Wall clock time and date at job start Tue Mar 31 2020 03:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47038 * 2 1 4 4 C 1.53001 * 109.46947 * 240.00138 * 2 1 3 5 5 C 1.52997 * 109.47049 * 175.00112 * 4 2 1 6 6 H 1.09001 * 109.47289 * 305.00191 * 5 4 2 7 7 C 1.53006 * 109.47127 * 185.00237 * 5 4 2 8 8 N 1.46500 * 109.47473 * 64.99864 * 5 4 2 9 9 C 1.34770 * 120.00256 * 205.00145 * 8 5 4 10 10 O 1.21283 * 120.00026 * 359.97438 * 9 8 5 11 11 C 1.50701 * 119.99922 * 180.02562 * 9 8 5 12 12 C 1.53002 * 109.47061 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47382 * 179.97438 * 12 11 9 14 14 C 1.34669 * 126.59055 * 274.69463 * 13 12 11 15 15 N 1.34127 * 108.02292 * 179.87239 * 14 13 12 16 16 C 1.30500 * 109.25407 * 0.39273 * 15 14 13 17 17 N 1.35040 * 108.70062 * 359.75947 * 16 15 14 18 18 H 0.97000 * 126.39999 * 180.02562 * 17 16 15 19 19 N 1.46503 * 109.47413 * 120.00380 * 2 1 3 20 20 C 1.36937 * 119.99616 * 275.00383 * 19 2 1 21 21 H 1.08001 * 120.00266 * 359.97438 * 20 19 2 22 22 C 1.38819 * 119.99577 * 180.02562 * 20 19 2 23 23 N 1.31614 * 120.00083 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99795 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47135 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47401 * 119.99587 * 24 22 20 27 27 H 1.48496 * 109.47180 * 240.00068 * 24 22 20 28 28 H 1.09000 * 109.47226 * 299.99876 * 1 2 3 29 29 H 1.09000 * 109.47551 * 60.00098 * 1 2 3 30 30 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47250 * 54.99993 * 4 2 1 32 32 H 1.08998 * 109.47252 * 294.99917 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 7 5 4 34 34 H 1.08993 * 109.46955 * 60.00011 * 7 5 4 35 35 H 1.09000 * 109.47050 * 179.97438 * 7 5 4 36 36 H 0.97005 * 119.99374 * 25.00210 * 8 5 4 37 37 H 1.08991 * 109.47241 * 299.99575 * 11 9 8 38 38 H 1.09000 * 109.47273 * 60.00364 * 11 9 8 39 39 H 1.08997 * 109.47643 * 300.00079 * 12 11 9 40 40 H 1.09005 * 109.47250 * 60.00117 * 12 11 9 41 41 H 1.08004 * 125.99245 * 0.02562 * 14 13 12 42 42 H 1.08004 * 125.65110 * 179.73372 * 16 15 14 43 43 H 0.97002 * 120.00011 * 94.99370 * 19 2 1 44 44 H 0.97000 * 119.99717 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6242 8 7 4.1536 -1.3342 -0.1825 9 6 5.3747 -0.9911 0.2732 10 8 5.9862 -0.0858 -0.2535 11 6 5.9807 -1.7331 1.4365 12 6 7.3602 -1.1506 1.7501 13 6 7.9660 -1.8921 2.9138 14 6 7.7653 -1.6365 4.2207 15 7 8.4809 -2.5209 4.9312 16 6 9.1240 -3.3095 4.1142 17 7 8.8306 -2.9511 2.8457 18 1 9.1688 -3.3668 2.0372 19 7 2.0184 -0.6907 1.1961 20 6 2.1491 -0.0076 2.3757 21 1 1.8925 1.0404 2.4242 22 6 2.6124 -0.6619 3.5090 23 7 2.9255 -1.9389 3.4498 24 14 2.7914 0.2700 5.1179 25 1 2.3773 1.6825 4.9206 26 1 1.9312 -0.3585 6.1525 27 1 4.2085 0.2273 5.5597 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6053 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2057 33 1 3.7722 -2.2741 -2.6701 34 1 3.6263 -0.6886 -3.4658 35 1 5.1507 -1.1477 -2.6703 36 1 3.6646 -2.0585 0.2385 37 1 5.3356 -1.6301 2.3090 38 1 6.0816 -2.7881 1.1818 39 1 8.0053 -1.2539 0.8776 40 1 7.2598 -0.0954 2.0048 41 1 7.1362 -0.8577 4.6258 42 1 9.7823 -4.1150 4.4044 43 1 2.2490 -1.6319 1.1525 44 1 3.2489 -2.3962 4.2417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134544324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:11 Heat of formation + Delta-G solvation = -0.434988 kcal Electronic energy + Delta-G solvation = -24644.511201 eV Core-core repulsion = 21210.891740 eV Total energy + Delta-G solvation = -3433.619461 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.95100 -40.72553 -38.33868 -35.81773 -34.79589 -33.97977 -33.24036 -32.04561 -30.29339 -29.45573 -27.57442 -25.58316 -25.47791 -22.53542 -22.31805 -21.65845 -21.60509 -20.84012 -19.08726 -18.82393 -17.68975 -17.17962 -16.60876 -16.44499 -15.88853 -15.57495 -15.42741 -15.26038 -14.95242 -14.45455 -14.37038 -14.23626 -13.87352 -13.81575 -13.46792 -13.30347 -13.13825 -12.96609 -12.87443 -12.78398 -12.54904 -12.28259 -12.10138 -12.07077 -11.68703 -11.57814 -11.37795 -10.97891 -10.93783 -10.85211 -10.66186 -9.75797 -9.32784 -8.79569 -7.84024 -5.05443 1.09134 1.45298 1.51537 1.55088 1.89095 2.18651 2.26208 2.58661 2.63186 3.50436 3.71929 3.85416 3.97262 4.02994 4.06645 4.21054 4.21394 4.38465 4.44015 4.52808 4.59670 4.61961 4.70798 4.74863 4.85729 4.89527 4.94775 4.95905 5.10783 5.15685 5.18503 5.18683 5.37163 5.40348 5.44650 5.62873 5.65667 5.73975 5.86757 6.38233 6.61975 6.80545 7.13258 7.48262 7.50557 8.20789 8.48018 9.36392 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.006031 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.801501 B = 4641.450582 C = 6478.065402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.120 4.120 5 C 0.145 3.855 6 H 0.055 0.945 7 C -0.150 4.150 8 N -0.693 5.693 9 C 0.524 3.476 10 O -0.596 6.596 11 C -0.128 4.128 12 C -0.013 4.013 13 C -0.008 4.008 14 C -0.054 4.054 15 N -0.540 5.540 16 C 0.194 3.806 17 N -0.552 5.552 18 H 0.437 0.563 19 N -0.719 5.719 20 C -0.224 4.224 21 H 0.055 0.945 22 C -0.046 4.046 23 N -0.939 5.939 24 Si 0.933 3.067 25 H -0.282 1.282 26 H -0.301 1.301 27 H -0.298 1.298 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.404 0.596 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.144 0.856 42 H 0.253 0.747 43 H 0.375 0.625 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.963 -5.230 -11.155 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.047 0.953 4 C -0.158 4.158 5 C 0.040 3.960 6 H 0.073 0.927 7 C -0.208 4.208 8 N -0.343 5.343 9 C 0.312 3.688 10 O -0.479 6.479 11 C -0.168 4.168 12 C -0.052 4.052 13 C -0.125 4.125 14 C -0.201 4.201 15 N -0.260 5.260 16 C -0.091 4.091 17 N -0.158 5.158 18 H 0.278 0.722 19 N -0.362 5.362 20 C -0.357 4.357 21 H 0.073 0.927 22 C -0.240 4.240 23 N -0.590 5.590 24 Si 0.766 3.234 25 H -0.207 1.207 26 H -0.228 1.228 27 H -0.225 1.225 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.241 0.759 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.162 0.838 42 H 0.269 0.731 43 H 0.210 0.790 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.362 -4.468 -10.534 13.607 hybrid contribution -0.213 0.006 0.690 0.722 sum 7.149 -4.462 -9.844 12.959 Atomic orbital electron populations 1.22283 0.97845 1.00956 1.00355 1.20486 0.92607 0.94914 0.86634 0.95334 1.22114 0.93129 1.01994 0.98554 1.20920 0.93244 0.95959 0.85872 0.92693 1.22089 1.00667 1.01755 0.96319 1.46039 1.17379 1.37244 1.33667 1.20626 0.81639 0.82993 0.83564 1.90585 1.63182 1.32803 1.61321 1.21553 0.96998 1.00536 0.97743 1.19579 0.94058 0.97942 0.93663 1.21116 0.99635 0.94823 0.96910 1.22033 1.04736 1.02651 0.90683 1.70196 1.12500 1.07814 1.35504 1.25781 1.02404 1.01977 0.78895 1.43151 1.36019 1.25913 1.10699 0.72222 1.42506 1.78113 1.09983 1.05581 1.19304 1.34391 0.93383 0.88576 0.92679 1.24909 1.03516 0.96585 0.99020 1.69639 1.52359 1.08579 1.28416 0.85678 0.76683 0.78216 0.82790 1.20732 1.22844 1.22529 0.95330 0.91297 0.93386 0.87554 0.90645 0.91411 0.89852 0.94048 0.75898 0.89056 0.88276 0.89349 0.91012 0.83827 0.73135 0.78991 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.49 71.98 0.68 -4.25 16 2 C 0.16 5.71 2.89 44.99 0.13 5.84 16 3 H 0.03 1.12 8.08 -2.39 -0.02 1.10 16 4 C -0.12 -3.18 4.43 30.59 0.14 -3.04 16 5 C 0.14 4.30 2.57 44.99 0.12 4.42 16 6 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 7 C -0.15 -3.50 9.48 71.98 0.68 -2.82 16 8 N -0.69 -23.48 3.80 -442.53 -1.68 -25.16 16 9 C 0.52 19.57 7.79 87.66 0.68 20.25 16 10 O -0.60 -25.03 15.65 -3.04 -0.05 -25.08 16 11 C -0.13 -4.41 5.68 29.85 0.17 -4.24 16 12 C -0.01 -0.41 5.06 29.85 0.15 -0.26 16 13 C -0.01 -0.25 6.49 40.95 0.27 0.02 16 14 C -0.05 -1.99 11.79 83.52 0.98 -1.00 16 15 N -0.54 -18.42 11.25 -200.31 -2.25 -20.67 16 16 C 0.19 4.48 13.04 180.26 2.35 6.83 16 17 N -0.55 -11.91 6.15 -186.49 -1.15 -13.06 16 18 H 0.44 5.74 8.96 -92.71 -0.83 4.91 16 19 N -0.72 -31.53 3.84 -322.93 -1.24 -32.77 16 20 C -0.22 -11.60 9.93 84.04 0.83 -10.77 16 21 H 0.06 2.95 7.83 -2.91 -0.02 2.93 16 22 C -0.05 -2.47 5.50 84.86 0.47 -2.00 16 23 N -0.94 -50.66 12.78 21.65 0.28 -50.38 16 24 Si 0.93 45.97 29.55 68.60 2.03 48.00 16 25 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 27 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.40 13.98 6.51 -92.70 -0.60 13.38 16 37 H 0.09 3.90 7.86 -2.39 -0.02 3.88 16 38 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.09 2.39 8.10 -2.39 -0.02 2.37 16 40 H 0.07 2.52 8.10 -2.38 -0.02 2.50 16 41 H 0.14 5.73 8.06 -2.91 -0.02 5.70 16 42 H 0.25 2.98 8.06 -2.91 -0.02 2.96 16 43 H 0.38 16.77 5.70 -92.71 -0.53 16.24 16 44 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -68.60 364.93 2.63 -65.96 By element: Atomic # 1 Polarization: 45.13 SS G_CDS: -0.95 Total: 44.18 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 7.65 Total: 8.98 kcal Atomic # 7 Polarization: -136.00 SS G_CDS: -6.05 Total: -142.04 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.05 Total: -25.08 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -68.60 2.63 -65.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134544324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.528 kcal (2) G-P(sol) polarization free energy of solvation -68.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds