Wall clock time and date at job start Tue Mar 31 2020 03:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30860 * 125.41847 * 2 1 4 4 C 1.33318 * 109.68906 * 179.74238 * 3 2 1 5 5 C 1.36664 * 107.78325 * 0.37418 * 4 3 2 6 6 C 1.46762 * 126.84645 * 179.89555 * 5 4 3 7 7 O 1.21682 * 120.00136 * 354.60509 * 6 5 4 8 8 N 1.34778 * 120.00238 * 174.60314 * 6 5 4 9 9 C 1.46501 * 120.00223 * 184.56353 * 8 6 5 10 10 H 1.09009 * 109.46985 * 31.58649 * 9 8 6 11 11 C 1.52999 * 109.47188 * 271.59356 * 9 8 6 12 12 C 1.52991 * 109.47270 * 151.58894 * 9 8 6 13 13 C 1.53009 * 109.47066 * 183.77087 * 12 9 8 14 14 H 1.08995 * 109.46977 * 303.04359 * 13 12 9 15 15 C 1.53000 * 109.47057 * 183.03874 * 13 12 9 16 16 N 1.46499 * 109.46756 * 63.04289 * 13 12 9 17 17 C 1.36936 * 119.99722 * 208.38764 * 16 13 12 18 18 H 1.08003 * 120.00110 * 4.98571 * 17 16 13 19 19 C 1.38819 * 120.00066 * 184.98235 * 17 16 13 20 20 N 1.31611 * 119.99809 * 184.68943 * 19 17 16 21 21 Si 1.86797 * 119.99798 * 4.68917 * 19 17 16 22 22 H 1.48497 * 109.47350 * 94.22252 * 21 19 17 23 23 H 1.48502 * 109.46784 * 214.22296 * 21 19 17 24 24 H 1.48503 * 109.47016 * 334.21962 * 21 19 17 25 25 N 1.34490 * 125.42179 * 179.97438 * 2 1 3 26 26 C 1.46501 * 126.47203 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47134 * 270.02773 * 1 2 3 28 28 H 1.08993 * 109.47056 * 30.02729 * 1 2 3 29 29 H 1.08999 * 109.47225 * 150.03177 * 1 2 3 30 30 H 1.07998 * 126.11082 * 180.27579 * 4 3 2 31 31 H 0.96998 * 119.99748 * 4.56178 * 8 6 5 32 32 H 1.09005 * 109.46713 * 300.00289 * 11 9 8 33 33 H 1.09005 * 109.47297 * 59.99174 * 11 9 8 34 34 H 1.08996 * 109.47222 * 179.97438 * 11 9 8 35 35 H 1.08995 * 109.47534 * 303.77192 * 12 9 8 36 36 H 1.09004 * 109.47239 * 63.77544 * 12 9 8 37 37 H 1.08998 * 109.47203 * 179.97438 * 15 13 12 38 38 H 1.08998 * 109.47707 * 300.00603 * 15 13 12 39 39 H 1.09010 * 109.47124 * 60.00331 * 15 13 12 40 40 H 0.97001 * 120.00419 * 28.39281 * 16 13 12 41 41 H 0.97005 * 119.99918 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47090 * 262.68509 * 26 25 2 43 43 H 1.09000 * 109.47149 * 22.67945 * 26 25 2 44 44 H 1.09004 * 109.47418 * 142.68313 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7050 0.0056 5 6 3.5976 -0.6607 0.0009 6 6 4.8029 -1.4981 0.0022 7 8 5.9015 -0.9834 -0.0910 8 7 4.6929 -2.8374 0.1068 9 6 5.8971 -3.6655 0.2088 10 1 6.6779 -3.1090 0.7273 11 6 6.3813 -4.0365 -1.1943 12 6 5.5745 -4.9403 0.9907 13 6 6.8525 -5.7605 1.1785 14 1 7.2898 -5.9799 0.2045 15 6 6.5171 -7.0708 1.8938 16 7 7.8094 -4.9963 1.9826 17 6 9.1542 -5.1985 1.8218 18 1 9.5118 -5.8612 1.0476 19 6 10.0577 -4.5518 2.6539 20 7 11.3509 -4.6729 2.4415 21 14 9.4380 -3.5095 4.0748 22 1 9.4032 -4.3299 5.3121 23 1 10.3475 -2.3525 4.2734 24 1 8.0707 -3.0176 3.7683 25 7 2.2865 -1.0960 0.0005 26 6 1.8312 -2.4884 0.0006 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5133 30 1 4.3978 1.3723 0.0112 31 1 3.8165 -3.2528 0.1144 32 1 5.6004 -4.5929 -1.7128 33 1 6.6110 -3.1282 -1.7514 34 1 7.2775 -4.6522 -1.1184 35 1 5.1665 -4.6750 1.9660 36 1 4.8424 -5.5298 0.4387 37 1 7.4274 -7.6553 2.0272 38 1 6.0797 -6.8514 2.8678 39 1 5.8050 -7.6394 1.2956 40 1 7.4904 -4.3471 2.6289 41 1 11.9823 -4.2207 3.0227 42 1 1.8422 -2.8743 1.0200 43 1 0.8171 -2.5392 -0.3960 44 1 2.4953 -3.0880 -0.6221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135303724.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:04 Heat of formation + Delta-G solvation = 11.504838 kcal Electronic energy + Delta-G solvation = -24136.582707 eV Core-core repulsion = 20703.480995 eV Total energy + Delta-G solvation = -3433.101712 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.38074 -40.72384 -38.56389 -36.47291 -35.26843 -34.15413 -33.07505 -31.92457 -30.77566 -28.85595 -27.71832 -27.65059 -25.49415 -24.49447 -22.39782 -21.89099 -21.23726 -20.98508 -19.68903 -18.71882 -17.35121 -17.15046 -17.04148 -16.85148 -15.97827 -15.78105 -15.69813 -15.41748 -14.90388 -14.69518 -14.35937 -14.31847 -14.22321 -14.04846 -13.75581 -13.49335 -13.30396 -13.15446 -13.04904 -12.90934 -12.84762 -12.51042 -12.24165 -12.09377 -11.90499 -11.72561 -11.64850 -11.41506 -11.04704 -10.97532 -10.78224 -10.32474 -9.54617 -9.27682 -8.01602 -5.31729 0.16765 1.33364 1.36724 1.42838 1.50322 1.70334 2.00015 2.20913 2.47211 3.31013 3.37167 3.49481 3.62372 3.72271 3.85289 4.00032 4.08224 4.18331 4.27329 4.38680 4.47023 4.52121 4.57266 4.61268 4.69610 4.75917 4.82112 4.92985 4.96555 4.97809 5.07117 5.09914 5.13497 5.21813 5.36956 5.43226 5.46927 5.60647 5.82231 6.03839 6.23793 6.36216 6.84319 7.04825 7.11290 7.89897 8.05256 9.20447 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.003889 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.910675 B = 7197.871175 C = 7833.084780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.240 3.760 3 N -0.531 5.531 4 C 0.049 3.951 5 C -0.107 4.107 6 C 0.589 3.411 7 O -0.572 6.572 8 N -0.709 5.709 9 C 0.142 3.858 10 H 0.053 0.947 11 C -0.152 4.152 12 C -0.118 4.118 13 C 0.166 3.834 14 H 0.055 0.945 15 C -0.157 4.157 16 N -0.752 5.752 17 C -0.214 4.214 18 H 0.060 0.940 19 C -0.065 4.065 20 N -0.985 5.985 21 Si 0.948 3.052 22 H -0.278 1.278 23 H -0.303 1.303 24 H -0.261 1.261 25 N -0.438 5.438 26 C 0.039 3.961 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.173 0.827 31 H 0.410 0.590 32 H 0.086 0.914 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.030 0.970 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.362 0.638 41 H 0.255 0.745 42 H 0.106 0.894 43 H 0.140 0.860 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.239 1.065 -6.177 31.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.023 4.023 3 N -0.251 5.251 4 C -0.106 4.106 5 C -0.222 4.222 6 C 0.376 3.624 7 O -0.451 6.451 8 N -0.365 5.365 9 C 0.038 3.962 10 H 0.071 0.929 11 C -0.210 4.210 12 C -0.156 4.156 13 C 0.058 3.942 14 H 0.073 0.927 15 C -0.217 4.217 16 N -0.396 5.396 17 C -0.346 4.346 18 H 0.078 0.922 19 C -0.256 4.256 20 N -0.636 5.636 21 Si 0.778 3.222 22 H -0.205 1.205 23 H -0.231 1.231 24 H -0.186 1.186 25 N -0.121 5.121 26 C -0.102 4.102 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.190 0.810 31 H 0.252 0.748 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.195 0.805 41 H 0.064 0.936 42 H 0.124 0.876 43 H 0.158 0.842 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -30.628 1.876 -6.322 31.330 hybrid contribution 1.087 0.041 0.975 1.461 sum -29.542 1.917 -5.347 30.083 Atomic orbital electron populations 1.20563 0.80603 1.06160 1.05516 1.24385 0.97633 0.80505 0.99764 1.70179 1.01962 1.29913 1.23067 1.22673 0.95259 0.91948 1.00693 1.20896 0.84540 0.95496 1.21295 1.17165 0.86791 0.82469 0.75964 1.90873 1.28177 1.74283 1.51808 1.46322 1.10926 1.05220 1.74071 1.20896 0.86461 0.91783 0.97037 0.92851 1.22080 1.02198 1.00961 0.95773 1.22079 0.98407 0.94481 1.00661 1.20548 0.88509 0.90875 0.94223 0.92714 1.22279 1.00597 0.97877 1.00900 1.42979 1.02150 1.47145 1.47373 1.19028 0.82742 1.21204 1.11585 0.92162 1.25401 0.95236 1.02627 1.02384 1.69868 1.01616 1.50023 1.42109 0.85494 0.77696 0.78269 0.80778 1.20450 1.23052 1.18586 1.45455 1.04174 1.09660 1.52806 1.22845 1.04704 0.76615 1.06001 0.87993 0.88544 0.87136 0.80970 0.74776 0.89536 0.94695 0.92128 0.90976 0.86732 0.95113 0.93098 0.90065 0.80511 0.93634 0.87589 0.84206 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.16 71.23 0.72 0.32 16 2 C 0.24 4.13 7.88 138.20 1.09 5.22 16 3 N -0.53 -13.65 11.20 -187.40 -2.10 -15.75 16 4 C 0.05 1.40 11.66 84.10 0.98 2.38 16 5 C -0.11 -2.80 6.91 40.01 0.28 -2.52 16 6 C 0.59 18.40 7.77 86.47 0.67 19.07 16 7 O -0.57 -24.04 16.56 -4.29 -0.07 -24.11 16 8 N -0.71 -16.95 4.97 -446.43 -2.22 -19.17 16 9 C 0.14 4.22 2.60 44.99 0.12 4.33 16 10 H 0.05 2.19 6.98 -2.38 -0.02 2.17 16 11 C -0.15 -4.36 9.25 71.98 0.67 -3.70 16 12 C -0.12 -2.83 4.48 30.59 0.14 -2.69 16 13 C 0.17 5.55 2.73 44.99 0.12 5.67 16 14 H 0.05 1.94 6.29 -2.39 -0.02 1.92 16 15 C -0.16 -4.57 9.52 71.98 0.68 -3.88 16 16 N -0.75 -34.12 4.17 -322.93 -1.35 -35.47 16 17 C -0.21 -12.16 10.41 84.04 0.87 -11.29 16 18 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 20 N -0.98 -64.88 13.97 21.65 0.30 -64.57 16 21 Si 0.95 48.13 28.00 68.60 1.92 50.05 16 22 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.30 -15.90 7.11 99.48 0.71 -15.19 16 24 H -0.26 -12.22 6.16 99.48 0.61 -11.61 16 25 N -0.44 -7.19 3.17 -524.94 -1.67 -8.85 16 26 C 0.04 0.19 9.57 127.77 1.22 1.41 16 27 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 -0.10 6.94 -2.39 -0.02 -0.12 16 30 H 0.17 5.02 8.06 -2.91 -0.02 5.00 16 31 H 0.41 6.00 4.42 -92.71 -0.41 5.59 16 32 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.06 1.98 6.46 -2.39 -0.02 1.96 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.11 1.69 8.14 -2.38 -0.02 1.68 16 37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.36 16.43 5.57 -92.71 -0.52 15.91 16 41 H 0.25 16.13 8.31 -92.70 -0.77 15.36 16 42 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.14 -0.37 6.81 -2.39 -0.02 -0.38 16 44 H 0.09 0.42 6.00 -2.38 -0.01 0.40 16 Total: -1.00 -86.66 356.19 2.85 -83.82 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -0.01 Total: 23.23 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 8.03 Total: 10.83 kcal Atomic # 7 Polarization: -136.78 SS G_CDS: -7.03 Total: -143.81 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.07 Total: -24.11 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 1.92 Total: 50.05 kcal Total: -86.66 2.85 -83.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135303724.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.322 kcal (2) G-P(sol) polarization free energy of solvation -86.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds