Wall clock time and date at job start Tue Mar 31 2020 03:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39675 * 127.32403 * 2 1 4 4 N 1.30858 * 107.86347 * 179.97438 * 3 2 1 5 5 N 1.28449 * 110.93021 * 359.71419 * 4 3 2 6 6 C 1.46494 * 125.19649 * 180.28293 * 5 4 3 7 7 C 1.36603 * 109.61448 * 0.45857 * 5 4 3 8 8 C 1.47165 * 126.88411 * 179.81600 * 7 5 4 9 9 O 1.21626 * 119.99839 * 173.01119 * 8 7 5 10 10 N 1.34778 * 119.99534 * 353.01218 * 8 7 5 11 11 C 1.46506 * 119.99568 * 183.94166 * 10 8 7 12 12 H 1.08999 * 109.46655 * 327.91124 * 11 10 8 13 13 C 1.52993 * 109.47099 * 87.90613 * 11 10 8 14 14 C 1.52997 * 109.47004 * 207.90764 * 11 10 8 15 15 C 1.52998 * 109.47059 * 174.38498 * 14 11 10 16 16 H 1.09005 * 109.47113 * 55.93603 * 15 14 11 17 17 C 1.52997 * 109.47108 * 175.93125 * 15 14 11 18 18 N 1.46500 * 109.47671 * 295.93497 * 15 14 11 19 19 C 1.36933 * 120.00270 * 151.95713 * 18 15 14 20 20 H 1.07994 * 119.99992 * 5.26246 * 19 18 15 21 21 C 1.38810 * 120.00153 * 185.26668 * 19 18 15 22 22 N 1.31617 * 120.00232 * 185.29342 * 21 19 18 23 23 Si 1.86807 * 119.99644 * 5.56702 * 21 19 18 24 24 H 1.48494 * 109.46870 * 265.24027 * 23 21 19 25 25 H 1.48494 * 109.47338 * 25.24378 * 23 21 19 26 26 H 1.48500 * 109.46775 * 145.24196 * 23 21 19 27 27 H 1.09004 * 109.46950 * 270.03297 * 1 2 3 28 28 H 1.09005 * 109.47099 * 30.02598 * 1 2 3 29 29 H 1.08996 * 109.47323 * 150.02511 * 1 2 3 30 30 H 1.07997 * 126.06601 * 359.93771 * 3 2 1 31 31 H 1.09005 * 109.46856 * 260.86849 * 6 5 4 32 32 H 1.08999 * 109.46880 * 20.86554 * 6 5 4 33 33 H 1.08997 * 109.47575 * 140.86787 * 6 5 4 34 34 H 0.96989 * 120.00538 * 3.93870 * 10 8 7 35 35 H 1.08998 * 109.47484 * 180.02562 * 13 11 10 36 36 H 1.09003 * 109.47602 * 300.00361 * 13 11 10 37 37 H 1.09006 * 109.47227 * 59.99848 * 13 11 10 38 38 H 1.09002 * 109.46772 * 54.39067 * 14 11 10 39 39 H 1.08999 * 109.46956 * 294.38982 * 14 11 10 40 40 H 1.09001 * 109.47035 * 180.02562 * 17 15 14 41 41 H 1.09001 * 109.47192 * 300.00451 * 17 15 14 42 42 H 1.09000 * 109.47145 * 60.00482 * 17 15 14 43 43 H 0.96998 * 119.99429 * 331.96142 * 18 15 14 44 44 H 0.96996 * 119.99899 * 180.27514 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6748 0.0006 5 7 3.6206 -0.6093 0.0069 6 6 4.8390 -1.4226 0.0153 7 6 2.3461 -1.1007 0.0007 8 6 1.9454 -2.5168 0.0010 9 8 0.7731 -2.8171 0.1232 10 7 2.8776 -3.4808 -0.1341 11 6 2.4711 -4.8857 -0.2207 12 1 1.5696 -5.0402 0.3722 13 6 2.1894 -5.2461 -1.6806 14 6 3.5938 -5.7754 0.3168 15 6 3.1176 -7.2288 0.3573 16 1 2.7806 -7.5285 -0.6351 17 6 4.2716 -8.1315 0.7981 18 7 2.0096 -7.3536 1.3075 19 6 1.0631 -8.3274 1.1317 20 1 1.1783 -9.0563 0.3432 21 6 -0.0445 -8.3777 1.9668 22 7 -0.9001 -9.3727 1.8661 23 14 -0.3248 -7.0289 3.2285 24 1 0.2432 -7.4476 4.5351 25 1 0.3416 -5.7814 2.7760 26 1 -1.7822 -6.7856 3.3774 27 1 -0.3633 0.0006 1.0277 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3634 -0.8902 -0.5134 30 1 2.0451 2.1456 -0.0009 31 1 5.0543 -1.7649 -0.9970 32 1 5.6730 -0.8239 0.3814 33 1 4.6963 -2.2842 0.6675 34 1 3.8174 -3.2446 -0.1742 35 1 1.8865 -6.2912 -1.7450 36 1 1.3896 -4.6122 -2.0636 37 1 3.0909 -5.0915 -2.2735 38 1 3.8627 -5.4531 1.3228 39 1 4.4638 -5.6960 -0.3349 40 1 3.9324 -9.1670 0.8264 41 1 5.0960 -8.0387 0.0911 42 1 4.6085 -7.8319 1.7904 43 1 1.9464 -6.7463 2.0612 44 1 -1.6762 -9.4057 2.4470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135220332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:51 Heat of formation + Delta-G solvation = 54.889718 kcal Electronic energy + Delta-G solvation = -24383.082780 eV Core-core repulsion = 20951.862378 eV Total energy + Delta-G solvation = -3431.220402 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.77431 -39.58597 -37.16825 -35.19143 -33.99007 -32.51080 -31.95971 -30.46845 -29.17885 -28.60166 -26.45860 -26.37576 -23.81498 -23.10557 -21.38633 -20.86320 -20.47182 -19.58440 -18.02530 -17.44028 -16.62536 -16.07303 -15.78081 -15.14626 -14.92676 -14.54003 -14.01265 -13.95506 -13.67238 -13.58671 -13.54587 -12.96521 -12.80971 -12.68037 -12.57232 -12.37879 -12.32886 -12.22420 -11.87078 -11.55439 -11.17205 -10.91358 -10.81555 -10.68582 -10.50055 -10.43395 -10.06792 -9.83762 -9.56460 -9.41232 -9.14730 -8.89562 -8.81293 -7.25225 -5.75412 -3.10887 1.10713 2.15810 2.40556 3.01841 3.16591 3.41487 3.49889 3.52362 4.06074 4.39241 4.59499 4.63436 4.74903 4.84645 4.97409 5.04662 5.14536 5.16433 5.37982 5.40810 5.49226 5.55924 5.68722 5.72282 5.84616 5.86891 5.91260 6.03053 6.10316 6.13205 6.25939 6.29995 6.38353 6.42856 6.44156 6.50139 6.63112 6.78650 6.94167 7.37861 7.77688 8.00907 8.12556 8.43834 9.22361 9.95188 10.14142 11.42811 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.004453 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.697402 B = 6285.897999 C = 7257.693493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.124 4.124 3 C -0.005 4.005 4 N -0.276 5.276 5 N -0.282 5.282 6 C 0.074 3.926 7 C -0.044 4.044 8 C 0.585 3.415 9 O -0.509 6.509 10 N -0.730 5.730 11 C 0.137 3.863 12 H 0.108 0.892 13 C -0.158 4.158 14 C -0.134 4.134 15 C 0.178 3.822 16 H 0.064 0.936 17 C -0.165 4.165 18 N -0.746 5.746 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.009 3.991 22 N -0.932 5.932 23 Si 0.877 3.123 24 H -0.288 1.288 25 H -0.273 1.273 26 H -0.291 1.291 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.187 0.813 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.390 0.610 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.044 0.956 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.002 18.567 -5.903 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C -0.182 4.182 4 N -0.108 5.108 5 N -0.072 5.072 6 C -0.067 4.067 7 C -0.171 4.171 8 C 0.370 3.630 9 O -0.382 6.382 10 N -0.386 5.386 11 C 0.034 3.966 12 H 0.126 0.874 13 C -0.217 4.217 14 C -0.173 4.173 15 C 0.068 3.932 16 H 0.081 0.919 17 C -0.225 4.225 18 N -0.389 5.389 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.187 4.187 22 N -0.579 5.579 23 Si 0.707 3.293 24 H -0.214 1.214 25 H -0.198 1.198 26 H -0.217 1.217 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.204 0.796 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.228 0.772 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.192 0.808 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.227 18.362 -5.930 23.394 hybrid contribution -0.441 0.744 1.031 1.346 sum 12.786 19.106 -4.899 23.506 Atomic orbital electron populations 1.20238 0.87860 1.03122 1.02712 1.20846 0.97382 0.90545 1.04703 1.23507 0.87741 1.00050 1.06859 1.73105 1.24659 0.93403 1.19619 1.45534 1.05811 1.03946 1.51925 1.22372 0.84701 0.95195 1.04433 1.21669 0.85153 0.95119 1.15110 1.16975 0.86106 0.82700 0.77223 1.90874 1.17103 1.81863 1.48348 1.46621 1.09353 1.07750 1.74849 1.21179 1.00178 0.77387 0.97866 0.87367 1.22164 1.00990 1.03286 0.95218 1.22217 0.97016 0.97252 1.00825 1.20213 0.88257 0.90178 0.94516 0.91852 1.22408 0.98224 1.01840 0.99990 1.42790 1.27746 1.39208 1.29128 1.19026 0.98674 1.05127 1.14544 0.89233 1.24656 0.97105 0.97742 0.99186 1.69703 1.14903 1.31573 1.41766 0.86631 0.77665 0.83056 0.81952 1.21442 1.19821 1.21710 0.91032 0.91551 0.90093 0.79606 0.89072 0.87362 0.88639 0.77210 0.90092 0.92704 0.93266 0.91842 0.91635 0.92223 0.94233 0.93678 0.80775 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 9.87 36.00 0.36 -0.59 16 2 C -0.12 -1.58 6.29 -104.02 -0.65 -2.23 16 3 C 0.00 -0.05 12.00 -17.43 -0.21 -0.26 16 4 N -0.28 -3.25 11.90 30.59 0.36 -2.89 16 5 N -0.28 -3.13 3.75 -63.88 -0.24 -3.37 16 6 C 0.07 0.48 9.69 59.84 0.58 1.06 16 7 C -0.04 -0.60 6.96 -82.05 -0.57 -1.17 16 8 C 0.59 9.04 7.78 -12.64 -0.10 8.94 16 9 O -0.51 -9.87 14.74 5.25 0.08 -9.79 16 10 N -0.73 -9.40 4.90 -54.97 -0.27 -9.67 16 11 C 0.14 2.09 2.67 -67.93 -0.18 1.91 16 12 H 0.11 2.17 6.86 -51.93 -0.36 1.82 16 13 C -0.16 -2.28 9.28 37.15 0.34 -1.94 16 14 C -0.13 -1.84 4.44 -26.73 -0.12 -1.96 16 15 C 0.18 3.12 2.76 -67.93 -0.19 2.93 16 16 H 0.06 1.15 6.32 -51.93 -0.33 0.82 16 17 C -0.16 -2.62 9.51 37.16 0.35 -2.27 16 18 N -0.75 -16.87 4.19 -53.43 -0.22 -17.09 16 19 C -0.24 -6.71 10.41 -15.06 -0.16 -6.87 16 20 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 21 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 22 N -0.93 -29.34 13.97 55.49 0.78 -28.56 16 23 Si 0.88 22.66 27.69 -169.99 -4.71 17.95 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.27 -6.81 6.62 56.52 0.37 -6.44 16 26 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.11 6.83 -51.93 -0.35 0.75 16 30 H 0.19 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.09 0.42 8.04 -51.93 -0.42 0.00 16 32 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.55 6.18 -51.93 -0.32 0.23 16 34 H 0.39 3.61 4.38 -40.82 -0.18 3.43 16 35 H 0.08 1.27 6.50 -51.93 -0.34 0.93 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.36 8.22 5.82 -40.82 -0.24 7.99 16 44 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -35.20 355.90 -6.27 -41.46 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.77 Total: 8.87 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.64 Total: -2.27 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.41 Total: -61.58 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.95 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.20 -6.27 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135220332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.354 kcal (2) G-P(sol) polarization free energy of solvation -35.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds