Wall clock time and date at job start Tue Mar 31 2020 03:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47234 * 2 1 4 4 C 1.35028 * 124.88717 * 125.28269 * 3 2 1 5 5 C 1.35367 * 107.23190 * 179.75920 * 4 3 2 6 6 C 1.41502 * 105.49776 * 0.35653 * 5 4 3 7 7 C 1.47712 * 126.51634 * 179.90354 * 6 5 4 8 8 O 1.21576 * 119.99783 * 4.83513 * 7 6 5 9 9 N 1.34771 * 120.00130 * 184.84533 * 7 6 5 10 10 C 1.46498 * 120.00177 * 185.39407 * 9 7 6 11 11 H 1.09004 * 109.47328 * 354.36730 * 10 9 7 12 12 C 1.53002 * 109.47495 * 114.36538 * 10 9 7 13 13 C 1.52997 * 109.47290 * 234.36978 * 10 9 7 14 14 C 1.53003 * 109.47481 * 66.12733 * 13 10 9 15 15 H 1.09007 * 109.46689 * 53.22668 * 14 13 10 16 16 C 1.53000 * 109.47377 * 173.22188 * 14 13 10 17 17 N 1.46493 * 109.46991 * 293.22893 * 14 13 10 18 18 C 1.36941 * 120.00060 * 159.40850 * 17 14 13 19 19 H 1.08003 * 120.00037 * 4.34420 * 18 17 14 20 20 C 1.38809 * 120.00411 * 184.35616 * 18 17 14 21 21 N 1.31628 * 119.99761 * 4.75326 * 20 18 17 22 22 Si 1.86801 * 120.00417 * 184.75001 * 20 18 17 23 23 H 1.48506 * 109.46825 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46969 * 119.99717 * 22 20 18 25 25 H 1.48496 * 109.47349 * 239.99941 * 22 20 18 26 26 N 1.28472 * 124.88136 * 305.27149 * 3 2 1 27 27 H 1.08999 * 109.47490 * 184.99943 * 1 2 3 28 28 H 1.08995 * 109.47336 * 305.00222 * 1 2 3 29 29 H 1.09003 * 109.47083 * 65.00014 * 1 2 3 30 30 H 1.09002 * 109.47271 * 239.99679 * 2 1 3 31 31 H 1.09003 * 109.46926 * 119.99966 * 2 1 3 32 32 H 1.08006 * 126.38348 * 0.02735 * 4 3 2 33 33 H 1.07993 * 127.25404 * 180.23551 * 5 4 3 34 34 H 0.97000 * 119.99999 * 5.38981 * 9 7 6 35 35 H 1.09004 * 109.46768 * 60.00574 * 12 10 9 36 36 H 1.09002 * 109.47519 * 179.97438 * 12 10 9 37 37 H 1.08994 * 109.47052 * 300.00595 * 12 10 9 38 38 H 1.09007 * 109.47021 * 306.12820 * 13 10 9 39 39 H 1.09003 * 109.47757 * 186.12953 * 13 10 9 40 40 H 1.08998 * 109.46921 * 60.00701 * 16 14 13 41 41 H 1.08995 * 109.46755 * 180.02562 * 16 14 13 42 42 H 1.08999 * 109.47355 * 300.00723 * 16 14 13 43 43 H 0.96999 * 120.00130 * 339.39969 * 17 14 13 44 44 H 0.97001 * 120.00031 * 185.01279 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8789 1.8960 0.9042 5 6 3.0895 3.1897 0.5659 6 6 2.2977 3.4132 -0.5853 7 6 2.1802 4.6780 -1.3393 8 8 2.8685 5.6330 -1.0356 9 7 1.3098 4.7734 -2.3638 10 6 1.2763 5.9853 -3.1862 11 1 1.9486 6.7311 -2.7618 12 6 1.7226 5.6480 -4.6102 13 6 -0.1486 6.5418 -3.2166 14 6 -0.5390 7.0210 -1.8170 15 1 0.2165 7.7138 -1.4462 16 6 -1.8937 7.7295 -1.8798 17 7 -0.6310 5.8703 -0.9150 18 6 -0.5467 6.0536 0.4395 19 1 -0.4830 7.0521 0.8464 20 6 -0.5429 4.9563 1.2896 21 7 -0.5258 3.7380 0.7914 22 14 -0.5619 5.2083 3.1404 23 1 -0.5803 6.6624 3.4417 24 1 -1.7730 4.5691 3.7145 25 1 0.6517 4.5941 3.7361 26 7 1.6895 2.2767 -0.8604 27 1 -0.3634 -1.0237 0.0896 28 1 -0.3634 0.5894 0.8417 29 1 -0.3633 0.4343 -0.9314 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3207 1.3720 1.7389 33 1 3.7261 3.9019 1.0697 34 1 0.7055 4.0395 -2.5568 35 1 1.0502 4.9023 -5.0347 36 1 1.6972 6.5496 -5.2222 37 1 2.7376 5.2515 -4.5885 38 1 -0.8371 5.7604 -3.5383 39 1 -0.1972 7.3784 -3.9137 40 1 -2.6491 7.0367 -2.2505 41 1 -2.1715 8.0711 -0.8828 42 1 -1.8252 8.5855 -2.5510 43 1 -0.7518 4.9786 -1.2771 44 1 -0.5966 2.9716 1.3818 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135604928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:57 Heat of formation + Delta-G solvation = 53.491462 kcal Electronic energy + Delta-G solvation = -25640.816490 eV Core-core repulsion = 22209.535455 eV Total energy + Delta-G solvation = -3431.281035 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.73712 -38.74697 -36.34329 -34.07555 -33.94416 -32.00843 -30.63996 -29.70007 -29.12104 -28.24865 -26.17148 -24.30632 -23.41798 -21.99013 -20.64584 -20.32621 -19.85767 -19.01435 -17.14375 -16.91549 -15.95333 -15.42874 -15.21128 -14.62193 -14.11428 -13.92037 -13.64024 -13.57987 -13.15574 -12.99329 -12.72138 -12.46916 -12.38180 -12.06093 -11.91981 -11.76442 -11.74222 -11.53918 -11.46741 -11.06192 -10.87499 -10.67758 -10.54162 -10.27778 -10.07706 -9.93710 -9.70544 -9.46646 -9.09139 -8.71468 -8.33392 -8.18635 -8.02958 -6.65726 -5.52479 -2.78406 2.61632 2.98869 3.15944 3.52400 3.59870 3.61531 4.06346 4.62379 4.77989 4.80326 5.20379 5.23893 5.32973 5.37081 5.56972 5.60156 5.68534 5.76785 5.79646 5.81727 6.00098 6.03098 6.08491 6.15284 6.19311 6.30002 6.39494 6.47665 6.49756 6.54114 6.55633 6.62159 6.71013 6.82893 7.04755 7.25126 7.27279 7.45008 7.55184 7.93274 8.44335 8.62351 8.84270 9.30024 9.75497 10.32382 10.69904 11.65520 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.008069 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.361095 B = 3469.172084 C = 4726.268569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 N -0.282 5.282 4 C -0.036 4.036 5 C -0.179 4.179 6 C 0.028 3.972 7 C 0.637 3.363 8 O -0.554 6.554 9 N -0.697 5.697 10 C 0.142 3.858 11 H 0.095 0.905 12 C -0.160 4.160 13 C -0.132 4.132 14 C 0.171 3.829 15 H 0.042 0.958 16 C -0.162 4.162 17 N -0.713 5.713 18 C -0.224 4.224 19 H 0.061 0.939 20 C -0.004 4.004 21 N -0.907 5.907 22 Si 0.888 3.112 23 H -0.285 1.285 24 H -0.299 1.299 25 H -0.295 1.295 26 N -0.232 5.232 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.164 0.836 33 H 0.146 0.854 34 H 0.401 0.599 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.032 0.968 43 H 0.381 0.619 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 -6.690 -7.275 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.005 3.995 3 N -0.071 5.071 4 C -0.178 4.178 5 C -0.207 4.207 6 C -0.133 4.133 7 C 0.423 3.577 8 O -0.430 6.430 9 N -0.347 5.347 10 C 0.036 3.964 11 H 0.113 0.887 12 C -0.218 4.218 13 C -0.171 4.171 14 C 0.061 3.939 15 H 0.060 0.940 16 C -0.222 4.222 17 N -0.356 5.356 18 C -0.356 4.356 19 H 0.079 0.921 20 C -0.200 4.200 21 N -0.555 5.555 22 Si 0.721 3.279 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.223 1.223 26 N -0.067 5.067 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.236 0.764 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.215 0.785 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.727 -6.569 -7.651 10.751 hybrid contribution -0.141 -0.191 1.912 1.927 sum 3.586 -6.761 -5.739 9.566 Atomic orbital electron populations 1.21995 0.92947 1.01731 1.05163 1.21747 0.96913 0.77718 1.03073 1.45236 1.32337 1.09821 1.19751 1.22475 1.00282 0.95975 0.99021 1.21515 1.04878 0.95342 0.98954 1.21428 1.00094 0.92783 0.99023 1.16552 0.78515 0.84718 0.77877 1.90665 1.47237 1.37846 1.67256 1.45468 1.38796 1.18764 1.31652 1.20870 0.97457 0.88418 0.89621 0.88676 1.22189 1.01306 1.01505 0.96848 1.22219 0.95907 1.00365 0.98640 1.20207 0.93962 0.90895 0.88803 0.93962 1.22422 1.00406 0.98912 1.00464 1.42367 1.87020 1.03977 1.02193 1.19116 1.41394 0.92193 0.82895 0.92128 1.24485 1.03578 0.95522 0.96397 1.69730 1.57433 0.96061 1.32309 0.86390 0.76583 0.76932 0.88017 1.21100 1.22723 1.22295 1.73308 1.18710 0.98272 1.16384 0.91798 0.90933 0.90759 0.90118 0.89162 0.81819 0.83671 0.76396 0.92760 0.92059 0.92753 0.92116 0.91511 0.93843 0.93125 0.94863 0.78468 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.00 37.16 0.37 -1.76 16 2 C 0.13 1.54 7.12 -4.04 -0.03 1.52 16 3 N -0.28 -4.80 3.41 -61.33 -0.21 -5.01 16 4 C -0.04 -0.62 11.40 -17.17 -0.20 -0.81 16 5 C -0.18 -3.69 10.81 -39.36 -0.43 -4.12 16 6 C 0.03 0.61 6.65 -82.76 -0.55 0.06 16 7 C 0.64 14.51 7.40 -12.39 -0.09 14.42 16 8 O -0.55 -14.14 16.27 5.30 0.09 -14.06 16 9 N -0.70 -13.54 2.96 -54.79 -0.16 -13.70 16 10 C 0.14 2.41 2.93 -67.93 -0.20 2.21 16 11 H 0.10 1.85 6.90 -51.93 -0.36 1.49 16 12 C -0.16 -2.13 9.52 37.16 0.35 -1.78 16 13 C -0.13 -2.17 4.50 -26.73 -0.12 -2.29 16 14 C 0.17 3.50 2.87 -67.93 -0.20 3.31 16 15 H 0.04 0.95 8.10 -51.92 -0.42 0.53 16 16 C -0.16 -3.02 9.43 37.16 0.35 -2.67 16 17 N -0.71 -17.32 3.71 -53.42 -0.20 -17.51 16 18 C -0.22 -6.23 9.88 -15.06 -0.15 -6.38 16 19 H 0.06 1.75 7.83 -52.48 -0.41 1.34 16 20 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 21 N -0.91 -24.70 12.60 55.49 0.70 -24.00 16 22 Si 0.89 23.03 29.56 -169.99 -5.02 18.01 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 25 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 26 N -0.23 -4.60 11.43 33.42 0.38 -4.22 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 32 H 0.16 2.16 8.06 -52.48 -0.42 1.74 16 33 H 0.15 2.95 8.06 -52.49 -0.42 2.53 16 34 H 0.40 7.69 8.17 -40.82 -0.33 7.36 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.38 9.55 6.44 -40.82 -0.26 9.29 16 44 H 0.24 6.66 8.32 -40.82 -0.34 6.32 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -32.11 366.90 -7.13 -39.24 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -7.26 Total: 14.22 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.98 Total: 1.51 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: 0.51 Total: -64.45 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.11 -7.13 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135604928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.735 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds