Wall clock time and date at job start Tue Mar 31 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47038 * 2 1 4 4 C 1.53001 * 109.46947 * 240.00138 * 2 1 3 5 5 C 1.52997 * 109.47049 * 175.00112 * 4 2 1 6 6 H 1.09001 * 109.47289 * 305.00191 * 5 4 2 7 7 C 1.53006 * 109.47127 * 185.00237 * 5 4 2 8 8 N 1.46500 * 109.47473 * 64.99864 * 5 4 2 9 9 C 1.34770 * 120.00256 * 205.00145 * 8 5 4 10 10 O 1.21283 * 120.00026 * 359.97438 * 9 8 5 11 11 C 1.50701 * 119.99922 * 180.02562 * 9 8 5 12 12 C 1.53002 * 109.47061 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47382 * 179.97438 * 12 11 9 14 14 C 1.34669 * 126.59055 * 274.69463 * 13 12 11 15 15 N 1.34127 * 108.02292 * 179.87239 * 14 13 12 16 16 C 1.30500 * 109.25407 * 0.39273 * 15 14 13 17 17 N 1.35040 * 108.70062 * 359.75947 * 16 15 14 18 18 H 0.97000 * 126.39999 * 180.02562 * 17 16 15 19 19 N 1.46503 * 109.47413 * 120.00380 * 2 1 3 20 20 C 1.36937 * 119.99616 * 275.00383 * 19 2 1 21 21 H 1.08001 * 120.00266 * 359.97438 * 20 19 2 22 22 C 1.38819 * 119.99577 * 180.02562 * 20 19 2 23 23 N 1.31614 * 120.00083 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99795 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47135 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47401 * 119.99587 * 24 22 20 27 27 H 1.48496 * 109.47180 * 240.00068 * 24 22 20 28 28 H 1.09000 * 109.47226 * 299.99876 * 1 2 3 29 29 H 1.09000 * 109.47551 * 60.00098 * 1 2 3 30 30 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47250 * 54.99993 * 4 2 1 32 32 H 1.08998 * 109.47252 * 294.99917 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 7 5 4 34 34 H 1.08993 * 109.46955 * 60.00011 * 7 5 4 35 35 H 1.09000 * 109.47050 * 179.97438 * 7 5 4 36 36 H 0.97005 * 119.99374 * 25.00210 * 8 5 4 37 37 H 1.08991 * 109.47241 * 299.99575 * 11 9 8 38 38 H 1.09000 * 109.47273 * 60.00364 * 11 9 8 39 39 H 1.08997 * 109.47643 * 300.00079 * 12 11 9 40 40 H 1.09005 * 109.47250 * 60.00117 * 12 11 9 41 41 H 1.08004 * 125.99245 * 0.02562 * 14 13 12 42 42 H 1.08004 * 125.65110 * 179.73372 * 16 15 14 43 43 H 0.97002 * 120.00011 * 94.99370 * 19 2 1 44 44 H 0.97000 * 119.99717 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6242 8 7 4.1536 -1.3342 -0.1825 9 6 5.3747 -0.9911 0.2732 10 8 5.9862 -0.0858 -0.2535 11 6 5.9807 -1.7331 1.4365 12 6 7.3602 -1.1506 1.7501 13 6 7.9660 -1.8921 2.9138 14 6 7.7653 -1.6365 4.2207 15 7 8.4809 -2.5209 4.9312 16 6 9.1240 -3.3095 4.1142 17 7 8.8306 -2.9511 2.8457 18 1 9.1688 -3.3668 2.0372 19 7 2.0184 -0.6907 1.1961 20 6 2.1491 -0.0076 2.3757 21 1 1.8925 1.0404 2.4242 22 6 2.6124 -0.6619 3.5090 23 7 2.9255 -1.9389 3.4498 24 14 2.7914 0.2700 5.1179 25 1 2.3773 1.6825 4.9206 26 1 1.9312 -0.3585 6.1525 27 1 4.2085 0.2273 5.5597 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6053 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2057 33 1 3.7722 -2.2741 -2.6701 34 1 3.6263 -0.6886 -3.4658 35 1 5.1507 -1.1477 -2.6703 36 1 3.6646 -2.0585 0.2385 37 1 5.3356 -1.6301 2.3090 38 1 6.0816 -2.7881 1.1818 39 1 8.0053 -1.2539 0.8776 40 1 7.2598 -0.0954 2.0048 41 1 7.1362 -0.8577 4.6258 42 1 9.7823 -4.1150 4.4044 43 1 2.2490 -1.6319 1.1525 44 1 3.2489 -2.3962 4.2417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134544324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:12 Heat of formation + Delta-G solvation = 18.203884 kcal Electronic energy + Delta-G solvation = -24643.702959 eV Core-core repulsion = 21210.891740 eV Total energy + Delta-G solvation = -3432.811219 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.81153 -39.28757 -36.86030 -34.25261 -33.45034 -32.27707 -32.05239 -30.62044 -28.65989 -28.17059 -26.33726 -24.23823 -23.63777 -21.39287 -21.04732 -20.40339 -20.21716 -19.37658 -17.70283 -17.16058 -16.31096 -15.79763 -15.07171 -14.84747 -14.67916 -14.16677 -13.82603 -13.76662 -13.53922 -13.19166 -13.07303 -12.84355 -12.50996 -12.43198 -12.11959 -11.82167 -11.75209 -11.69039 -11.57956 -11.02297 -10.82351 -10.73999 -10.67034 -10.36146 -10.20432 -9.88188 -9.81312 -9.75323 -9.66889 -9.18030 -8.94558 -8.32278 -8.11473 -6.93850 -5.79469 -3.05662 2.22869 3.26477 3.37937 3.39441 3.45353 3.52806 3.55031 3.92562 4.60613 4.83706 5.04837 5.12643 5.29386 5.40793 5.47803 5.49538 5.55586 5.64467 5.68393 5.77726 5.85144 5.87942 5.93074 5.99834 6.01846 6.15117 6.24241 6.25399 6.35563 6.42875 6.51127 6.55867 6.60602 6.72775 6.86125 6.98884 7.05929 7.22833 7.53209 7.71948 8.24161 8.26238 8.39828 8.95640 9.51653 10.05078 10.40934 11.42673 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.006031 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.801501 B = 4641.450582 C = 6478.065402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.082 0.918 7 C -0.161 4.161 8 N -0.697 5.697 9 C 0.530 3.470 10 O -0.570 6.570 11 C -0.139 4.139 12 C -0.024 4.024 13 C -0.011 4.011 14 C -0.019 4.019 15 N -0.494 5.494 16 C 0.170 3.830 17 N -0.569 5.569 18 H 0.416 0.584 19 N -0.716 5.716 20 C -0.228 4.228 21 H 0.067 0.933 22 C -0.009 4.009 23 N -0.932 5.932 24 Si 0.896 3.104 25 H -0.284 1.284 26 H -0.294 1.294 27 H -0.288 1.288 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.405 0.595 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.169 0.831 42 H 0.204 0.796 43 H 0.378 0.622 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 -3.751 -8.941 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.044 3.956 6 H 0.100 0.900 7 C -0.220 4.220 8 N -0.348 5.348 9 C 0.318 3.682 10 O -0.451 6.451 11 C -0.179 4.179 12 C -0.063 4.063 13 C -0.126 4.126 14 C -0.166 4.166 15 N -0.213 5.213 16 C -0.113 4.113 17 N -0.173 5.173 18 H 0.253 0.747 19 N -0.359 5.359 20 C -0.360 4.360 21 H 0.085 0.915 22 C -0.204 4.204 23 N -0.581 5.581 24 Si 0.728 3.272 25 H -0.209 1.209 26 H -0.222 1.222 27 H -0.215 1.215 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.243 0.757 37 H 0.145 0.855 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.186 0.814 42 H 0.220 0.780 43 H 0.213 0.787 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.127 -2.998 -8.264 11.317 hybrid contribution -0.119 -0.475 0.037 0.491 sum 7.008 -3.473 -8.227 11.352 Atomic orbital electron populations 1.22426 0.99392 1.00681 0.99893 1.20272 0.91621 0.95712 0.86421 0.93470 1.22201 0.94094 1.01548 0.99353 1.20780 0.92477 0.97307 0.85055 0.90018 1.22201 1.01625 1.00742 0.97411 1.45972 1.17913 1.37533 1.33426 1.20372 0.81253 0.83221 0.83393 1.90605 1.62423 1.31734 1.60326 1.21685 0.97018 0.99310 0.99869 1.19744 0.94475 0.99198 0.92919 1.21380 0.99148 0.93967 0.98147 1.22162 1.03368 1.01801 0.89274 1.70255 1.10759 1.06432 1.33831 1.24862 1.04184 1.02830 0.79424 1.43257 1.37211 1.27127 1.09739 0.74723 1.42455 1.77979 1.10131 1.05372 1.19233 1.35695 0.93780 0.87244 0.91502 1.24565 1.02406 0.95933 0.97529 1.69577 1.51484 1.08288 1.28797 0.86280 0.77623 0.78808 0.84503 1.20925 1.22153 1.21527 0.92885 0.94637 0.93648 0.90968 0.91830 0.92929 0.92259 0.92542 0.75748 0.85544 0.90383 0.91253 0.88893 0.81418 0.77991 0.78743 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.49 37.16 0.35 -2.42 16 2 C 0.17 3.09 2.89 -67.93 -0.20 2.90 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 C -0.13 -1.96 4.43 -26.73 -0.12 -2.07 16 5 C 0.15 2.33 2.57 -67.93 -0.17 2.16 16 6 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 7 C -0.16 -2.11 9.48 37.16 0.35 -1.75 16 8 N -0.70 -11.99 3.80 -53.80 -0.20 -12.19 16 9 C 0.53 9.85 7.79 -10.99 -0.09 9.76 16 10 O -0.57 -11.86 15.65 5.55 0.09 -11.77 16 11 C -0.14 -2.36 5.68 -27.88 -0.16 -2.52 16 12 C -0.02 -0.37 5.06 -27.88 -0.14 -0.51 16 13 C -0.01 -0.17 6.49 -81.60 -0.53 -0.70 16 14 C -0.02 -0.33 11.79 -17.81 -0.21 -0.54 16 15 N -0.49 -8.44 11.25 -14.66 -0.16 -8.60 16 16 C 0.17 2.17 13.04 -90.38 -1.18 0.99 16 17 N -0.57 -6.77 6.15 -10.30 -0.06 -6.83 16 18 H 0.42 3.42 8.96 -40.82 -0.37 3.06 16 19 N -0.72 -15.74 3.84 -53.42 -0.21 -15.94 16 20 C -0.23 -5.82 9.93 -15.06 -0.15 -5.97 16 21 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.93 -24.68 12.78 55.49 0.71 -23.97 16 24 Si 0.90 21.76 29.55 -169.99 -5.02 16.73 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.40 7.14 6.51 -40.82 -0.27 6.87 16 37 H 0.13 2.60 7.86 -51.93 -0.41 2.19 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.09 1.55 8.10 -51.93 -0.42 1.13 16 41 H 0.17 3.03 8.06 -52.48 -0.42 2.61 16 42 H 0.20 1.65 8.06 -52.48 -0.42 1.23 16 43 H 0.38 8.49 5.70 -40.82 -0.23 8.26 16 44 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -30.50 364.93 -8.82 -39.32 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -7.12 Total: 18.77 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.33 Total: -1.01 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: 0.07 Total: -67.54 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.50 -8.82 -39.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134544324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.524 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds