 35 H 0.96993 * 119.99834 * 27.69750 * 8 5 4 36 36 H 1.09003 * 109.47228 * 305.19589 * 11 9 8 37 37 H 1.08994 * 109.47761 * 65.20323 * 11 9 8 38 38 H 1.08005 * 126.04102 * 359.97438 * 13 12 11 39 39 H 1.07994 * 126.13143 * 180.14714 * 14 13 12 40 40 H 1.08995 * 109.46653 * 269.97326 * 16 15 14 41 41 H 1.08998 * 109.46571 * 29.97077 * 16 15 14 42 42 H 1.08995 * 109.47385 * 149.96785 * 16 15 14 43 43 H 0.97006 * 119.99911 * 97.84140 * 18 2 1 44 44 H 0.97007 * 119.99954 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5623 -0.5898 -1.3282 6 1 3.8392 0.4633 -1.2773 7 6 4.0577 -1.1841 -2.6481 8 7 4.1735 -1.3101 -0.2085 9 6 5.3696 -0.9175 0.2729 10 8 5.9164 0.0625 -0.1871 11 6 6.0276 -1.6962 1.3826 12 6 7.2809 -0.9837 1.8217 13 6 7.5794 -0.5781 3.1265 14 6 8.7925 0.0211 3.1091 15 7 9.2417 0.0036 1.8366 16 6 10.5152 0.5526 1.3644 17 7 8.2751 -0.6326 1.0470 18 7 2.0183 -0.6906 1.1962 19 6 2.0994 -0.0214 2.3881 20 1 1.9859 1.0525 2.4133 21 6 2.3273 -0.7228 3.5640 22 7 2.3612 -0.0851 4.7148 23 14 2.5859 -2.5722 3.5131 24 1 4.0253 -2.8649 3.2945 25 1 2.1494 -3.1687 4.8010 26 1 1.7886 -3.1531 2.4030 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.7687 -1.7756 -1.1962 31 1 1.5902 -0.2744 -2.1358 32 1 5.1422 -1.0900 -2.7047 33 1 3.7808 -2.2371 -2.6991 34 1 3.6030 -0.6481 -3.4813 35 1 3.7173 -2.0695 0.1865 36 1 5.3416 -1.7774 2.2258 37 1 6.2831 -2.6935 1.0247 38 1 6.9531 -0.7198 3.9950 39 1 9.3071 0.4421 3.9601 40 1 10.3764 1.5939 1.0740 41 1 11.2546 0.4936 2.1631 42 1 10.8619 -0.0212 0.5051 43 1 2.2880 -1.6209 1.1430 44 1 2.5209 -0.5753 5.5365 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134338276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:48 Heat of formation + Delta-G solvation = 31.753967 kcal Electronic energy + Delta-G solvation = -24746.451542 eV Core-core repulsion = 21314.227898 eV Total energy + Delta-G solvation = -3432.223644 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.13686 -40.69646 -38.40820 -35.89871 -34.77044 -34.07304 -32.63042 -31.31727 -30.85265 -30.13398 -27.60696 -26.63573 -25.27706 -22.99124 -22.05025 -21.90742 -21.34182 -20.43888 -19.53104 -18.00231 -17.89574 -17.21719 -16.52990 -16.38034 -16.14430 -15.97348 -15.16463 -14.88665 -14.84589 -14.60656 -14.36967 -14.26373 -14.09160 -13.86926 -13.45900 -13.39489 -13.28996 -13.10113 -12.97647 -12.85090 -12.54767 -12.46517 -12.28870 -12.05467 -11.82838 -11.60663 -11.55999 -11.43690 -10.86002 -10.75326 -10.16445 -9.90375 -9.47691 -9.13511 -7.91625 -5.25251 0.96256 1.38470 1.46993 1.53668 1.67619 1.73193 1.85722 2.46070 2.56697 3.38858 3.50477 3.66354 3.83005 3.90102 4.03480 4.13482 4.19617 4.34789 4.38479 4.43531 4.44571 4.56660 4.66449 4.66626 4.79991 4.81745 4.86425 4.91313 4.92070 5.05911 5.08365 5.09431 5.16517 5.36818 5.40120 5.60876 5.64637 5.74137 5.90748 6.20797 6.30722 6.64965 6.77553 7.19377 7.40401 7.92914 8.15573 9.30653 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013205 B = 0.006083 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.906199 B = 4601.895275 C = 6036.423298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 H 0.023 0.977 4 C -0.120 4.120 5 C 0.145 3.855 6 H 0.053 0.947 7 C -0.150 4.150 8 N -0.702 5.702 9 C 0.525 3.475 10 O -0.575 6.575 11 C -0.068 4.068 12 C 0.068 3.932 13 C -0.296 4.296 14 C 0.063 3.937 15 N -0.383 5.383 16 C 0.095 3.905 17 N -0.303 5.303 18 N -0.736 5.736 19 C -0.221 4.221 20 H 0.036 0.964 21 C -0.060 4.060 22 N -0.987 5.987 23 Si 0.933 3.067 24 H -0.245 1.245 25 H -0.307 1.307 26 H -0.246 1.246 27 H 0.056 0.944 28 H 0.023 0.977 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.401 0.599 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.217 0.783 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.089 0.911 43 H 0.362 0.638 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.492 -6.134 -10.983 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.158 4.158 5 C 0.040 3.960 6 H 0.072 0.928 7 C -0.208 4.208 8 N -0.354 5.354 9 C 0.311 3.689 10 O -0.454 6.454 11 C -0.109 4.109 12 C -0.098 4.098 13 C -0.326 4.326 14 C -0.084 4.084 15 N -0.166 5.166 16 C -0.044 4.044 17 N -0.127 5.127 18 N -0.382 5.382 19 C -0.352 4.352 20 H 0.054 0.946 21 C -0.251 4.251 22 N -0.637 5.637 23 Si 0.759 3.241 24 H -0.170 1.170 25 H -0.235 1.235 26 H -0.170 1.170 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.237 0.763 36 H 0.125 0.875 37 H 0.150 0.850 38 H 0.161 0.839 39 H 0.234 0.766 40 H 0.095 0.905 41 H 0.142 0.858 42 H 0.107 0.893 43 H 0.197 0.803 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.466 -5.188 -12.456 17.706 hybrid contribution -0.572 -0.714 1.972 2.174 sum 10.894 -5.901 -10.483 16.230 Atomic orbital electron populations 1.22249 0.97322 1.01436 1.00435 1.20461 0.92810 0.94807 0.86020 0.95847 1.22155 0.92857 1.02476 0.98334 1.20956 0.93072 0.96069 0.85873 0.92845 1.22089 1.00458 1.02235 0.95997 1.45937 1.19626 1.34393 1.35455 1.20395 0.81462 0.84373 0.82704 1.90644 1.65125 1.28147 1.61520 1.20219 0.92442 0.99736 0.98515 1.21749 0.95239 0.99994 0.92785 1.21668 1.00318 1.12629 0.97968 1.23042 0.95834 1.00043 0.89436 1.48926 1.16912 1.45114 1.05678 1.22177 0.79704 0.99301 1.03237 1.77263 1.00219 1.16582 1.18621 1.42630 1.78629 1.11046 1.05868 1.18813 1.39992 0.91182 0.85216 0.94610 1.25516 1.02773 1.02509 0.94306 1.69921 1.58636 1.37042 0.98124 0.85818 0.80158 0.80743 0.77423 1.17037 1.23479 1.17001 0.92540 0.95760 0.90962 0.89518 0.86977 0.94507 0.90655 0.89735 0.76299 0.87547 0.85003 0.83889 0.76645 0.90475 0.85785 0.89271 0.80342 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 9.46 71.98 0.68 -4.36 16 2 C 0.17 5.99 2.88 44.99 0.13 6.12 16 3 H 0.02 0.98 8.10 -2.39 -0.02 0.96 16 4 C -0.12 -3.06 4.41 30.59 0.13 -2.93 16 5 C 0.14 4.28 2.63 44.99 0.12 4.40 16 6 H 0.05 1.97 7.45 -2.38 -0.02 1.95 16 7 C -0.15 -3.45 9.51 71.98 0.68 -2.76 16 8 N -0.70 -23.13 3.74 -442.53 -1.65 -24.79 16 9 C 0.52 20.62 7.80 87.66 0.68 21.31 16 10 O -0.57 -27.05 15.09 -3.03 -0.05 -27.10 16 11 C -0.07 -2.42 6.28 29.10 0.18 -2.24 16 12 C 0.07 2.64 6.07 43.10 0.26 2.90 16 13 C -0.30 -10.49 10.72 21.99 0.24 -10.25 16 14 C 0.06 1.74 11.49 83.54 0.96 2.70 16 15 N -0.38 -11.29 4.01 -369.58 -1.48 -12.77 16 16 C 0.10 1.67 11.47 127.77 1.47 3.13 16 17 N -0.30 -11.58 11.82 -47.38 -0.56 -12.14 16 18 N -0.74 -31.96 3.74 -322.95 -1.21 -33.16 16 19 C -0.22 -12.36 10.39 84.03 0.87 -11.49 16 20 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 21 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 22 N -0.99 -62.84 13.97 21.65 0.30 -62.54 16 23 Si 0.93 41.52 27.34 68.60 1.88 43.40 16 24 H -0.25 -9.68 5.77 99.48 0.57 -9.10 16 25 H -0.31 -14.52 7.11 99.48 0.71 -13.82 16 26 H -0.25 -9.64 6.72 99.48 0.67 -8.97 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.40 11.86 6.73 -92.71 -0.62 11.24 16 36 H 0.11 4.01 6.45 -2.39 -0.02 3.99 16 37 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 38 H 0.14 5.04 8.06 -2.91 -0.02 5.02 16 39 H 0.22 3.70 8.06 -2.91 -0.02 3.68 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.36 14.28 3.78 -92.70 -0.35 13.93 16 44 H 0.25 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -83.63 360.60 3.95 -79.67 By element: Atomic # 1 Polarization: 46.02 SS G_CDS: -0.15 Total: 45.87 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.88 Total: 3.56 kcal Atomic # 7 Polarization: -140.80 SS G_CDS: -4.60 Total: -145.40 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.05 Total: -27.10 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.88 Total: 43.40 kcal Total: -83.63 3.95 -79.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134338276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.429 kcal (2) G-P(sol) polarization free energy of solvation -83.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds