Wall clock time and date at job start Tue Mar 31 2020 03:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39675 * 127.32403 * 2 1 4 4 N 1.30858 * 107.86347 * 179.97438 * 3 2 1 5 5 N 1.28449 * 110.93021 * 359.71419 * 4 3 2 6 6 C 1.46494 * 125.19649 * 180.28293 * 5 4 3 7 7 C 1.36603 * 109.61448 * 0.45857 * 5 4 3 8 8 C 1.47165 * 126.88411 * 179.81600 * 7 5 4 9 9 O 1.21626 * 119.99839 * 173.01119 * 8 7 5 10 10 N 1.34778 * 119.99534 * 353.01218 * 8 7 5 11 11 C 1.46506 * 119.99568 * 183.94166 * 10 8 7 12 12 H 1.08999 * 109.46655 * 327.91124 * 11 10 8 13 13 C 1.52993 * 109.47099 * 87.90613 * 11 10 8 14 14 C 1.52997 * 109.47004 * 207.90764 * 11 10 8 15 15 C 1.52998 * 109.47059 * 174.38498 * 14 11 10 16 16 H 1.09005 * 109.47113 * 55.93603 * 15 14 11 17 17 C 1.52997 * 109.47108 * 175.93125 * 15 14 11 18 18 N 1.46500 * 109.47671 * 295.93497 * 15 14 11 19 19 C 1.36933 * 120.00270 * 151.95713 * 18 15 14 20 20 H 1.07994 * 119.99992 * 5.26246 * 19 18 15 21 21 C 1.38810 * 120.00153 * 185.26668 * 19 18 15 22 22 N 1.31617 * 120.00232 * 185.29342 * 21 19 18 23 23 Si 1.86807 * 119.99644 * 5.56702 * 21 19 18 24 24 H 1.48494 * 109.46870 * 265.24027 * 23 21 19 25 25 H 1.48494 * 109.47338 * 25.24378 * 23 21 19 26 26 H 1.48500 * 109.46775 * 145.24196 * 23 21 19 27 27 H 1.09004 * 109.46950 * 270.03297 * 1 2 3 28 28 H 1.09005 * 109.47099 * 30.02598 * 1 2 3 29 29 H 1.08996 * 109.47323 * 150.02511 * 1 2 3 30 30 H 1.07997 * 126.06601 * 359.93771 * 3 2 1 31 31 H 1.09005 * 109.46856 * 260.86849 * 6 5 4 32 32 H 1.08999 * 109.46880 * 20.86554 * 6 5 4 33 33 H 1.08997 * 109.47575 * 140.86787 * 6 5 4 34 34 H 0.96989 * 120.00538 * 3.93870 * 10 8 7 35 35 H 1.08998 * 109.47484 * 180.02562 * 13 11 10 36 36 H 1.09003 * 109.47602 * 300.00361 * 13 11 10 37 37 H 1.09006 * 109.47227 * 59.99848 * 13 11 10 38 38 H 1.09002 * 109.46772 * 54.39067 * 14 11 10 39 39 H 1.08999 * 109.46956 * 294.38982 * 14 11 10 40 40 H 1.09001 * 109.47035 * 180.02562 * 17 15 14 41 41 H 1.09001 * 109.47192 * 300.00451 * 17 15 14 42 42 H 1.09000 * 109.47145 * 60.00482 * 17 15 14 43 43 H 0.96998 * 119.99429 * 331.96142 * 18 15 14 44 44 H 0.96996 * 119.99899 * 180.27514 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6748 0.0006 5 7 3.6206 -0.6093 0.0069 6 6 4.8390 -1.4226 0.0153 7 6 2.3461 -1.1007 0.0007 8 6 1.9454 -2.5168 0.0010 9 8 0.7731 -2.8171 0.1232 10 7 2.8776 -3.4808 -0.1341 11 6 2.4711 -4.8857 -0.2207 12 1 1.5696 -5.0402 0.3722 13 6 2.1894 -5.2461 -1.6806 14 6 3.5938 -5.7754 0.3168 15 6 3.1176 -7.2288 0.3573 16 1 2.7806 -7.5285 -0.6351 17 6 4.2716 -8.1315 0.7981 18 7 2.0096 -7.3536 1.3075 19 6 1.0631 -8.3274 1.1317 20 1 1.1783 -9.0563 0.3432 21 6 -0.0445 -8.3777 1.9668 22 7 -0.9001 -9.3727 1.8661 23 14 -0.3248 -7.0289 3.2285 24 1 0.2432 -7.4476 4.5351 25 1 0.3416 -5.7814 2.7760 26 1 -1.7822 -6.7856 3.3774 27 1 -0.3633 0.0006 1.0277 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3634 -0.8902 -0.5134 30 1 2.0451 2.1456 -0.0009 31 1 5.0543 -1.7649 -0.9970 32 1 5.6730 -0.8239 0.3814 33 1 4.6963 -2.2842 0.6675 34 1 3.8174 -3.2446 -0.1742 35 1 1.8865 -6.2912 -1.7450 36 1 1.3896 -4.6122 -2.0636 37 1 3.0909 -5.0915 -2.2735 38 1 3.8627 -5.4531 1.3228 39 1 4.4638 -5.6960 -0.3349 40 1 3.9324 -9.1670 0.8264 41 1 5.0960 -8.0387 0.0911 42 1 4.6085 -7.8319 1.7904 43 1 1.9464 -6.7463 2.0612 44 1 -1.6762 -9.4057 2.4470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135220332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:51 Heat of formation + Delta-G solvation = 29.373573 kcal Electronic energy + Delta-G solvation = -24384.189243 eV Core-core repulsion = 20951.862378 eV Total energy + Delta-G solvation = -3432.326865 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.63787 -40.77562 -38.57227 -36.50625 -35.03332 -34.14962 -33.18370 -31.84345 -30.75496 -29.43658 -27.65608 -27.14555 -25.49523 -24.53603 -22.46479 -21.90125 -21.60326 -20.91966 -19.68782 -18.75780 -17.47751 -17.20519 -16.88721 -16.76266 -16.00991 -15.85423 -15.57912 -15.39305 -14.67908 -14.63954 -14.39535 -14.32645 -14.17386 -13.99362 -13.68887 -13.43978 -13.39014 -13.26609 -13.16690 -12.92296 -12.82423 -12.52864 -12.27694 -12.10725 -11.88320 -11.72058 -11.68334 -11.55781 -11.13627 -10.96807 -10.40320 -10.17316 -9.72625 -9.26636 -8.02333 -5.31820 0.11652 1.31692 1.39602 1.42255 1.43605 1.54606 1.93353 2.06763 2.46812 3.31415 3.34936 3.51860 3.62074 3.86460 4.02831 4.09277 4.11674 4.19093 4.22906 4.33043 4.48092 4.49758 4.56755 4.58985 4.69987 4.81076 4.83243 4.93032 4.96727 5.02105 5.07385 5.12483 5.21575 5.24343 5.41291 5.46266 5.53497 5.61741 5.67383 5.82356 6.23731 6.33894 6.90381 7.04580 7.11374 7.89956 8.05120 9.19828 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.004453 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.697402 B = 6285.897999 C = 7257.693493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.140 4.140 3 C -0.004 4.004 4 N -0.280 5.280 5 N -0.274 5.274 6 C 0.057 3.943 7 C -0.068 4.068 8 C 0.583 3.417 9 O -0.560 6.560 10 N -0.710 5.710 11 C 0.140 3.860 12 H 0.056 0.944 13 C -0.153 4.153 14 C -0.120 4.120 15 C 0.167 3.833 16 H 0.055 0.945 17 C -0.156 4.156 18 N -0.750 5.750 19 C -0.215 4.215 20 H 0.063 0.937 21 C -0.059 4.059 22 N -0.983 5.983 23 Si 0.940 3.060 24 H -0.278 1.278 25 H -0.263 1.263 26 H -0.304 1.304 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.218 0.782 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.410 0.590 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.029 0.971 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.360 0.640 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.596 21.025 -6.220 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.151 4.151 3 C -0.180 4.180 4 N -0.113 5.113 5 N -0.065 5.065 6 C -0.082 4.082 7 C -0.194 4.194 8 C 0.369 3.631 9 O -0.437 6.437 10 N -0.367 5.367 11 C 0.035 3.965 12 H 0.074 0.926 13 C -0.211 4.211 14 C -0.159 4.159 15 C 0.059 3.941 16 H 0.073 0.927 17 C -0.216 4.216 18 N -0.393 5.393 19 C -0.346 4.346 20 H 0.080 0.920 21 C -0.251 4.251 22 N -0.634 5.634 23 Si 0.769 3.231 24 H -0.204 1.204 25 H -0.188 1.188 26 H -0.231 1.231 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.234 0.766 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.253 0.747 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.192 0.808 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.950 20.851 -6.267 27.592 hybrid contribution -1.436 -0.016 1.014 1.758 sum 15.514 20.835 -5.253 26.502 Atomic orbital electron populations 1.20207 0.87785 1.03132 1.02514 1.21146 0.97890 0.91255 1.04809 1.23980 0.87041 1.01025 1.05963 1.73114 1.24936 0.93682 1.19593 1.45901 1.06071 1.03938 1.50588 1.22823 0.83616 0.95428 1.06320 1.21476 0.86777 0.94119 1.17078 1.17280 0.85641 0.83794 0.76349 1.90851 1.19282 1.82753 1.50813 1.46375 1.10166 1.06363 1.73794 1.20943 0.99016 0.78979 0.97514 0.92586 1.22096 1.02097 1.01622 0.95269 1.22108 0.97625 0.93581 1.02573 1.20544 0.87267 0.93414 0.92880 0.92653 1.22267 0.98451 0.99311 1.01541 1.42868 1.28194 1.37916 1.30344 1.19036 0.98838 1.04554 1.12163 0.91954 1.25319 0.97657 1.00021 1.02068 1.69856 1.15950 1.33944 1.43679 0.85605 0.76645 0.80816 0.80030 1.20448 1.18779 1.23128 0.91341 0.88722 0.92819 0.76586 0.86672 0.85254 0.87861 0.74728 0.91901 0.94567 0.89503 0.90855 0.86683 0.95181 0.90094 0.93039 0.80758 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.82 9.87 71.23 0.70 -1.12 16 2 C -0.14 -3.41 6.29 -19.48 -0.12 -3.53 16 3 C 0.00 -0.09 12.00 85.19 1.02 0.94 16 4 N -0.28 -5.83 11.90 -57.14 -0.68 -6.51 16 5 N -0.27 -5.34 3.75 -356.02 -1.33 -6.67 16 6 C 0.06 0.51 9.69 127.77 1.24 1.75 16 7 C -0.07 -1.74 6.96 40.79 0.28 -1.46 16 8 C 0.58 17.74 7.78 86.59 0.67 18.41 16 9 O -0.56 -22.52 14.74 -4.11 -0.06 -22.58 16 10 N -0.71 -16.76 4.90 -446.06 -2.18 -18.94 16 11 C 0.14 4.05 2.67 44.99 0.12 4.17 16 12 H 0.06 2.27 6.86 -2.39 -0.02 2.26 16 13 C -0.15 -4.21 9.28 71.98 0.67 -3.54 16 14 C -0.12 -2.85 4.44 30.59 0.14 -2.72 16 15 C 0.17 5.51 2.76 44.99 0.12 5.63 16 16 H 0.06 1.94 6.32 -2.38 -0.02 1.92 16 17 C -0.16 -4.51 9.51 71.98 0.68 -3.83 16 18 N -0.75 -33.68 4.19 -322.95 -1.35 -35.03 16 19 C -0.21 -12.08 10.41 84.03 0.87 -11.21 16 20 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 21 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 22 N -0.98 -64.27 13.97 21.65 0.30 -63.96 16 23 Si 0.94 48.28 27.69 68.60 1.90 50.18 16 24 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.26 -12.88 6.62 99.48 0.66 -12.22 16 26 H -0.30 -16.15 7.11 99.48 0.71 -15.45 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 28 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.05 1.54 6.83 -2.39 -0.02 1.52 16 30 H 0.22 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.12 0.51 8.04 -2.38 -0.02 0.49 16 32 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.75 6.18 -2.39 -0.01 0.74 16 34 H 0.41 6.04 4.38 -92.72 -0.41 5.63 16 35 H 0.06 1.96 6.50 -2.39 -0.02 1.94 16 36 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.36 16.15 5.82 -92.71 -0.54 15.61 16 44 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -81.64 355.90 3.48 -78.16 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.02 Total: 24.96 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 6.87 Total: 0.40 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -5.25 Total: -131.12 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.06 Total: -22.58 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.90 Total: 50.18 kcal Total: -81.64 3.48 -78.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135220332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.535 kcal (2) G-P(sol) polarization free energy of solvation -81.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds