Wall clock time and date at job start Tue Mar 31 2020 03:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30860 * 125.41847 * 2 1 4 4 C 1.33318 * 109.68906 * 179.74238 * 3 2 1 5 5 C 1.36664 * 107.78325 * 0.37418 * 4 3 2 6 6 C 1.46762 * 126.84645 * 179.89555 * 5 4 3 7 7 O 1.21682 * 120.00136 * 354.60509 * 6 5 4 8 8 N 1.34778 * 120.00238 * 174.60314 * 6 5 4 9 9 C 1.46501 * 120.00223 * 184.56353 * 8 6 5 10 10 H 1.09009 * 109.46985 * 31.58649 * 9 8 6 11 11 C 1.52999 * 109.47188 * 271.59356 * 9 8 6 12 12 C 1.52991 * 109.47270 * 151.58894 * 9 8 6 13 13 C 1.53009 * 109.47066 * 183.77087 * 12 9 8 14 14 H 1.08995 * 109.46977 * 303.04359 * 13 12 9 15 15 C 1.53000 * 109.47057 * 183.03874 * 13 12 9 16 16 N 1.46499 * 109.46756 * 63.04289 * 13 12 9 17 17 C 1.36936 * 119.99722 * 208.38764 * 16 13 12 18 18 H 1.08003 * 120.00110 * 4.98571 * 17 16 13 19 19 C 1.38819 * 120.00066 * 184.98235 * 17 16 13 20 20 N 1.31611 * 119.99809 * 184.68943 * 19 17 16 21 21 Si 1.86797 * 119.99798 * 4.68917 * 19 17 16 22 22 H 1.48497 * 109.47350 * 94.22252 * 21 19 17 23 23 H 1.48502 * 109.46784 * 214.22296 * 21 19 17 24 24 H 1.48503 * 109.47016 * 334.21962 * 21 19 17 25 25 N 1.34490 * 125.42179 * 179.97438 * 2 1 3 26 26 C 1.46501 * 126.47203 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47134 * 270.02773 * 1 2 3 28 28 H 1.08993 * 109.47056 * 30.02729 * 1 2 3 29 29 H 1.08999 * 109.47225 * 150.03177 * 1 2 3 30 30 H 1.07998 * 126.11082 * 180.27579 * 4 3 2 31 31 H 0.96998 * 119.99748 * 4.56178 * 8 6 5 32 32 H 1.09005 * 109.46713 * 300.00289 * 11 9 8 33 33 H 1.09005 * 109.47297 * 59.99174 * 11 9 8 34 34 H 1.08996 * 109.47222 * 179.97438 * 11 9 8 35 35 H 1.08995 * 109.47534 * 303.77192 * 12 9 8 36 36 H 1.09004 * 109.47239 * 63.77544 * 12 9 8 37 37 H 1.08998 * 109.47203 * 179.97438 * 15 13 12 38 38 H 1.08998 * 109.47707 * 300.00603 * 15 13 12 39 39 H 1.09010 * 109.47124 * 60.00331 * 15 13 12 40 40 H 0.97001 * 120.00419 * 28.39281 * 16 13 12 41 41 H 0.97005 * 119.99918 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47090 * 262.68509 * 26 25 2 43 43 H 1.09000 * 109.47149 * 22.67945 * 26 25 2 44 44 H 1.09004 * 109.47418 * 142.68313 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7050 0.0056 5 6 3.5976 -0.6607 0.0009 6 6 4.8029 -1.4981 0.0022 7 8 5.9015 -0.9834 -0.0910 8 7 4.6929 -2.8374 0.1068 9 6 5.8971 -3.6655 0.2088 10 1 6.6779 -3.1090 0.7273 11 6 6.3813 -4.0365 -1.1943 12 6 5.5745 -4.9403 0.9907 13 6 6.8525 -5.7605 1.1785 14 1 7.2898 -5.9799 0.2045 15 6 6.5171 -7.0708 1.8938 16 7 7.8094 -4.9963 1.9826 17 6 9.1542 -5.1985 1.8218 18 1 9.5118 -5.8612 1.0476 19 6 10.0577 -4.5518 2.6539 20 7 11.3509 -4.6729 2.4415 21 14 9.4380 -3.5095 4.0748 22 1 9.4032 -4.3299 5.3121 23 1 10.3475 -2.3525 4.2734 24 1 8.0707 -3.0176 3.7683 25 7 2.2865 -1.0960 0.0005 26 6 1.8312 -2.4884 0.0006 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5133 30 1 4.3978 1.3723 0.0112 31 1 3.8165 -3.2528 0.1144 32 1 5.6004 -4.5929 -1.7128 33 1 6.6110 -3.1282 -1.7514 34 1 7.2775 -4.6522 -1.1184 35 1 5.1665 -4.6750 1.9660 36 1 4.8424 -5.5298 0.4387 37 1 7.4274 -7.6553 2.0272 38 1 6.0797 -6.8514 2.8678 39 1 5.8050 -7.6394 1.2956 40 1 7.4904 -4.3471 2.6289 41 1 11.9823 -4.2207 3.0227 42 1 1.8422 -2.8743 1.0200 43 1 0.8171 -2.5392 -0.3960 44 1 2.4953 -3.0880 -0.6221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135303724.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:04 Heat of formation + Delta-G solvation = 38.003461 kcal Electronic energy + Delta-G solvation = -24135.433640 eV Core-core repulsion = 20703.480995 eV Total energy + Delta-G solvation = -3431.952645 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.53432 -39.50794 -37.13084 -35.20233 -34.22960 -32.48696 -32.07240 -30.52751 -29.16916 -28.17654 -27.08288 -26.43187 -23.78903 -23.08394 -21.13806 -20.85537 -20.34161 -19.63855 -17.99906 -17.44852 -16.52238 -16.15154 -15.99118 -15.14224 -14.78533 -14.67623 -14.11016 -13.94781 -13.90551 -13.84773 -13.52773 -13.12755 -13.01748 -12.83348 -12.71688 -12.53578 -12.38999 -12.23566 -11.82002 -11.50850 -11.14449 -10.93803 -10.66696 -10.58305 -10.50634 -10.36258 -10.03158 -10.01545 -9.78939 -9.56374 -9.11966 -8.91798 -8.63182 -7.25022 -5.74528 -3.09895 1.12368 2.21459 2.61300 3.09310 3.30818 3.41367 3.43797 3.50181 4.02816 4.10846 4.29514 4.48499 4.62488 4.67184 4.90665 4.98784 5.04836 5.13417 5.16388 5.29178 5.40926 5.47579 5.50100 5.57053 5.70917 5.72709 5.87242 5.91979 6.04623 6.15171 6.26723 6.31865 6.33271 6.41134 6.51516 6.64423 6.73054 6.79855 6.94164 7.41206 7.71143 8.01903 8.16975 8.44537 9.23286 9.95986 10.15239 11.43764 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.003889 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.910675 B = 7197.871175 C = 7833.084780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.227 3.773 3 N -0.496 5.496 4 C 0.068 3.932 5 C -0.089 4.089 6 C 0.590 3.410 7 O -0.515 6.515 8 N -0.731 5.731 9 C 0.140 3.860 10 H 0.106 0.894 11 C -0.158 4.158 12 C -0.133 4.133 13 C 0.178 3.822 14 H 0.063 0.937 15 C -0.165 4.165 16 N -0.748 5.748 17 C -0.242 4.242 18 H 0.090 0.910 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.885 3.115 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 N -0.445 5.445 26 C 0.055 3.945 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.185 0.815 31 H 0.388 0.612 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.362 0.638 41 H 0.259 0.741 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.953 2.554 -6.297 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.035 4.035 3 N -0.215 5.215 4 C -0.086 4.086 5 C -0.203 4.203 6 C 0.376 3.624 7 O -0.390 6.390 8 N -0.386 5.386 9 C 0.037 3.963 10 H 0.124 0.876 11 C -0.216 4.216 12 C -0.172 4.172 13 C 0.068 3.932 14 H 0.081 0.919 15 C -0.226 4.226 16 N -0.392 5.392 17 C -0.372 4.372 18 H 0.107 0.893 19 C -0.189 4.189 20 N -0.580 5.580 21 Si 0.716 3.284 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.205 1.205 25 N -0.130 5.130 26 C -0.088 4.088 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.202 0.798 31 H 0.226 0.774 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.196 0.804 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.214 3.445 -6.431 26.249 hybrid contribution -0.421 -0.365 1.145 1.274 sum -25.636 3.080 -5.285 26.355 Atomic orbital electron populations 1.20281 0.84441 1.04314 1.03921 1.23433 0.95869 0.81250 1.02903 1.70190 1.02209 1.27892 1.21198 1.22637 0.94674 0.91305 0.99974 1.21328 0.83513 0.96083 1.19378 1.16863 0.86872 0.81763 0.76937 1.90905 1.25855 1.73176 1.49075 1.46598 1.10559 1.06245 1.75221 1.21132 0.86697 0.91420 0.97068 0.87606 1.22156 1.01743 1.01854 0.95878 1.22195 0.99654 0.95652 0.99664 1.20213 0.87860 0.89808 0.95303 0.91863 1.22427 1.00846 0.99263 1.00025 1.42915 1.03207 1.46380 1.46704 1.19034 0.80404 1.23902 1.13868 0.89251 1.24668 0.95056 1.00080 0.99101 1.69700 1.00183 1.47661 1.40448 0.86538 0.77751 0.80331 0.83788 1.21344 1.21743 1.20548 1.45267 1.05956 1.07745 1.54031 1.22360 1.02583 0.79407 1.04461 0.89675 0.88738 0.90606 0.79813 0.77385 0.93466 0.92553 0.90102 0.91935 0.91785 0.92180 0.93761 0.94292 0.80450 0.93090 0.89309 0.88128 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.16 36.00 0.37 0.00 16 2 C 0.23 2.27 7.88 -155.62 -1.23 1.04 16 3 N -0.50 -6.51 11.20 -10.58 -0.12 -6.63 16 4 C 0.07 0.94 11.66 -17.48 -0.20 0.74 16 5 C -0.09 -1.19 6.91 -82.14 -0.57 -1.75 16 6 C 0.59 9.20 7.77 -12.82 -0.10 9.11 16 7 O -0.52 -10.26 16.56 5.21 0.09 -10.17 16 8 N -0.73 -9.49 4.97 -55.09 -0.27 -9.77 16 9 C 0.14 2.17 2.60 -67.94 -0.18 1.99 16 10 H 0.11 2.13 6.98 -51.92 -0.36 1.77 16 11 C -0.16 -2.34 9.25 37.16 0.34 -2.00 16 12 C -0.13 -1.85 4.48 -26.73 -0.12 -1.97 16 13 C 0.18 3.15 2.73 -67.93 -0.19 2.97 16 14 H 0.06 1.15 6.29 -51.93 -0.33 0.83 16 15 C -0.17 -2.67 9.52 37.16 0.35 -2.32 16 16 N -0.75 -17.09 4.17 -53.42 -0.22 -17.31 16 17 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 18 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -29.47 13.97 55.49 0.78 -28.69 16 21 Si 0.89 22.75 28.00 -169.99 -4.76 17.99 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 24 H -0.28 -6.81 6.16 56.52 0.35 -6.47 16 25 N -0.45 -4.32 3.17 -117.27 -0.37 -4.69 16 26 C 0.05 0.27 9.57 59.85 0.57 0.85 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.20 6.94 -51.93 -0.36 -0.16 16 30 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 31 H 0.39 3.63 4.42 -40.82 -0.18 3.45 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.31 6.46 -51.93 -0.34 0.98 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.51 8.14 -51.92 -0.42 0.08 16 40 H 0.36 8.40 5.57 -40.82 -0.23 8.17 16 41 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.21 6.81 -51.93 -0.35 -0.15 16 44 H 0.09 0.44 6.00 -51.93 -0.31 0.12 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -36.22 356.19 -7.43 -43.66 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.72 Total: 8.35 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -1.20 Total: 1.90 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -0.21 Total: -67.10 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.76 Total: 17.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.22 -7.43 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135303724.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.660 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds