Wall clock time and date at job start Tue Mar 31 2020 03:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34672 * 126.59369 * 2 1 4 4 N 1.34125 * 108.02102 * 180.28725 * 3 2 1 5 5 C 1.30505 * 109.25492 * 359.73029 * 4 3 2 6 6 N 1.35036 * 108.69995 * 0.02562 * 5 4 3 7 7 C 1.46504 * 126.39617 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.47063 * 265.02715 * 7 6 5 9 9 O 1.21272 * 120.00150 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99511 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99550 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47509 * 324.99724 * 11 10 8 13 13 C 1.52999 * 109.47410 * 85.00095 * 11 10 8 14 14 C 1.52998 * 109.47164 * 205.00192 * 11 10 8 15 15 C 1.52998 * 109.47384 * 64.99625 * 14 11 10 16 16 H 1.09003 * 109.47082 * 305.00221 * 15 14 11 17 17 C 1.52995 * 109.47443 * 185.00170 * 15 14 11 18 18 N 1.46498 * 109.47009 * 65.00045 * 15 14 11 19 19 C 1.36935 * 120.00239 * 204.99963 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 H 1.09001 * 109.47261 * 270.16134 * 1 2 3 28 28 H 1.09007 * 109.47702 * 30.16290 * 1 2 3 29 29 H 1.09000 * 109.47416 * 150.16395 * 1 2 3 30 30 H 1.08000 * 125.98792 * 0.05110 * 3 2 1 31 31 H 1.08001 * 125.64419 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47099 * 145.02771 * 7 6 5 33 33 H 1.08994 * 109.46977 * 25.02663 * 7 6 5 34 34 H 0.96994 * 120.00258 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.47346 * 179.97438 * 13 11 10 36 36 H 1.09003 * 109.47191 * 299.99550 * 13 11 10 37 37 H 1.08996 * 109.47126 * 60.00048 * 13 11 10 38 38 H 1.08997 * 109.46877 * 305.00014 * 14 11 10 39 39 H 1.08999 * 109.47306 * 185.00166 * 14 11 10 40 40 H 1.09004 * 109.47411 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.47329 * 300.00343 * 17 15 14 42 42 H 1.09003 * 109.46933 * 60.00266 * 17 15 14 43 43 H 0.97004 * 119.99747 * 25.00702 * 18 15 14 44 44 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5811 0.6541 -0.0064 5 6 3.5967 -0.6509 -0.0046 6 7 2.3229 -1.0990 0.0026 7 6 1.8942 -2.5000 0.0063 8 6 1.6221 -2.9458 -1.4074 9 8 1.7719 -2.1699 -2.3274 10 7 1.2132 -4.2071 -1.6492 11 6 0.9492 -4.6406 -3.0235 12 1 0.5296 -3.8106 -3.5921 13 6 2.2566 -5.0957 -3.6748 14 6 -0.0453 -5.8032 -3.0093 15 6 -1.3926 -5.3155 -2.4728 16 1 -1.2491 -4.8544 -1.4956 17 6 -2.3490 -6.5024 -2.3411 18 7 -1.9596 -4.3318 -3.3985 19 6 -2.8492 -3.3958 -2.9426 20 1 -3.1324 -3.3826 -1.9004 21 6 -3.3869 -2.4640 -3.8198 22 7 -3.0375 -2.4767 -5.0887 23 14 -4.5998 -1.1868 -3.1977 24 1 -5.0174 -0.3116 -4.3224 25 1 -5.7915 -1.8697 -2.6329 26 1 -3.9548 -0.3639 -2.1433 27 1 -0.3634 0.0029 1.0277 28 1 -0.3635 0.8885 -0.5164 29 1 -0.3634 -0.8914 -0.5113 30 1 1.9865 2.1117 0.0008 31 1 4.4818 -1.2698 -0.0089 32 1 0.9858 -2.6004 0.6002 33 1 2.6806 -3.1193 0.4375 34 1 1.0937 -4.8277 -0.9135 35 1 2.0601 -5.4187 -4.6972 36 1 2.9651 -4.2674 -3.6850 37 1 2.6761 -5.9257 -3.1063 38 1 0.3347 -6.5985 -2.3681 39 1 -0.1739 -6.1837 -4.0226 40 1 -3.3087 -6.1550 -1.9585 41 1 -2.4924 -6.9636 -3.3183 42 1 -1.9271 -7.2343 -1.6523 43 1 -1.7050 -4.3435 -4.3344 44 1 -2.4074 -3.1397 -5.4117 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135028809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:22 Heat of formation + Delta-G solvation = 29.271952 kcal Electronic energy + Delta-G solvation = -24609.578736 eV Core-core repulsion = 21177.247464 eV Total energy + Delta-G solvation = -3432.331272 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.05666 -39.66838 -37.08322 -34.76094 -33.96703 -32.44637 -31.80785 -30.94085 -28.38680 -27.63514 -26.46442 -26.27712 -23.48975 -22.05543 -21.32900 -20.69592 -20.00555 -19.70814 -17.67604 -17.27944 -17.13818 -15.91240 -15.34464 -15.09225 -14.69526 -14.37548 -14.22683 -13.71888 -13.60874 -13.46199 -13.27036 -13.18076 -12.91863 -12.61345 -12.45119 -12.22806 -12.21140 -12.09916 -11.78759 -11.77991 -11.12059 -10.79449 -10.57485 -10.54302 -10.21966 -10.18525 -9.98124 -9.86081 -9.32813 -9.17862 -8.94737 -8.91500 -8.15576 -7.04102 -6.08978 -3.09253 2.02783 2.61503 2.65933 3.25891 3.35461 3.49391 3.52987 3.70898 4.49349 4.58917 4.66505 4.76223 4.79453 4.82327 4.96575 5.23346 5.29927 5.32482 5.50475 5.56740 5.59820 5.67945 5.71807 5.77666 5.84087 5.89047 5.95759 6.11205 6.12773 6.19114 6.27257 6.38449 6.46829 6.49324 6.61186 6.75103 6.86519 6.92481 7.20340 7.53455 7.77877 8.16331 8.26473 8.75540 9.22251 10.08552 10.23155 11.39092 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.005798 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.033680 B = 4828.113241 C = 6484.632215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.002 4.002 3 C -0.035 4.035 4 N -0.493 5.493 5 C 0.181 3.819 6 N -0.441 5.441 7 C 0.085 3.915 8 C 0.495 3.505 9 O -0.511 6.511 10 N -0.713 5.713 11 C 0.146 3.854 12 H 0.102 0.898 13 C -0.161 4.161 14 C -0.132 4.132 15 C 0.178 3.822 16 H 0.046 0.954 17 C -0.165 4.165 18 N -0.732 5.732 19 C -0.328 4.328 20 H 0.060 0.940 21 C -0.042 4.042 22 N -0.941 5.941 23 Si 1.074 2.926 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.295 1.295 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.167 0.833 31 H 0.200 0.800 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.395 0.605 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.035 0.965 43 H 0.365 0.635 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.579 -6.104 12.401 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C -0.182 4.182 4 N -0.210 5.210 5 C -0.100 4.100 6 N -0.125 5.125 7 C -0.042 4.042 8 C 0.278 3.722 9 O -0.384 6.384 10 N -0.365 5.365 11 C 0.042 3.958 12 H 0.120 0.880 13 C -0.219 4.219 14 C -0.171 4.171 15 C 0.068 3.932 16 H 0.064 0.936 17 C -0.226 4.226 18 N -0.375 5.375 19 C -0.459 4.459 20 H 0.078 0.922 21 C -0.240 4.240 22 N -0.586 5.586 23 Si 0.905 3.095 24 H -0.210 1.210 25 H -0.224 1.224 26 H -0.223 1.223 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.185 0.815 31 H 0.217 0.783 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.229 0.771 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.199 0.801 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.324 -3.805 11.484 15.904 hybrid contribution 0.187 -2.407 0.494 2.464 sum 10.511 -6.212 11.978 17.104 Atomic orbital electron populations 1.20267 0.86959 1.04562 1.02221 1.21309 0.94701 0.86524 1.09048 1.21971 0.88325 0.98371 1.09537 1.70215 1.22572 1.08737 1.19504 1.24758 0.86860 0.91883 1.06534 1.44834 1.07417 1.05311 1.54968 1.21667 1.04269 0.81552 0.96736 1.20562 0.78230 0.82638 0.90798 1.90822 1.49928 1.52466 1.45233 1.45891 1.68629 1.12092 1.09871 1.21021 0.94231 0.98599 0.81945 0.88022 1.22182 0.97929 1.00999 1.00829 1.22197 0.96068 0.96399 1.02450 1.20141 0.89592 0.89487 0.93980 0.93646 1.22447 1.01262 0.98678 1.00168 1.42407 1.52910 1.35075 1.07089 1.19909 1.20597 1.10013 0.95401 0.92170 1.25671 1.02762 1.00771 0.94814 1.70880 1.35818 1.37671 1.14255 0.83322 0.75358 0.75909 0.74863 1.21005 1.22394 1.22258 0.91118 0.89713 0.91113 0.81525 0.78322 0.86335 0.86150 0.77112 0.91663 0.92517 0.92963 0.91821 0.90682 0.92814 0.93641 0.94602 0.80129 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.08 36.00 0.36 -0.77 16 2 C 0.00 -0.03 6.95 -81.60 -0.57 -0.59 16 3 C -0.04 -0.55 11.79 -17.81 -0.21 -0.76 16 4 N -0.49 -7.99 11.25 -14.67 -0.17 -8.15 16 5 C 0.18 2.48 12.56 -90.38 -1.13 1.34 16 6 N -0.44 -5.96 2.24 -115.27 -0.26 -6.22 16 7 C 0.09 0.87 6.27 -5.19 -0.03 0.84 16 8 C 0.49 7.16 7.86 -10.98 -0.09 7.07 16 9 O -0.51 -10.32 16.09 5.56 0.09 -10.23 16 10 N -0.71 -8.89 4.45 -53.81 -0.24 -9.13 16 11 C 0.15 2.16 2.52 -67.93 -0.17 1.99 16 12 H 0.10 2.06 7.06 -51.93 -0.37 1.70 16 13 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 14 C -0.13 -1.85 4.29 -26.73 -0.11 -1.96 16 15 C 0.18 3.17 2.84 -67.93 -0.19 2.98 16 16 H 0.05 0.82 7.56 -51.93 -0.39 0.43 16 17 C -0.17 -2.75 9.49 37.16 0.35 -2.40 16 18 N -0.73 -17.21 4.49 -53.43 -0.24 -17.45 16 19 C -0.33 -8.89 9.93 -15.06 -0.15 -9.04 16 20 H 0.06 1.61 7.83 -52.48 -0.41 1.20 16 21 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 16 22 N -0.94 -29.09 13.70 55.49 0.76 -28.33 16 23 Si 1.07 25.94 29.92 -169.99 -5.09 20.86 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 30 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.12 1.02 8.03 -51.93 -0.42 0.60 16 33 H 0.12 0.73 8.13 -51.93 -0.42 0.30 16 34 H 0.40 3.51 8.60 -40.82 -0.35 3.16 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.37 9.11 6.63 -40.82 -0.27 8.84 16 44 H 0.25 7.76 6.77 -40.82 -0.28 7.48 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -36.79 369.12 -8.45 -45.24 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -7.19 Total: 12.15 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.69 Total: -4.30 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.14 Total: -69.28 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.09 Total: 20.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.79 -8.45 -45.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135028809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.514 kcal (2) G-P(sol) polarization free energy of solvation -36.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds