Wall clock time and date at job start Tue Mar 31 2020 03:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46497 * 126.03962 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47267 * 90.00209 * 7 6 2 9 9 O 1.21280 * 119.99663 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00093 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00166 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47281 * 325.00169 * 11 10 8 13 13 C 1.53008 * 109.46822 * 84.99891 * 11 10 8 14 14 C 1.52998 * 109.47587 * 204.99551 * 11 10 8 15 15 C 1.53008 * 109.46586 * 65.00080 * 14 11 10 16 16 H 1.08998 * 109.46863 * 305.00041 * 15 14 11 17 17 C 1.52999 * 109.47014 * 185.00277 * 15 14 11 18 18 N 1.46501 * 109.47097 * 65.00172 * 15 14 11 19 19 C 1.36937 * 119.99821 * 204.99556 * 18 15 14 20 20 H 1.07995 * 119.99910 * 0.02562 * 19 18 15 21 21 C 1.38814 * 119.99578 * 180.02562 * 19 18 15 22 22 N 1.31623 * 119.99969 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00248 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47243 * 90.00023 * 23 21 19 25 25 H 1.48503 * 109.46860 * 210.00313 * 23 21 19 26 26 H 1.48507 * 109.47138 * 329.99751 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 30 30 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 31 31 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 32 32 H 1.08997 * 109.46689 * 210.00046 * 7 6 2 33 33 H 1.09002 * 109.46868 * 329.99889 * 7 6 2 34 34 H 0.96997 * 120.00051 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47386 * 60.00318 * 13 11 10 36 36 H 1.09000 * 109.46826 * 179.97438 * 13 11 10 37 37 H 1.08994 * 109.46990 * 299.99723 * 13 11 10 38 38 H 1.08992 * 109.47664 * 184.99580 * 14 11 10 39 39 H 1.08998 * 109.47448 * 305.00759 * 14 11 10 40 40 H 1.09006 * 109.46759 * 300.00166 * 17 15 14 41 41 H 1.08998 * 109.47269 * 59.99912 * 17 15 14 42 42 H 1.08996 * 109.47444 * 180.02562 * 17 15 14 43 43 H 0.96997 * 120.00122 * 24.99997 * 18 15 14 44 44 H 0.96996 * 120.00322 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4846 -0.0131 8 6 1.6995 -2.9554 -1.4364 9 8 1.9402 -2.2002 -2.3543 10 7 1.2931 -4.2152 -1.6891 11 6 1.1425 -4.6727 -3.0726 12 1 0.7873 -3.8486 -3.6912 13 6 2.4943 -5.1596 -3.5987 14 6 0.1322 -5.8206 -3.1232 15 6 -1.2487 -5.3029 -2.7155 16 1 -1.1832 -4.8242 -1.7385 17 6 -2.2317 -6.4732 -2.6452 18 7 -1.7174 -4.3302 -3.7056 19 6 -2.6281 -3.3726 -3.3468 20 1 -3.0006 -3.3343 -2.3338 21 6 -3.0726 -2.4513 -4.2851 22 7 -3.9477 -1.5306 -3.9401 23 14 -2.4289 -2.5181 -6.0374 24 1 -3.3039 -3.3979 -6.8530 25 1 -2.4250 -1.1503 -6.6157 26 1 -1.0459 -3.0590 -6.0364 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9741 2.1211 0.0007 31 1 4.5084 1.2891 0.0050 32 1 2.5900 -3.1056 0.4972 33 1 0.8955 -2.5605 0.5007 34 1 1.1003 -4.8191 -0.9549 35 1 2.8495 -5.9837 -2.9802 36 1 2.3822 -5.5004 -4.6280 37 1 3.2140 -4.3418 -3.5628 38 1 0.0860 -6.2196 -4.1364 39 1 0.4423 -6.6081 -2.4363 40 1 -2.2970 -6.9520 -3.6223 41 1 -1.8830 -7.1969 -1.9086 42 1 -3.2155 -6.1044 -2.3552 43 1 -1.3826 -4.3644 -4.6153 44 1 -4.2586 -0.8870 -4.5959 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135575366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:54 Heat of formation + Delta-G solvation = 47.922547 kcal Electronic energy + Delta-G solvation = -24554.253447 eV Core-core repulsion = 21122.730926 eV Total energy + Delta-G solvation = -3431.522521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17234 -39.53743 -37.04856 -34.64581 -33.41119 -32.22885 -31.89331 -30.85125 -29.27512 -27.27958 -26.73745 -26.43678 -23.36579 -22.01927 -20.96667 -20.58923 -19.89009 -19.51896 -17.77282 -17.23524 -16.72941 -15.79390 -15.37055 -14.81989 -14.75079 -14.22976 -13.95670 -13.83765 -13.61488 -13.41517 -13.13625 -12.76943 -12.68024 -12.53600 -12.47965 -12.26294 -12.04006 -12.01728 -11.84436 -11.75377 -11.26972 -10.95951 -10.71337 -10.53716 -10.49879 -10.31395 -10.00000 -9.96262 -9.59051 -9.05225 -8.93412 -8.87724 -8.34480 -7.26902 -5.77117 -3.11864 1.92465 2.46943 2.73637 3.00224 3.36464 3.39186 3.42242 3.47740 4.54763 4.60539 4.69964 4.81780 4.93131 4.97026 5.13941 5.20166 5.25965 5.36448 5.48252 5.54440 5.64495 5.71606 5.77052 5.81708 5.83314 5.86999 5.95468 6.10835 6.13498 6.21357 6.26764 6.32945 6.38265 6.47998 6.65040 6.75699 6.78207 6.93738 7.07762 7.61153 7.83687 7.97203 8.35956 8.41698 9.20216 9.93660 10.12653 11.41209 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.005439 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.335877 B = 5146.493641 C = 6248.812843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.105 3.895 3 C -0.281 4.281 4 C 0.048 3.952 5 N -0.297 5.297 6 N -0.356 5.356 7 C 0.114 3.886 8 C 0.497 3.503 9 O -0.514 6.514 10 N -0.714 5.714 11 C 0.145 3.855 12 H 0.100 0.900 13 C -0.162 4.162 14 C -0.135 4.135 15 C 0.177 3.823 16 H 0.053 0.947 17 C -0.166 4.166 18 N -0.746 5.746 19 C -0.239 4.239 20 H 0.088 0.912 21 C 0.007 3.993 22 N -0.933 5.933 23 Si 0.881 3.119 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.277 1.277 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.180 0.820 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.396 0.604 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.038 0.962 42 H 0.057 0.943 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.179 -5.113 9.913 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.022 4.022 3 C -0.310 4.310 4 C -0.138 4.138 5 N -0.117 5.117 6 N -0.138 5.138 7 C -0.012 4.012 8 C 0.281 3.719 9 O -0.388 6.388 10 N -0.367 5.367 11 C 0.041 3.959 12 H 0.118 0.882 13 C -0.220 4.220 14 C -0.173 4.173 15 C 0.068 3.932 16 H 0.071 0.929 17 C -0.226 4.226 18 N -0.389 5.389 19 C -0.369 4.369 20 H 0.105 0.895 21 C -0.189 4.189 22 N -0.581 5.581 23 Si 0.712 3.288 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.163 0.837 31 H 0.197 0.803 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.230 0.770 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.192 0.808 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.875 -5.583 9.348 16.861 hybrid contribution -0.273 0.440 -1.094 1.210 sum 12.602 -5.143 8.254 15.918 Atomic orbital electron populations 1.20520 0.86857 1.05256 1.02973 1.21180 0.94889 0.87041 0.99065 1.21180 0.92303 0.98884 1.18595 1.23748 0.98047 0.92167 0.99862 1.77288 0.96406 1.13176 1.24815 1.47884 1.04047 1.04415 1.57471 1.21435 1.03117 0.80429 0.96236 1.20651 0.77773 0.82429 0.91095 1.90786 1.48218 1.53924 1.45855 1.45870 1.68912 1.12762 1.09124 1.21012 0.94304 0.98198 0.82430 0.88245 1.22190 0.97716 1.01077 1.01054 1.22225 0.95854 0.96652 1.02592 1.20189 0.89779 0.89531 0.93715 0.92865 1.22425 1.01484 0.98585 1.00097 1.42788 1.52187 1.35210 1.08728 1.18975 1.15245 1.05220 0.97488 0.89454 1.24624 0.98977 0.97729 0.97531 1.69685 1.34655 1.19771 1.34011 0.86601 0.78634 0.77005 0.86599 1.21237 1.21807 1.20338 0.90265 0.90385 0.89256 0.83674 0.80274 0.86188 0.86054 0.76994 0.92829 0.91817 0.92458 0.90689 0.91456 0.93624 0.94345 0.92394 0.80757 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.90 36.01 0.36 -0.96 16 2 C 0.11 1.58 6.93 -82.26 -0.57 1.01 16 3 C -0.28 -3.96 10.72 -40.01 -0.43 -4.39 16 4 C 0.05 0.67 12.03 -17.37 -0.21 0.46 16 5 N -0.30 -4.79 12.58 30.62 0.39 -4.40 16 6 N -0.36 -5.44 3.10 -58.31 -0.18 -5.62 16 7 C 0.11 1.39 6.55 -5.19 -0.03 1.35 16 8 C 0.50 7.78 7.86 -10.99 -0.09 7.69 16 9 O -0.51 -10.86 16.09 5.56 0.09 -10.77 16 10 N -0.71 -9.31 4.45 -53.81 -0.24 -9.55 16 11 C 0.14 2.15 2.52 -67.93 -0.17 1.98 16 12 H 0.10 1.97 7.05 -51.93 -0.37 1.60 16 13 C -0.16 -2.09 9.48 37.16 0.35 -1.74 16 14 C -0.13 -1.81 4.29 -26.73 -0.11 -1.93 16 15 C 0.18 3.03 2.84 -67.93 -0.19 2.84 16 16 H 0.05 0.93 7.56 -51.93 -0.39 0.53 16 17 C -0.17 -2.63 9.49 37.16 0.35 -2.28 16 18 N -0.75 -16.70 4.30 -53.42 -0.23 -16.93 16 19 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 20 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 21 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 22 N -0.93 -28.99 13.97 55.49 0.78 -28.22 16 23 Si 0.88 22.51 27.74 -169.99 -4.71 17.79 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 26 H -0.28 -6.76 6.52 56.52 0.37 -6.40 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.20 7.72 -51.93 -0.40 0.80 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.12 1.15 7.66 -51.93 -0.40 0.75 16 34 H 0.40 3.69 8.60 -40.82 -0.35 3.34 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.36 8.16 5.66 -40.82 -0.23 7.93 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -36.51 367.76 -6.80 -43.31 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.23 Total: 11.34 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.00 Total: -2.50 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: 0.51 Total: -64.71 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.51 -6.80 -43.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135575366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.228 kcal (2) G-P(sol) polarization free energy of solvation -36.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds