Wall clock time and date at job start Tue Mar 31 2020 03:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46497 * 126.03962 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47267 * 90.00209 * 7 6 2 9 9 O 1.21280 * 119.99663 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00093 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00166 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47281 * 325.00169 * 11 10 8 13 13 C 1.53008 * 109.46822 * 84.99891 * 11 10 8 14 14 C 1.52998 * 109.47587 * 204.99551 * 11 10 8 15 15 C 1.53008 * 109.46586 * 65.00080 * 14 11 10 16 16 H 1.08998 * 109.46863 * 305.00041 * 15 14 11 17 17 C 1.52999 * 109.47014 * 185.00277 * 15 14 11 18 18 N 1.46501 * 109.47097 * 65.00172 * 15 14 11 19 19 C 1.36937 * 119.99821 * 204.99556 * 18 15 14 20 20 H 1.07995 * 119.99910 * 0.02562 * 19 18 15 21 21 C 1.38814 * 119.99578 * 180.02562 * 19 18 15 22 22 N 1.31623 * 119.99969 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00248 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47243 * 90.00023 * 23 21 19 25 25 H 1.48503 * 109.46860 * 210.00313 * 23 21 19 26 26 H 1.48507 * 109.47138 * 329.99751 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 30 30 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 31 31 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 32 32 H 1.08997 * 109.46689 * 210.00046 * 7 6 2 33 33 H 1.09002 * 109.46868 * 329.99889 * 7 6 2 34 34 H 0.96997 * 120.00051 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47386 * 60.00318 * 13 11 10 36 36 H 1.09000 * 109.46826 * 179.97438 * 13 11 10 37 37 H 1.08994 * 109.46990 * 299.99723 * 13 11 10 38 38 H 1.08992 * 109.47664 * 184.99580 * 14 11 10 39 39 H 1.08998 * 109.47448 * 305.00759 * 14 11 10 40 40 H 1.09006 * 109.46759 * 300.00166 * 17 15 14 41 41 H 1.08998 * 109.47269 * 59.99912 * 17 15 14 42 42 H 1.08996 * 109.47444 * 180.02562 * 17 15 14 43 43 H 0.96997 * 120.00122 * 24.99997 * 18 15 14 44 44 H 0.96996 * 120.00322 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4846 -0.0131 8 6 1.6995 -2.9554 -1.4364 9 8 1.9402 -2.2002 -2.3543 10 7 1.2931 -4.2152 -1.6891 11 6 1.1425 -4.6727 -3.0726 12 1 0.7873 -3.8486 -3.6912 13 6 2.4943 -5.1596 -3.5987 14 6 0.1322 -5.8206 -3.1232 15 6 -1.2487 -5.3029 -2.7155 16 1 -1.1832 -4.8242 -1.7385 17 6 -2.2317 -6.4732 -2.6452 18 7 -1.7174 -4.3302 -3.7056 19 6 -2.6281 -3.3726 -3.3468 20 1 -3.0006 -3.3343 -2.3338 21 6 -3.0726 -2.4513 -4.2851 22 7 -3.9477 -1.5306 -3.9401 23 14 -2.4289 -2.5181 -6.0374 24 1 -3.3039 -3.3979 -6.8530 25 1 -2.4250 -1.1503 -6.6157 26 1 -1.0459 -3.0590 -6.0364 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9741 2.1211 0.0007 31 1 4.5084 1.2891 0.0050 32 1 2.5900 -3.1056 0.4972 33 1 0.8955 -2.5605 0.5007 34 1 1.1003 -4.8191 -0.9549 35 1 2.8495 -5.9837 -2.9802 36 1 2.3822 -5.5004 -4.6280 37 1 3.2140 -4.3418 -3.5628 38 1 0.0860 -6.2196 -4.1364 39 1 0.4423 -6.6081 -2.4363 40 1 -2.2970 -6.9520 -3.6223 41 1 -1.8830 -7.1969 -1.9086 42 1 -3.2155 -6.1044 -2.3552 43 1 -1.3826 -4.3644 -4.6153 44 1 -4.2586 -0.8870 -4.5959 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135575366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:53 Heat of formation + Delta-G solvation = 21.327841 kcal Electronic energy + Delta-G solvation = -24555.406680 eV Core-core repulsion = 21122.730926 eV Total energy + Delta-G solvation = -3432.675754 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.25993 -40.75848 -38.45264 -36.16709 -34.52980 -34.05852 -33.04390 -32.16394 -30.96692 -28.32862 -27.83359 -27.59783 -25.33432 -23.19339 -22.09455 -21.83263 -21.30237 -20.63941 -19.70359 -18.48211 -17.85927 -17.04341 -16.65902 -16.40911 -16.03117 -15.75337 -15.28331 -15.02699 -14.91033 -14.61902 -14.54488 -14.31202 -14.03666 -13.83999 -13.59791 -13.45016 -13.37717 -13.08097 -13.03552 -12.94109 -12.82054 -12.65119 -12.41059 -12.01523 -11.87275 -11.70259 -11.61190 -11.45066 -11.23632 -10.96181 -10.17748 -10.06969 -9.44879 -9.25699 -8.00794 -5.29672 0.80981 1.32056 1.36289 1.40970 1.46182 1.55646 1.93010 2.27937 2.47235 3.32841 3.59425 3.65823 3.66194 3.75053 3.85915 4.06590 4.07629 4.15744 4.30551 4.33048 4.50287 4.63433 4.63955 4.75481 4.78808 4.80068 4.81535 4.90470 4.99193 5.01149 5.08860 5.17561 5.25147 5.30200 5.37097 5.56608 5.62180 5.74924 5.81734 6.01223 6.24087 6.55267 6.74443 7.12081 7.25835 7.91591 8.06054 9.20852 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.005439 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.335877 B = 5146.493641 C = 6248.812843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.085 3.915 3 C -0.291 4.291 4 C 0.045 3.955 5 N -0.328 5.328 6 N -0.365 5.365 7 C 0.113 3.887 8 C 0.492 3.508 9 O -0.578 6.578 10 N -0.698 5.698 11 C 0.144 3.856 12 H 0.045 0.955 13 C -0.152 4.152 14 C -0.120 4.120 15 C 0.167 3.833 16 H 0.050 0.950 17 C -0.158 4.158 18 N -0.751 5.751 19 C -0.209 4.209 20 H 0.061 0.939 21 C -0.063 4.063 22 N -0.982 5.982 23 Si 0.939 3.061 24 H -0.276 1.276 25 H -0.306 1.306 26 H -0.262 1.262 27 H 0.108 0.892 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.164 0.836 31 H 0.212 0.788 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.418 0.582 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.027 0.973 43 H 0.359 0.641 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.737 -7.687 10.883 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.042 4.042 3 C -0.319 4.319 4 C -0.140 4.140 5 N -0.148 5.148 6 N -0.148 5.148 7 C -0.012 4.012 8 C 0.277 3.723 9 O -0.457 6.457 10 N -0.352 5.352 11 C 0.039 3.961 12 H 0.063 0.937 13 C -0.210 4.210 14 C -0.159 4.159 15 C 0.060 3.940 16 H 0.068 0.932 17 C -0.217 4.217 18 N -0.394 5.394 19 C -0.340 4.340 20 H 0.079 0.921 21 C -0.254 4.254 22 N -0.634 5.634 23 Si 0.769 3.231 24 H -0.202 1.202 25 H -0.233 1.233 26 H -0.188 1.188 27 H 0.126 0.874 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.182 0.818 31 H 0.228 0.772 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.256 0.744 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.192 0.808 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.457 -8.271 10.364 19.617 hybrid contribution -0.742 1.183 -1.285 1.898 sum 13.715 -7.087 9.079 17.910 Atomic orbital electron populations 1.20489 0.86272 1.03783 1.04381 1.21538 0.95533 0.87702 0.99456 1.21560 0.92462 0.99740 1.18187 1.24338 0.99179 0.91949 0.98571 1.77214 0.97246 1.14335 1.26032 1.48114 1.03813 1.05355 1.57520 1.21730 1.05503 0.79782 0.94202 1.21310 0.76599 0.82472 0.91941 1.90756 1.51238 1.55722 1.47986 1.45749 1.67539 1.12476 1.09404 1.20885 0.95801 0.96916 0.82496 0.93698 1.22092 0.95683 1.01061 1.02202 1.22144 0.92574 0.96850 1.04287 1.20529 0.92277 0.88950 0.92278 0.93224 1.22289 0.99369 0.98533 1.01531 1.42895 1.51277 1.35357 1.09897 1.18973 1.14107 1.04983 0.95932 0.92086 1.25305 1.00332 0.98351 1.01425 1.69843 1.37167 1.21323 1.35038 0.85634 0.78915 0.76276 0.82301 1.20231 1.23324 1.18755 0.87369 0.92890 0.89590 0.81811 0.77162 0.82917 0.83370 0.74436 0.89603 0.91014 0.95043 0.89944 0.86749 0.93346 0.90133 0.95414 0.80823 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.47 9.90 71.24 0.71 -1.76 16 2 C 0.08 2.53 6.93 41.41 0.29 2.82 16 3 C -0.29 -8.05 10.72 21.99 0.24 -7.81 16 4 C 0.05 1.23 12.03 85.24 1.02 2.26 16 5 N -0.33 -10.39 12.58 -57.03 -0.72 -11.11 16 6 N -0.37 -10.99 3.10 -338.40 -1.05 -12.04 16 7 C 0.11 2.59 6.55 85.63 0.56 3.15 16 8 C 0.49 15.18 7.86 87.66 0.69 15.87 16 9 O -0.58 -25.22 16.09 -3.03 -0.05 -25.27 16 10 N -0.70 -16.87 4.45 -442.54 -1.97 -18.84 16 11 C 0.14 4.01 2.52 44.99 0.11 4.12 16 12 H 0.04 1.79 7.05 -2.39 -0.02 1.77 16 13 C -0.15 -3.57 9.48 71.98 0.68 -2.89 16 14 C -0.12 -2.78 4.29 30.60 0.13 -2.64 16 15 C 0.17 5.32 2.84 44.99 0.13 5.45 16 16 H 0.05 1.63 7.56 -2.39 -0.02 1.61 16 17 C -0.16 -4.51 9.49 71.98 0.68 -3.82 16 18 N -0.75 -33.16 4.30 -322.93 -1.39 -34.55 16 19 C -0.21 -11.53 10.41 84.03 0.87 -10.66 16 20 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 21 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 22 N -0.98 -63.27 13.97 21.65 0.30 -62.96 16 23 Si 0.94 47.50 27.74 68.60 1.90 49.40 16 24 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 26 H -0.26 -12.42 6.52 99.48 0.65 -11.77 16 27 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 1.68 7.72 -2.39 -0.02 1.66 16 29 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.21 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.15 2.52 7.66 -2.39 -0.02 2.50 16 34 H 0.42 6.30 8.60 -92.71 -0.80 5.51 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.36 15.94 5.66 -92.71 -0.52 15.42 16 44 H 0.25 15.79 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -84.71 367.76 3.23 -81.48 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -0.39 Total: 33.06 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 6.58 Total: 0.83 kcal Atomic # 7 Polarization: -134.67 SS G_CDS: -4.82 Total: -139.49 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.90 Total: 49.40 kcal Total: -84.71 3.23 -81.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135575366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.804 kcal (2) G-P(sol) polarization free energy of solvation -84.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds