Wall clock time and date at job start Tue Mar 31 2020 03:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47063 * 2 1 4 4 N 1.30447 * 125.98617 * 270.03646 * 3 2 1 5 5 N 1.39937 * 108.89548 * 179.97438 * 4 3 2 6 6 H 0.96995 * 125.75504 * 180.02562 * 5 4 3 7 7 C 1.34264 * 108.49058 * 359.74703 * 5 4 3 8 8 C 1.38051 * 107.41658 * 0.39977 * 7 5 4 9 9 C 1.47427 * 126.41323 * 179.86626 * 8 7 5 10 10 O 1.21600 * 119.99764 * 179.68541 * 9 8 7 11 11 N 1.34779 * 119.99900 * 359.68923 * 9 8 7 12 12 C 1.46500 * 119.99793 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47092 * 34.99824 * 12 11 9 14 14 C 1.53000 * 109.47023 * 274.99565 * 12 11 9 15 15 C 1.52997 * 109.47007 * 154.99772 * 12 11 9 16 16 C 1.52994 * 109.47404 * 294.99774 * 15 12 11 17 17 H 1.09001 * 109.47698 * 305.00111 * 16 15 12 18 18 C 1.53003 * 109.47265 * 184.99783 * 16 15 12 19 19 N 1.46504 * 109.46881 * 65.00370 * 16 15 12 20 20 C 1.36937 * 119.99855 * 205.00272 * 19 16 15 21 21 H 1.08001 * 119.99967 * 359.97438 * 20 19 16 22 22 C 1.38813 * 120.00180 * 179.97438 * 20 19 16 23 23 N 1.31619 * 119.99766 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00114 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47190 * 59.99725 * 24 22 20 26 26 H 1.48504 * 109.47082 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46743 * 299.99475 * 24 22 20 28 28 H 1.08994 * 109.47199 * 300.00399 * 1 2 3 29 29 H 1.09005 * 109.46404 * 59.99992 * 1 2 3 30 30 H 1.08996 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47199 * 239.99601 * 2 1 3 32 32 H 1.09008 * 109.46870 * 119.99837 * 2 1 3 33 33 H 1.08004 * 126.29233 * 180.24043 * 7 5 4 34 34 H 0.97004 * 119.99983 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.47194 * 179.97438 * 14 12 11 36 36 H 1.08992 * 109.47399 * 300.00063 * 14 12 11 37 37 H 1.09004 * 109.46724 * 60.00549 * 14 12 11 38 38 H 1.09000 * 109.47325 * 54.99943 * 15 12 11 39 39 H 1.09008 * 109.47017 * 174.99852 * 15 12 11 40 40 H 1.09000 * 109.46720 * 60.00379 * 18 16 15 41 41 H 1.08998 * 109.47049 * 180.02562 * 18 16 15 42 42 H 1.08992 * 109.47227 * 299.99948 * 18 16 15 43 43 H 0.96995 * 120.00048 * 24.99698 * 19 16 15 44 44 H 0.97005 * 119.99941 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2872 2.1437 -1.0555 5 7 2.7328 3.4049 -0.6443 6 1 2.9896 4.1341 -1.2301 7 6 2.7389 3.4376 0.6980 8 6 2.3092 2.2035 1.1432 9 6 2.1609 1.7832 2.5485 10 8 1.7652 0.6635 2.8097 11 7 2.4640 2.6401 3.5437 12 6 2.3161 2.2226 4.9402 13 1 2.5675 1.1660 5.0321 14 6 0.8699 2.4437 5.3881 15 6 3.2549 3.0488 5.8216 16 6 4.7067 2.7331 5.4564 17 1 4.8747 1.6586 5.5303 18 6 5.6452 3.4634 6.4192 19 7 4.9727 3.1759 4.0855 20 6 5.9688 2.5837 3.3558 21 1 6.5585 1.7905 3.7912 22 6 6.2205 3.0028 2.0566 23 7 5.5015 3.9690 1.5259 24 14 7.5788 2.1944 1.0611 25 1 7.2938 0.7438 0.9213 26 1 7.6438 2.8177 -0.2852 27 1 8.8784 2.3790 1.7557 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8901 33 1 3.0292 4.2745 1.3158 34 1 2.7800 3.5333 3.3354 35 1 0.7597 2.1327 6.4270 36 1 0.6185 3.5003 5.2963 37 1 0.2011 1.8551 4.7602 38 1 3.0628 4.1099 5.6625 39 1 3.0816 2.8012 6.8689 40 1 5.4473 3.1340 7.4392 41 1 6.6795 3.2388 6.1588 42 1 5.4774 4.5377 6.3453 43 1 4.4433 3.8884 3.6946 44 1 5.6771 4.2616 0.6179 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134853131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:30 Heat of formation + Delta-G solvation = 15.675026 kcal Electronic energy + Delta-G solvation = -25473.899104 eV Core-core repulsion = 22040.978225 eV Total energy + Delta-G solvation = -3432.920879 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.16047 -40.18140 -38.11319 -35.72581 -35.01841 -33.94699 -32.39546 -31.09710 -30.68555 -29.87261 -27.52368 -25.52458 -24.93241 -24.25999 -22.19020 -21.62019 -20.90954 -20.27528 -19.13600 -18.95605 -17.32404 -16.81409 -16.53997 -16.07047 -15.73160 -15.44456 -15.29870 -15.11899 -14.84593 -14.66294 -14.23138 -14.05244 -13.68596 -13.53426 -13.27625 -13.18097 -13.10784 -12.87513 -12.74348 -12.59525 -12.35767 -12.23301 -12.18008 -12.03023 -11.69961 -11.60623 -11.54938 -11.34059 -10.84455 -10.52797 -10.32028 -9.77452 -9.42232 -8.72433 -7.84736 -5.00320 0.90639 1.30699 1.42164 1.45207 1.49092 2.00465 2.58606 2.63191 2.87206 3.52276 3.67904 3.90479 3.98096 4.08169 4.26831 4.36862 4.42497 4.49295 4.52995 4.64834 4.69697 4.73604 4.81803 4.87186 4.90865 4.93925 5.01433 5.07672 5.15549 5.20329 5.24808 5.29195 5.34915 5.45808 5.48931 5.64711 5.65952 5.69130 5.96429 6.41425 6.44313 6.71103 6.97903 7.51485 7.67160 8.22146 8.51843 9.36876 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.008329 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.299359 B = 3360.788934 C = 5098.827783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.046 4.046 3 C 0.118 3.882 4 N -0.333 5.333 5 N -0.457 5.457 6 H 0.451 0.549 7 C 0.178 3.822 8 C -0.321 4.321 9 C 0.600 3.400 10 O -0.595 6.595 11 N -0.692 5.692 12 C 0.148 3.852 13 H 0.054 0.946 14 C -0.151 4.151 15 C -0.119 4.119 16 C 0.162 3.838 17 H 0.026 0.974 18 C -0.153 4.153 19 N -0.714 5.714 20 C -0.219 4.219 21 H 0.049 0.951 22 C -0.040 4.040 23 N -0.929 5.929 24 Si 0.932 3.068 25 H -0.307 1.307 26 H -0.298 1.298 27 H -0.290 1.290 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.199 0.801 34 H 0.401 0.599 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.026 0.974 42 H 0.049 0.951 43 H 0.376 0.624 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.859 2.245 4.096 10.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 C -0.050 4.050 4 N -0.156 5.156 5 N -0.162 5.162 6 H 0.297 0.703 7 C 0.024 3.976 8 C -0.336 4.336 9 C 0.389 3.611 10 O -0.478 6.478 11 N -0.342 5.342 12 C 0.044 3.956 13 H 0.072 0.928 14 C -0.209 4.209 15 C -0.157 4.157 16 C 0.053 3.947 17 H 0.044 0.956 18 C -0.213 4.213 19 N -0.357 5.357 20 C -0.352 4.352 21 H 0.067 0.933 22 C -0.234 4.234 23 N -0.579 5.579 24 Si 0.766 3.234 25 H -0.235 1.235 26 H -0.225 1.225 27 H -0.217 1.217 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.215 0.785 34 H 0.238 0.762 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.211 0.789 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.965 1.414 2.983 10.497 hybrid contribution 1.708 0.457 -0.563 1.856 sum -8.256 1.871 2.420 8.805 Atomic orbital electron populations 1.21498 0.92661 1.02711 1.01225 1.20054 0.97589 0.87861 1.02997 1.22619 0.95701 0.97351 0.89369 1.76902 1.23816 0.92026 1.22851 1.45935 1.51706 1.12709 1.05854 0.70258 1.23320 0.90131 0.98950 0.85228 1.20270 1.22386 0.96508 0.94427 1.17269 0.75513 0.83988 0.84328 1.90602 1.50672 1.21507 1.85027 1.45776 1.66328 1.16774 1.05364 1.20880 0.95643 0.98659 0.80441 0.92800 1.22096 0.94813 1.02167 1.01808 1.22112 0.92927 1.00384 1.00271 1.20482 0.93447 0.95916 0.84824 0.95583 1.22264 0.99309 1.00590 0.99114 1.42408 1.39663 1.42950 1.10673 1.19178 1.08690 1.12553 0.94771 0.93254 1.24708 1.00959 1.00123 0.97624 1.69505 1.42476 1.31259 1.14705 0.85869 0.81489 0.77386 0.78655 1.23485 1.22459 1.21707 0.93762 0.92553 0.90262 0.90329 0.90399 0.78487 0.76214 0.89847 0.91386 0.94311 0.90378 0.87587 0.91448 0.95431 0.93168 0.78866 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.51 9.90 71.98 0.71 -2.80 16 2 C -0.05 -1.58 5.97 29.85 0.18 -1.40 16 3 C 0.12 4.59 6.52 43.52 0.28 4.87 16 4 N -0.33 -12.49 12.63 -46.68 -0.59 -13.08 16 5 N -0.46 -15.09 7.29 -56.31 -0.41 -15.50 16 6 H 0.45 11.75 8.96 -213.43 -1.91 9.84 16 7 C 0.18 6.30 10.20 84.28 0.86 7.16 16 8 C -0.32 -12.80 6.13 -20.15 -0.12 -12.92 16 9 C 0.60 24.53 7.78 86.66 0.67 25.20 16 10 O -0.59 -26.81 14.58 -4.03 -0.06 -26.87 16 11 N -0.69 -24.07 3.79 -445.80 -1.69 -25.76 16 12 C 0.15 4.49 2.57 44.99 0.12 4.61 16 13 H 0.05 1.96 7.58 -2.39 -0.02 1.94 16 14 C -0.15 -3.66 9.48 71.98 0.68 -2.97 16 15 C -0.12 -3.09 4.43 30.59 0.14 -2.96 16 16 C 0.16 5.59 2.89 44.99 0.13 5.72 16 17 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 18 C -0.15 -4.73 9.49 71.98 0.68 -4.05 16 19 N -0.71 -30.14 3.84 -322.93 -1.24 -31.39 16 20 C -0.22 -11.10 9.93 84.03 0.83 -10.26 16 21 H 0.05 2.62 7.83 -2.91 -0.02 2.60 16 22 C -0.04 -2.04 5.50 84.86 0.47 -1.58 16 23 N -0.93 -45.05 10.99 21.65 0.24 -44.82 16 24 Si 0.93 45.33 29.55 68.60 2.03 47.36 16 25 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.08 3.02 6.55 -2.38 -0.02 3.00 16 33 H 0.20 6.61 6.78 -2.91 -0.02 6.59 16 34 H 0.40 13.54 5.43 -92.71 -0.50 13.04 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.38 15.78 5.70 -92.71 -0.53 15.25 16 44 H 0.25 11.98 8.31 -92.70 -0.77 11.21 16 Total: -1.00 -61.83 357.72 1.98 -59.85 By element: Atomic # 1 Polarization: 43.51 SS G_CDS: -1.92 Total: 41.59 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 5.63 Total: 8.61 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -3.69 Total: -130.54 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.06 Total: -26.87 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -61.83 1.98 -59.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134853131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.524 kcal (2) G-P(sol) polarization free energy of solvation -61.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds