Wall clock time and date at job start Tue Mar 31 2020 03:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46623 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46953 * 179.97438 * 5 4 3 7 7 C 1.35360 * 126.38352 * 85.00154 * 6 5 4 8 8 C 1.41507 * 105.50310 * 179.97438 * 7 6 5 9 9 C 1.47713 * 126.52016 * 179.97438 * 8 7 6 10 10 O 1.21567 * 119.99891 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00083 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00328 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47383 * 179.97438 * 12 11 9 14 14 N 1.46498 * 109.46844 * 180.02562 * 13 12 11 15 15 C 1.36935 * 119.99916 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99852 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00089 * 179.97438 * 15 14 13 18 18 N 1.31611 * 120.00176 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99765 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47228 * 59.99954 * 19 17 15 21 21 H 1.48499 * 109.47010 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47013 * 299.99755 * 19 17 15 23 23 N 1.31810 * 106.95964 * 359.97438 * 8 7 6 24 24 N 1.28464 * 110.07537 * 359.76026 * 23 8 7 25 25 H 0.97003 * 124.88382 * 180.23356 * 24 23 8 26 26 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 27 27 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 28 28 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 30 30 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 31 31 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 32 32 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 33 33 H 1.09000 * 109.47050 * 299.99699 * 4 3 2 34 34 H 1.09001 * 109.46801 * 59.99811 * 4 3 2 35 35 H 1.09000 * 109.47486 * 299.99829 * 5 4 3 36 36 H 1.09001 * 109.47362 * 60.00551 * 5 4 3 37 37 H 1.08001 * 127.25438 * 359.94274 * 7 6 5 38 38 H 0.96999 * 120.00177 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.46847 * 300.00057 * 12 11 9 40 40 H 1.09001 * 109.47091 * 59.99472 * 12 11 9 41 41 H 1.08997 * 109.46783 * 299.99938 * 13 12 11 42 42 H 1.08995 * 109.46916 * 60.00219 * 13 12 11 43 43 H 0.96999 * 120.00034 * 359.97438 * 14 13 12 44 44 H 0.97007 * 120.00392 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.5871 2.8849 -0.0013 7 6 6.3901 2.7894 -1.0868 8 6 7.7122 2.8342 -0.5845 9 6 8.9566 2.7642 -1.3772 10 8 8.9014 2.6566 -2.5868 11 7 10.1531 2.8197 -0.7595 12 6 11.3874 2.7497 -1.5456 13 6 12.5942 2.8344 -0.6090 14 7 13.8283 2.7650 -1.3952 15 6 15.0441 2.8215 -0.7676 16 1 15.0931 2.9176 0.3070 17 6 16.2135 2.7552 -1.5126 18 7 16.1538 2.6376 -2.8221 19 14 17.8719 2.8330 -0.6564 20 1 17.9899 1.7015 0.2979 21 1 18.9557 2.7434 -1.6676 22 1 17.9886 4.1167 0.0810 23 7 7.6221 2.9502 0.7254 24 7 6.3882 2.9866 1.0810 25 1 6.0767 3.0719 1.9957 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9338 0.9285 0.8891 34 1 3.9330 0.9286 -0.8909 35 1 3.7164 3.3985 -0.8913 36 1 3.7172 3.3990 0.8887 37 1 6.0858 2.6978 -2.1191 38 1 10.1971 2.9060 0.2057 39 1 11.4168 1.8073 -2.0925 40 1 11.4164 3.5802 -2.2511 41 1 12.5645 3.7770 -0.0625 42 1 12.5653 2.0041 0.0966 43 1 13.7843 2.6783 -2.3603 44 1 16.9710 2.5909 -3.3427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135191173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:43 Heat of formation + Delta-G solvation = -6.597273 kcal Electronic energy + Delta-G solvation = -21946.210446 eV Core-core repulsion = 18512.323767 eV Total energy + Delta-G solvation = -3433.886678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.72577 -40.51231 -37.33244 -37.26060 -35.53877 -34.23394 -33.32006 -32.75303 -30.92800 -29.50422 -27.15829 -26.10754 -24.56247 -23.37103 -22.98506 -22.00327 -21.80190 -21.06107 -19.32763 -18.62944 -17.96508 -17.02121 -16.95331 -16.59012 -16.45244 -16.30874 -15.43805 -15.10731 -15.05415 -15.02126 -14.93617 -14.60078 -14.42409 -14.15199 -13.70128 -13.11014 -13.04157 -12.89370 -12.64693 -12.62717 -12.55445 -12.13100 -12.06557 -11.87885 -11.81249 -11.71939 -11.59915 -11.36816 -11.31061 -10.97956 -10.53060 -10.13688 -9.94706 -9.06617 -7.95924 -5.27717 0.46265 1.09023 1.48730 1.52847 1.58919 1.80862 2.16479 2.30466 2.58625 3.32498 3.37833 3.61564 3.91526 3.99408 4.01735 4.10551 4.19290 4.20564 4.28515 4.37078 4.54519 4.55468 4.58075 4.61890 4.78837 4.91105 4.93459 4.99975 5.04208 5.07380 5.11283 5.20126 5.25678 5.29687 5.33942 5.38862 5.48652 5.49906 5.56542 6.08444 6.24213 6.40875 6.84437 7.09425 7.30767 8.01693 8.26058 9.27397 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.044429 B = 0.001852 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.069339 B =15111.818765 C =15253.952568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.114 4.114 5 C -0.045 4.045 6 C 0.040 3.960 7 C -0.198 4.198 8 C -0.034 4.034 9 C 0.597 3.403 10 O -0.573 6.573 11 N -0.700 5.700 12 C 0.127 3.873 13 C 0.149 3.851 14 N -0.745 5.745 15 C -0.253 4.253 16 H 0.082 0.918 17 C -0.075 4.075 18 N -0.969 5.969 19 Si 0.981 3.019 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.276 1.276 23 N -0.265 5.265 24 N -0.360 5.360 25 H 0.462 0.538 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.160 0.840 38 H 0.417 0.583 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.375 0.625 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.697 -0.817 11.586 36.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C -0.153 4.153 4 C -0.152 4.152 5 C -0.084 4.084 6 C -0.086 4.086 7 C -0.226 4.226 8 C -0.193 4.193 9 C 0.383 3.617 10 O -0.451 6.451 11 N -0.352 5.352 12 C 0.003 3.997 13 C 0.023 3.977 14 N -0.389 5.389 15 C -0.384 4.384 16 H 0.100 0.900 17 C -0.267 4.267 18 N -0.619 5.619 19 Si 0.809 3.191 20 H -0.201 1.201 21 H -0.221 1.221 22 H -0.201 1.201 23 N -0.103 5.103 24 N -0.077 5.077 25 H 0.310 0.690 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.178 0.822 38 H 0.253 0.747 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.207 0.793 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -33.913 -0.793 11.802 35.916 hybrid contribution 0.723 -0.124 -0.242 0.772 sum -33.190 -0.917 11.561 35.158 Atomic orbital electron populations 1.21784 0.95601 1.01678 1.02050 1.21557 0.96133 0.97266 1.01762 1.21587 0.94020 0.96701 1.02967 1.21587 0.96049 0.95205 1.02382 1.20346 0.83425 0.98655 1.05958 1.21774 0.96329 1.04471 0.86074 1.21678 0.90045 1.09925 1.00945 1.21649 0.94729 1.12345 0.90607 1.17274 0.82491 0.75770 0.86167 1.90772 1.87428 1.51921 1.14958 1.45612 1.04547 1.73195 1.11809 1.21245 0.82669 1.01594 0.94210 1.20820 0.84395 0.99169 0.93360 1.42385 1.01069 1.89148 1.06287 1.19623 0.84587 1.41745 0.92437 0.90016 1.25671 1.01705 1.03110 0.96225 1.69832 1.27874 1.58492 1.05747 0.85113 0.78708 0.78308 0.76992 1.20149 1.22148 1.20142 1.73486 1.03235 1.19423 1.14151 1.43405 1.01989 1.51288 1.11026 0.68964 0.92327 0.92624 0.92974 0.92666 0.92234 0.90785 0.91368 0.91908 0.92467 0.88017 0.87802 0.82186 0.74664 0.92234 0.92215 0.94570 0.94590 0.79335 0.93866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 71.98 0.71 -0.36 16 2 C -0.13 -0.99 5.93 30.60 0.18 -0.81 16 3 C -0.12 -0.64 5.21 30.60 0.16 -0.48 16 4 C -0.11 -0.81 5.20 30.60 0.16 -0.65 16 5 C -0.05 -0.28 5.77 29.85 0.17 -0.10 16 6 C 0.04 0.56 6.48 41.40 0.27 0.83 16 7 C -0.20 -4.34 10.73 22.41 0.24 -4.10 16 8 C -0.03 -0.92 7.13 42.46 0.30 -0.62 16 9 C 0.60 20.16 7.82 86.75 0.68 20.83 16 10 O -0.57 -23.38 16.93 -3.93 -0.07 -23.44 16 11 N -0.70 -22.17 5.55 -466.10 -2.59 -24.76 16 12 C 0.13 4.74 5.79 86.38 0.50 5.24 16 13 C 0.15 6.09 6.37 86.38 0.55 6.64 16 14 N -0.75 -39.18 5.60 -343.46 -1.92 -41.11 16 15 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 16 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 17 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 18 N -0.97 -60.56 13.06 21.65 0.28 -60.27 16 19 Si 0.98 46.40 29.55 68.60 2.03 48.42 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 N -0.27 -5.84 11.92 -48.17 -0.57 -6.42 16 24 N -0.36 -4.91 6.83 -47.93 -0.33 -5.24 16 25 H 0.46 2.46 8.96 -219.99 -1.97 0.49 16 26 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 27 H 0.05 0.37 8.14 -2.39 -0.02 0.36 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 38 H 0.42 11.25 8.20 -92.71 -0.76 10.49 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.37 21.13 7.67 -92.71 -0.71 20.42 16 44 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -74.96 373.77 -0.37 -75.33 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -2.43 Total: 28.44 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 5.23 Total: 9.05 kcal Atomic # 7 Polarization: -132.66 SS G_CDS: -5.13 Total: -137.79 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.07 Total: -23.44 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -74.96 -0.37 -75.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135191173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.729 kcal (2) G-P(sol) polarization free energy of solvation -74.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds