Wall clock time and date at job start Tue Mar 31 2020 03:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35320 * 126.12696 * 2 1 4 4 C 1.39863 * 107.92293 * 179.97438 * 3 2 1 5 5 N 1.30847 * 108.19914 * 359.73859 * 4 3 2 6 6 N 1.34939 * 126.12684 * 179.97438 * 2 1 3 7 7 C 1.46497 * 126.03895 * 0.02562 * 6 2 1 8 8 C 1.50697 * 109.47134 * 89.99897 * 7 6 2 9 9 O 1.21278 * 120.00283 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00002 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99713 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.47271 * 35.00090 * 11 10 8 13 13 C 1.52993 * 109.47002 * 274.99674 * 11 10 8 14 14 C 1.52998 * 109.46555 * 155.00057 * 11 10 8 15 15 C 1.52998 * 109.47384 * 294.99651 * 14 11 10 16 16 H 1.09003 * 109.47082 * 305.00221 * 15 14 11 17 17 C 1.52995 * 109.47443 * 185.00170 * 15 14 11 18 18 N 1.46498 * 109.47009 * 65.00045 * 15 14 11 19 19 C 1.36935 * 120.00239 * 204.99963 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72270 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72118 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72153 * 23 21 19 27 27 H 1.09007 * 109.47175 * 270.03119 * 1 2 3 28 28 H 1.09001 * 109.47074 * 30.02785 * 1 2 3 29 29 H 1.09001 * 109.47064 * 150.02953 * 1 2 3 30 30 H 1.08000 * 126.03655 * 359.97359 * 3 2 1 31 31 H 1.07998 * 125.90215 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47087 * 329.99599 * 7 6 2 33 33 H 1.09002 * 109.46950 * 209.99858 * 7 6 2 34 34 H 0.96995 * 119.99521 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.47223 * 60.00644 * 13 11 10 36 36 H 1.09004 * 109.47405 * 180.02562 * 13 11 10 37 37 H 1.09006 * 109.47749 * 300.00516 * 13 11 10 38 38 H 1.08997 * 109.46877 * 175.00041 * 14 11 10 39 39 H 1.08999 * 109.47306 * 55.00192 * 14 11 10 40 40 H 1.08996 * 109.47329 * 300.00343 * 17 15 14 41 41 H 1.09003 * 109.46933 * 60.00266 * 17 15 14 42 42 H 1.09004 * 109.47411 * 179.97438 * 17 15 14 43 43 H 0.97004 * 119.99747 * 25.00702 * 18 15 14 44 44 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6561 0.0006 5 7 3.6333 -0.6524 0.0066 6 7 2.3026 -1.0899 0.0005 7 6 1.8539 -2.4845 0.0006 8 6 1.7005 -2.9629 -1.4202 9 8 1.9418 -2.2128 -2.3421 10 7 1.2943 -4.2243 -1.6664 11 6 1.1447 -4.6892 -3.0476 12 1 1.9119 -4.2298 -3.6707 13 6 -0.2388 -4.2977 -3.5704 14 6 1.2949 -6.2111 -3.0924 15 6 2.7197 -6.5951 -2.6882 16 1 3.4320 -6.0691 -3.3240 17 6 2.9073 -8.1046 -2.8526 18 7 2.9472 -6.2242 -1.2893 19 6 4.2190 -5.9823 -0.8432 20 1 5.0544 -6.0645 -1.5227 21 6 4.4346 -5.6314 0.4824 22 7 3.4159 -5.5260 1.3092 23 14 6.1695 -5.3007 1.0909 24 1 6.7670 -6.5640 1.5934 25 1 6.9937 -4.7733 -0.0262 26 1 6.1270 -4.3021 2.1891 27 1 -0.3634 0.0006 1.0277 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8903 -0.5134 30 1 1.9740 2.1211 -0.0004 31 1 4.5083 1.2892 0.0004 32 1 0.8952 -2.5577 0.5141 33 1 2.5897 -3.1028 0.5148 34 1 1.1010 -4.8241 -0.9290 35 1 -0.3459 -3.2134 -3.5384 36 1 -0.3504 -4.6440 -4.5979 37 1 -1.0062 -4.7571 -2.9472 38 1 1.0960 -6.5662 -4.1036 39 1 0.5859 -6.6667 -2.4013 40 1 2.1950 -8.6306 -2.2170 41 1 2.7381 -8.3805 -3.8935 42 1 3.9225 -8.3781 -2.5651 43 1 2.1968 -6.1502 -0.6791 44 1 2.5150 -5.6973 0.9933 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135575367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:56 Heat of formation + Delta-G solvation = 52.147608 kcal Electronic energy + Delta-G solvation = -25130.739044 eV Core-core repulsion = 21699.399735 eV Total energy + Delta-G solvation = -3431.339309 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.93099 -39.33394 -36.97667 -34.44614 -33.13613 -32.52572 -31.77025 -30.65053 -28.37469 -26.95976 -26.67871 -26.40159 -23.54894 -21.87992 -20.74378 -20.43996 -20.05214 -19.18211 -17.47579 -16.92873 -16.51832 -15.73495 -15.08366 -14.88843 -14.54435 -14.11580 -13.90050 -13.58555 -13.53053 -13.30688 -13.12752 -13.03862 -12.73675 -12.50979 -12.27591 -12.12069 -11.88240 -11.81742 -11.66777 -11.63922 -11.11890 -10.76232 -10.52856 -10.47502 -10.18504 -10.16291 -9.99955 -9.68888 -9.20960 -9.01017 -8.81147 -8.54918 -8.14117 -7.06437 -6.14785 -3.14772 2.19099 2.76162 3.06120 3.21735 3.53538 3.60697 3.71687 3.73566 4.65568 4.84392 4.88352 4.92797 5.13527 5.19948 5.30306 5.36505 5.42041 5.50415 5.51734 5.56544 5.73275 5.76992 5.82759 5.86922 5.87636 5.94563 6.01572 6.10048 6.12093 6.22602 6.29551 6.40240 6.42675 6.45296 6.75126 6.91682 6.98347 7.01840 7.33047 7.78898 7.92956 8.13896 8.65293 8.67804 9.13590 9.98841 10.14417 11.31590 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.006987 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.478322 B = 4006.237397 C = 5821.538999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.085 3.915 3 C -0.281 4.281 4 C 0.036 3.964 5 N -0.273 5.273 6 N -0.341 5.341 7 C 0.105 3.895 8 C 0.513 3.487 9 O -0.541 6.541 10 N -0.697 5.697 11 C 0.152 3.848 12 H 0.083 0.917 13 C -0.161 4.161 14 C -0.134 4.134 15 C 0.174 3.826 16 H 0.049 0.951 17 C -0.163 4.163 18 N -0.728 5.728 19 C -0.314 4.314 20 H 0.062 0.938 21 C -0.041 4.041 22 N -0.945 5.945 23 Si 1.074 2.926 24 H -0.298 1.298 25 H -0.296 1.296 26 H -0.287 1.287 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.141 0.859 31 H 0.179 0.821 32 H 0.110 0.890 33 H 0.149 0.851 34 H 0.400 0.600 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.036 0.964 42 H 0.053 0.947 43 H 0.360 0.640 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.846 5.664 -4.455 12.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C -0.311 4.311 4 C -0.150 4.150 5 N -0.093 5.093 6 N -0.123 5.123 7 C -0.020 4.020 8 C 0.298 3.702 9 O -0.419 6.419 10 N -0.350 5.350 11 C 0.047 3.953 12 H 0.101 0.899 13 C -0.220 4.220 14 C -0.173 4.173 15 C 0.065 3.935 16 H 0.067 0.933 17 C -0.223 4.223 18 N -0.372 5.372 19 C -0.445 4.445 20 H 0.080 0.920 21 C -0.238 4.238 22 N -0.593 5.593 23 Si 0.906 3.094 24 H -0.226 1.226 25 H -0.222 1.222 26 H -0.213 1.213 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.159 0.841 31 H 0.196 0.804 32 H 0.128 0.872 33 H 0.167 0.833 34 H 0.237 0.763 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.194 0.806 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.871 5.419 -3.934 10.334 hybrid contribution -1.508 -0.196 -0.873 1.753 sum -9.379 5.223 -4.807 11.762 Atomic orbital electron populations 1.20402 0.87960 1.03614 1.02827 1.21015 0.94437 0.87549 1.01260 1.21077 0.92443 0.98390 1.19165 1.23775 0.97889 0.92405 1.00943 1.77555 0.96419 1.12729 1.22581 1.47970 1.03862 1.04615 1.55873 1.21638 1.03847 0.80161 0.96338 1.20521 0.76391 0.82424 0.90895 1.90682 1.50100 1.55280 1.45798 1.45886 1.67982 1.12514 1.08596 1.20815 0.96894 0.94302 0.83316 0.89880 1.22198 0.97106 1.01857 1.00815 1.22223 0.99136 0.94051 1.01844 1.20223 0.92943 0.92764 0.87610 0.93305 1.22399 1.01849 0.99252 0.98780 1.42475 1.05883 1.83640 1.05207 1.20058 0.85100 1.42875 0.96456 0.91952 1.25554 1.05740 1.00308 0.92151 1.70990 0.98405 1.53616 1.36260 0.83276 0.74275 0.76197 0.75660 1.22626 1.22249 1.21267 0.90376 0.89860 0.91521 0.84072 0.80425 0.87187 0.83295 0.76344 0.92467 0.91972 0.92751 0.90612 0.91796 0.93720 0.94454 0.92773 0.80590 0.94195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.90 36.01 0.36 -0.68 16 2 C 0.09 1.38 6.93 -82.27 -0.57 0.81 16 3 C -0.28 -4.35 10.72 -40.01 -0.43 -4.77 16 4 C 0.04 0.62 12.03 -17.36 -0.21 0.41 16 5 N -0.27 -5.79 12.58 30.62 0.39 -5.40 16 6 N -0.34 -6.61 3.10 -58.32 -0.18 -6.79 16 7 C 0.11 1.96 6.54 -5.20 -0.03 1.93 16 8 C 0.51 10.00 7.86 -10.98 -0.09 9.92 16 9 O -0.54 -12.27 16.09 5.56 0.09 -12.18 16 10 N -0.70 -11.89 3.80 -53.81 -0.20 -12.09 16 11 C 0.15 2.37 2.57 -67.93 -0.17 2.20 16 12 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 13 C -0.16 -2.06 9.48 37.15 0.35 -1.71 16 14 C -0.13 -1.94 4.43 -26.73 -0.12 -2.06 16 15 C 0.17 3.23 2.89 -67.93 -0.20 3.03 16 16 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 17 C -0.16 -2.78 9.49 37.16 0.35 -2.43 16 18 N -0.73 -16.11 3.84 -53.43 -0.21 -16.31 16 19 C -0.31 -8.26 9.93 -15.06 -0.15 -8.41 16 20 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 21 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 22 N -0.95 -25.96 13.40 55.49 0.74 -25.21 16 23 Si 1.07 26.21 29.92 -169.99 -5.09 21.13 16 24 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.78 7.72 -51.93 -0.40 0.38 16 30 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.18 2.37 8.06 -52.49 -0.42 1.94 16 32 H 0.11 1.60 7.66 -51.93 -0.40 1.20 16 33 H 0.15 3.28 7.85 -51.93 -0.41 2.87 16 34 H 0.40 6.63 6.51 -40.82 -0.27 6.36 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.36 7.83 4.54 -40.82 -0.19 7.65 16 44 H 0.25 6.43 6.77 -40.82 -0.28 6.15 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -33.10 364.39 -6.99 -40.10 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -7.03 Total: 14.28 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.00 Total: -3.00 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: 0.54 Total: -65.81 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -5.09 Total: 21.13 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.10 -6.99 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135575367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.246 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds