Wall clock time and date at job start Tue Mar 31 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47063 * 2 1 4 4 N 1.30447 * 125.98617 * 270.03646 * 3 2 1 5 5 N 1.39937 * 108.89548 * 179.97438 * 4 3 2 6 6 H 0.96995 * 125.75504 * 180.02562 * 5 4 3 7 7 C 1.34264 * 108.49058 * 359.74703 * 5 4 3 8 8 C 1.38051 * 107.41658 * 0.39977 * 7 5 4 9 9 C 1.47427 * 126.41323 * 179.86626 * 8 7 5 10 10 O 1.21600 * 119.99764 * 179.68541 * 9 8 7 11 11 N 1.34779 * 119.99900 * 359.68923 * 9 8 7 12 12 C 1.46500 * 119.99793 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47092 * 34.99824 * 12 11 9 14 14 C 1.53000 * 109.47023 * 274.99565 * 12 11 9 15 15 C 1.52997 * 109.47007 * 154.99772 * 12 11 9 16 16 C 1.52994 * 109.47404 * 294.99774 * 15 12 11 17 17 H 1.09001 * 109.47698 * 305.00111 * 16 15 12 18 18 C 1.53003 * 109.47265 * 184.99783 * 16 15 12 19 19 N 1.46504 * 109.46881 * 65.00370 * 16 15 12 20 20 C 1.36937 * 119.99855 * 205.00272 * 19 16 15 21 21 H 1.08001 * 119.99967 * 359.97438 * 20 19 16 22 22 C 1.38813 * 120.00180 * 179.97438 * 20 19 16 23 23 N 1.31619 * 119.99766 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00114 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47190 * 59.99725 * 24 22 20 26 26 H 1.48504 * 109.47082 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46743 * 299.99475 * 24 22 20 28 28 H 1.08994 * 109.47199 * 300.00399 * 1 2 3 29 29 H 1.09005 * 109.46404 * 59.99992 * 1 2 3 30 30 H 1.08996 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47199 * 239.99601 * 2 1 3 32 32 H 1.09008 * 109.46870 * 119.99837 * 2 1 3 33 33 H 1.08004 * 126.29233 * 180.24043 * 7 5 4 34 34 H 0.97004 * 119.99983 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.47194 * 179.97438 * 14 12 11 36 36 H 1.08992 * 109.47399 * 300.00063 * 14 12 11 37 37 H 1.09004 * 109.46724 * 60.00549 * 14 12 11 38 38 H 1.09000 * 109.47325 * 54.99943 * 15 12 11 39 39 H 1.09008 * 109.47017 * 174.99852 * 15 12 11 40 40 H 1.09000 * 109.46720 * 60.00379 * 18 16 15 41 41 H 1.08998 * 109.47049 * 180.02562 * 18 16 15 42 42 H 1.08992 * 109.47227 * 299.99948 * 18 16 15 43 43 H 0.96995 * 120.00048 * 24.99698 * 19 16 15 44 44 H 0.97005 * 119.99941 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2872 2.1437 -1.0555 5 7 2.7328 3.4049 -0.6443 6 1 2.9896 4.1341 -1.2301 7 6 2.7389 3.4376 0.6980 8 6 2.3092 2.2035 1.1432 9 6 2.1609 1.7832 2.5485 10 8 1.7652 0.6635 2.8097 11 7 2.4640 2.6401 3.5437 12 6 2.3161 2.2226 4.9402 13 1 2.5675 1.1660 5.0321 14 6 0.8699 2.4437 5.3881 15 6 3.2549 3.0488 5.8216 16 6 4.7067 2.7331 5.4564 17 1 4.8747 1.6586 5.5303 18 6 5.6452 3.4634 6.4192 19 7 4.9727 3.1759 4.0855 20 6 5.9688 2.5837 3.3558 21 1 6.5585 1.7905 3.7912 22 6 6.2205 3.0028 2.0566 23 7 5.5015 3.9690 1.5259 24 14 7.5788 2.1944 1.0611 25 1 7.2938 0.7438 0.9213 26 1 7.6438 2.8177 -0.2852 27 1 8.8784 2.3790 1.7557 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8901 33 1 3.0292 4.2745 1.3158 34 1 2.7800 3.5333 3.3354 35 1 0.7597 2.1327 6.4270 36 1 0.6185 3.5003 5.2963 37 1 0.2011 1.8551 4.7602 38 1 3.0628 4.1099 5.6625 39 1 3.0816 2.8012 6.8689 40 1 5.4473 3.1340 7.4392 41 1 6.6795 3.2388 6.1588 42 1 5.4774 4.5377 6.3453 43 1 4.4433 3.8884 3.6946 44 1 5.6771 4.2616 0.6179 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134853131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:31 Heat of formation + Delta-G solvation = 33.255673 kcal Electronic energy + Delta-G solvation = -25473.136750 eV Core-core repulsion = 22040.978225 eV Total energy + Delta-G solvation = -3432.158525 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70667 -38.72182 -36.59700 -34.18596 -33.61774 -32.26724 -30.90733 -29.71596 -29.13316 -28.36333 -26.29346 -23.69184 -23.62439 -22.81030 -20.82839 -20.16594 -19.45123 -18.82903 -17.62358 -17.17954 -15.83434 -15.38528 -14.80680 -14.61498 -14.22952 -13.83449 -13.75343 -13.67922 -13.49531 -13.14967 -12.81082 -12.60995 -12.33758 -12.10612 -11.87549 -11.81369 -11.74005 -11.62942 -11.10171 -10.98446 -10.84119 -10.74134 -10.68091 -10.34001 -10.29010 -10.21418 -9.90469 -9.70220 -8.99863 -8.98741 -8.86593 -8.26743 -7.95995 -6.94914 -5.88402 -3.08520 2.36938 2.80799 3.35093 3.41392 3.44530 3.49456 4.03022 4.36770 4.56814 5.07251 5.16810 5.37491 5.46070 5.51386 5.57140 5.70547 5.73499 5.76168 5.82245 5.91111 5.99872 6.03189 6.05560 6.12913 6.20615 6.26710 6.27745 6.32557 6.40465 6.49791 6.58355 6.59795 6.62915 6.67164 6.86742 7.06224 7.11317 7.34919 7.66495 7.75905 8.16336 8.33180 8.45299 9.18145 9.46934 10.00688 10.36732 11.35296 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.008329 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.299359 B = 3360.788934 C = 5098.827783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.045 4.045 3 C 0.133 3.867 4 N -0.322 5.322 5 N -0.469 5.469 6 H 0.437 0.563 7 C 0.168 3.832 8 C -0.295 4.295 9 C 0.609 3.391 10 O -0.568 6.568 11 N -0.700 5.700 12 C 0.152 3.848 13 H 0.082 0.918 14 C -0.161 4.161 15 C -0.133 4.133 16 C 0.169 3.831 17 H 0.048 0.952 18 C -0.163 4.163 19 N -0.714 5.714 20 C -0.216 4.216 21 H 0.066 0.934 22 C -0.008 4.008 23 N -0.936 5.936 24 Si 0.901 3.099 25 H -0.289 1.289 26 H -0.294 1.294 27 H -0.290 1.290 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.190 0.810 34 H 0.399 0.601 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.376 0.624 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.938 1.092 3.043 9.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 C -0.036 4.036 4 N -0.145 5.145 5 N -0.172 5.172 6 H 0.280 0.720 7 C 0.015 3.985 8 C -0.309 4.309 9 C 0.398 3.602 10 O -0.449 6.449 11 N -0.351 5.351 12 C 0.047 3.953 13 H 0.100 0.900 14 C -0.220 4.220 15 C -0.172 4.172 16 C 0.059 3.941 17 H 0.066 0.934 18 C -0.223 4.223 19 N -0.356 5.356 20 C -0.347 4.347 21 H 0.084 0.916 22 C -0.203 4.203 23 N -0.586 5.586 24 Si 0.734 3.266 25 H -0.216 1.216 26 H -0.221 1.221 27 H -0.217 1.217 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.207 0.793 34 H 0.236 0.764 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.211 0.789 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.047 0.226 1.910 9.250 hybrid contribution 1.392 0.834 -0.269 1.645 sum -7.655 1.059 1.641 7.900 Atomic orbital electron populations 1.21580 0.94644 1.01315 1.01648 1.20017 0.95887 0.88969 1.03583 1.22238 0.95597 0.96393 0.89336 1.76952 1.23396 0.91345 1.22792 1.45904 1.52601 1.12783 1.05894 0.71968 1.23286 0.90971 0.99405 0.84844 1.20054 1.21130 0.95516 0.94241 1.17076 0.75500 0.84009 0.83652 1.90628 1.49268 1.20452 1.84595 1.45770 1.67293 1.17197 1.04854 1.20734 0.93422 0.99973 0.81161 0.89974 1.22207 0.97517 1.01412 1.00861 1.22199 0.96221 0.99880 0.98874 1.20290 0.90603 0.97017 0.86173 0.93393 1.22416 1.01410 1.00561 0.97930 1.42408 1.40556 1.43228 1.09431 1.19162 1.08123 1.12997 0.94396 0.91623 1.24418 0.99779 0.99112 0.96963 1.69490 1.42625 1.31472 1.15006 0.86336 0.82016 0.78954 0.79340 1.21564 1.22059 1.21685 0.92288 0.93357 0.92539 0.91436 0.88293 0.79308 0.76425 0.92380 0.93015 0.92343 0.91897 0.90955 0.94591 0.92953 0.93665 0.78877 0.94125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.90 37.16 0.37 -1.59 16 2 C -0.05 -0.78 5.97 -27.88 -0.17 -0.94 16 3 C 0.13 2.59 6.52 -82.02 -0.53 2.05 16 4 N -0.32 -6.13 12.63 33.90 0.43 -5.71 16 5 N -0.47 -7.95 7.29 30.85 0.22 -7.72 16 6 H 0.44 5.98 8.96 -182.73 -1.64 4.34 16 7 C 0.17 3.03 10.20 -16.56 -0.17 2.86 16 8 C -0.29 -5.85 6.13 -105.07 -0.64 -6.50 16 9 C 0.61 12.32 7.78 -12.52 -0.10 12.22 16 10 O -0.57 -12.50 14.58 5.28 0.08 -12.42 16 11 N -0.70 -12.37 3.79 -54.88 -0.21 -12.58 16 12 C 0.15 2.41 2.57 -67.93 -0.17 2.24 16 13 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 14 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 15 C -0.13 -1.93 4.43 -26.74 -0.12 -2.05 16 16 C 0.17 3.04 2.89 -67.93 -0.20 2.84 16 17 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 18 C -0.16 -2.71 9.49 37.16 0.35 -2.36 16 19 N -0.71 -15.32 3.84 -53.42 -0.21 -15.52 16 20 C -0.22 -5.44 9.93 -15.06 -0.15 -5.59 16 21 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.94 -23.07 10.99 55.49 0.61 -22.46 16 24 Si 0.90 22.03 29.55 -169.99 -5.02 17.00 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 1.86 6.55 -51.92 -0.34 1.52 16 33 H 0.19 3.27 6.78 -52.48 -0.36 2.92 16 34 H 0.40 6.96 5.43 -40.82 -0.22 6.74 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.38 8.12 5.70 -40.82 -0.23 7.89 16 44 H 0.25 6.19 8.31 -40.82 -0.34 5.85 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -28.66 357.72 -8.20 -36.86 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -8.22 Total: 16.07 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.27 Total: 1.08 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: 0.85 Total: -63.99 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.66 -8.20 -36.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134853131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.120 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds