Wall clock time and date at job start Tue Mar 31 2020 03:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34672 * 126.59369 * 2 1 4 4 N 1.34125 * 108.02102 * 180.28725 * 3 2 1 5 5 C 1.30505 * 109.25492 * 359.73029 * 4 3 2 6 6 N 1.35036 * 108.69995 * 0.02562 * 5 4 3 7 7 C 1.46504 * 126.39617 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.47063 * 265.02715 * 7 6 5 9 9 O 1.21272 * 120.00150 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99511 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99550 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47509 * 324.99724 * 11 10 8 13 13 C 1.52999 * 109.47410 * 85.00095 * 11 10 8 14 14 C 1.52998 * 109.47164 * 205.00192 * 11 10 8 15 15 C 1.52998 * 109.47384 * 64.99625 * 14 11 10 16 16 H 1.09003 * 109.47082 * 305.00221 * 15 14 11 17 17 C 1.52995 * 109.47443 * 185.00170 * 15 14 11 18 18 N 1.46498 * 109.47009 * 65.00045 * 15 14 11 19 19 C 1.36935 * 120.00239 * 204.99963 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 H 1.09001 * 109.47261 * 270.16134 * 1 2 3 28 28 H 1.09007 * 109.47702 * 30.16290 * 1 2 3 29 29 H 1.09000 * 109.47416 * 150.16395 * 1 2 3 30 30 H 1.08000 * 125.98792 * 0.05110 * 3 2 1 31 31 H 1.08001 * 125.64419 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47099 * 145.02771 * 7 6 5 33 33 H 1.08994 * 109.46977 * 25.02663 * 7 6 5 34 34 H 0.96994 * 120.00258 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.47346 * 179.97438 * 13 11 10 36 36 H 1.09003 * 109.47191 * 299.99550 * 13 11 10 37 37 H 1.08996 * 109.47126 * 60.00048 * 13 11 10 38 38 H 1.08997 * 109.46877 * 305.00014 * 14 11 10 39 39 H 1.08999 * 109.47306 * 185.00166 * 14 11 10 40 40 H 1.09004 * 109.47411 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.47329 * 300.00343 * 17 15 14 42 42 H 1.09003 * 109.46933 * 60.00266 * 17 15 14 43 43 H 0.97004 * 119.99747 * 25.00702 * 18 15 14 44 44 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5811 0.6541 -0.0064 5 6 3.5967 -0.6509 -0.0046 6 7 2.3229 -1.0990 0.0026 7 6 1.8942 -2.5000 0.0063 8 6 1.6221 -2.9458 -1.4074 9 8 1.7719 -2.1699 -2.3274 10 7 1.2132 -4.2071 -1.6492 11 6 0.9492 -4.6406 -3.0235 12 1 0.5296 -3.8106 -3.5921 13 6 2.2566 -5.0957 -3.6748 14 6 -0.0453 -5.8032 -3.0093 15 6 -1.3926 -5.3155 -2.4728 16 1 -1.2491 -4.8544 -1.4956 17 6 -2.3490 -6.5024 -2.3411 18 7 -1.9596 -4.3318 -3.3985 19 6 -2.8492 -3.3958 -2.9426 20 1 -3.1324 -3.3826 -1.9004 21 6 -3.3869 -2.4640 -3.8198 22 7 -3.0375 -2.4767 -5.0887 23 14 -4.5998 -1.1868 -3.1977 24 1 -5.0174 -0.3116 -4.3224 25 1 -5.7915 -1.8697 -2.6329 26 1 -3.9548 -0.3639 -2.1433 27 1 -0.3634 0.0029 1.0277 28 1 -0.3635 0.8885 -0.5164 29 1 -0.3634 -0.8914 -0.5113 30 1 1.9865 2.1117 0.0008 31 1 4.4818 -1.2698 -0.0089 32 1 0.9858 -2.6004 0.6002 33 1 2.6806 -3.1193 0.4375 34 1 1.0937 -4.8277 -0.9135 35 1 2.0601 -5.4187 -4.6972 36 1 2.9651 -4.2674 -3.6850 37 1 2.6761 -5.9257 -3.1063 38 1 0.3347 -6.5985 -2.3681 39 1 -0.1739 -6.1837 -4.0226 40 1 -3.3087 -6.1550 -1.9585 41 1 -2.4924 -6.9636 -3.3183 42 1 -1.9271 -7.2343 -1.6523 43 1 -1.7050 -4.3435 -4.3344 44 1 -2.4074 -3.1397 -5.4117 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135028809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:22 Heat of formation + Delta-G solvation = 4.230118 kcal Electronic energy + Delta-G solvation = -24610.664632 eV Core-core repulsion = 21177.247464 eV Total energy + Delta-G solvation = -3433.417167 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.10910 -40.84499 -38.49427 -36.30761 -35.03407 -34.18740 -32.90960 -32.18030 -30.18786 -28.60862 -27.66955 -27.36453 -25.55030 -23.21286 -22.39634 -21.95628 -21.36107 -20.79031 -19.47685 -18.58246 -18.17130 -17.06282 -16.74363 -16.43085 -16.02180 -15.84134 -15.47076 -15.42927 -14.79517 -14.68835 -14.57196 -14.42918 -13.97824 -13.67807 -13.60858 -13.51871 -13.33955 -13.22369 -13.11166 -12.93635 -12.77337 -12.53552 -12.20704 -11.93342 -11.88132 -11.58936 -11.41370 -11.17981 -10.98498 -10.90342 -10.43365 -10.09631 -9.25636 -9.05558 -8.33887 -5.26003 0.95589 1.52919 1.53109 1.63318 1.71600 1.78413 2.16359 2.31781 2.71466 3.44970 3.60623 3.71691 3.75585 3.78657 3.85075 3.90373 4.04307 4.09300 4.21168 4.29012 4.45332 4.49383 4.59590 4.65470 4.70866 4.74303 4.82830 4.85099 4.93806 4.99024 5.01554 5.13826 5.25305 5.33454 5.37962 5.53056 5.54103 5.64671 5.76691 6.21216 6.52854 6.54313 7.08154 7.15402 7.24887 8.05809 8.18054 9.18221 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.005798 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.033680 B = 4828.113241 C = 6484.632215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.019 4.019 3 C -0.057 4.057 4 N -0.530 5.530 5 C 0.186 3.814 6 N -0.444 5.444 7 C 0.089 3.911 8 C 0.489 3.511 9 O -0.579 6.579 10 N -0.697 5.697 11 C 0.150 3.850 12 H 0.038 0.962 13 C -0.150 4.150 14 C -0.118 4.118 15 C 0.169 3.831 16 H 0.048 0.952 17 C -0.157 4.157 18 N -0.745 5.745 19 C -0.311 4.311 20 H 0.064 0.936 21 C -0.109 4.109 22 N -0.981 5.981 23 Si 1.115 2.885 24 H -0.299 1.299 25 H -0.275 1.275 26 H -0.278 1.278 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.176 0.824 31 H 0.237 0.763 32 H 0.141 0.859 33 H 0.175 0.825 34 H 0.418 0.582 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.354 0.646 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.463 -8.659 15.325 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.134 4.134 3 C -0.203 4.203 4 N -0.249 5.249 5 C -0.096 4.096 6 N -0.127 5.127 7 C -0.037 4.037 8 C 0.275 3.725 9 O -0.457 6.457 10 N -0.350 5.350 11 C 0.045 3.955 12 H 0.056 0.944 13 C -0.209 4.209 14 C -0.157 4.157 15 C 0.061 3.939 16 H 0.066 0.934 17 C -0.216 4.216 18 N -0.387 5.387 19 C -0.443 4.443 20 H 0.082 0.918 21 C -0.300 4.300 22 N -0.630 5.630 23 Si 0.941 3.059 24 H -0.226 1.226 25 H -0.201 1.201 26 H -0.204 1.204 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.193 0.807 31 H 0.253 0.747 32 H 0.158 0.842 33 H 0.192 0.808 34 H 0.255 0.745 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.185 0.815 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 11.207 -6.458 14.497 19.428 hybrid contribution -0.030 -1.719 -0.372 1.760 sum 11.176 -8.177 14.125 19.781 Atomic orbital electron populations 1.20221 0.86552 1.02979 1.03533 1.21509 0.95210 0.87243 1.09398 1.22271 0.88608 0.99271 1.10161 1.70186 1.23013 1.10454 1.21213 1.25520 0.87999 0.91683 1.04435 1.45006 1.07165 1.06231 1.54337 1.21994 1.07266 0.80464 0.93935 1.21351 0.76888 0.82341 0.91954 1.90806 1.52943 1.54295 1.47695 1.45731 1.67399 1.12166 1.09731 1.20757 0.95375 0.96726 0.82678 0.94388 1.22072 0.96159 1.01326 1.01314 1.22095 0.93460 0.96949 1.03173 1.20472 0.91626 0.88786 0.92972 0.93438 1.22307 0.99746 0.98759 1.00829 1.42656 1.52657 1.35873 1.07479 1.20234 1.19323 1.09479 0.95247 0.91783 1.26940 1.05036 1.03379 0.94682 1.70989 1.37574 1.38701 1.15769 0.82800 0.74499 0.74176 0.74455 1.22577 1.20130 1.20419 0.88298 0.90237 0.93624 0.80727 0.74654 0.84163 0.80765 0.74452 0.91684 0.94543 0.89346 0.86942 0.91060 0.95356 0.94320 0.90122 0.81472 0.94818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.05 10.08 71.23 0.72 -1.33 16 2 C -0.02 -0.56 6.95 40.95 0.28 -0.28 16 3 C -0.06 -1.79 11.79 83.52 0.98 -0.80 16 4 N -0.53 -17.01 11.25 -200.31 -2.25 -19.26 16 5 C 0.19 4.75 12.56 180.26 2.26 7.01 16 6 N -0.44 -11.24 2.24 -518.61 -1.16 -12.40 16 7 C 0.09 1.54 6.27 85.63 0.54 2.08 16 8 C 0.49 13.51 7.86 87.66 0.69 14.20 16 9 O -0.58 -24.01 16.09 -3.01 -0.05 -24.06 16 10 N -0.70 -15.68 4.45 -442.54 -1.97 -17.65 16 11 C 0.15 4.28 2.52 44.99 0.11 4.39 16 12 H 0.04 1.61 7.06 -2.39 -0.02 1.59 16 13 C -0.15 -3.56 9.48 71.98 0.68 -2.87 16 14 C -0.12 -2.98 4.29 30.59 0.13 -2.84 16 15 C 0.17 5.71 2.84 44.99 0.13 5.84 16 16 H 0.05 1.59 7.56 -2.39 -0.02 1.57 16 17 C -0.16 -4.79 9.49 71.98 0.68 -4.10 16 18 N -0.74 -35.49 4.49 -322.95 -1.45 -36.94 16 19 C -0.31 -17.02 9.93 84.03 0.83 -16.18 16 20 H 0.06 3.40 7.83 -2.91 -0.02 3.37 16 21 C -0.11 -6.43 5.50 84.86 0.47 -5.96 16 22 N -0.98 -63.15 13.70 21.65 0.30 -62.85 16 23 Si 1.11 53.04 29.92 68.60 2.05 55.10 16 24 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.04 1.46 7.95 -2.39 -0.02 1.44 16 30 H 0.18 4.79 8.06 -2.91 -0.02 4.76 16 31 H 0.24 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.14 1.88 8.03 -2.39 -0.02 1.86 16 33 H 0.18 1.13 8.13 -2.39 -0.02 1.11 16 34 H 0.42 5.54 8.60 -92.71 -0.80 4.74 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.11 1.80 8.14 -2.39 -0.02 1.79 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.35 18.37 6.63 -92.71 -0.61 17.76 16 44 H 0.24 15.52 6.77 -92.71 -0.63 14.90 16 Total: -1.00 -87.03 369.12 3.71 -83.32 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -0.28 Total: 35.60 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 8.52 Total: -0.86 kcal Atomic # 7 Polarization: -142.57 SS G_CDS: -6.54 Total: -149.11 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 53.04 SS G_CDS: 2.05 Total: 55.10 kcal Total: -87.03 3.71 -83.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135028809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.555 kcal (2) G-P(sol) polarization free energy of solvation -87.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds