Wall clock time and date at job start Tue Mar 31 2020 03:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47234 * 2 1 4 4 C 1.35028 * 124.88717 * 125.28269 * 3 2 1 5 5 C 1.35367 * 107.23190 * 179.75920 * 4 3 2 6 6 C 1.41502 * 105.49776 * 0.35653 * 5 4 3 7 7 C 1.47712 * 126.51634 * 179.90354 * 6 5 4 8 8 O 1.21576 * 119.99783 * 4.83513 * 7 6 5 9 9 N 1.34771 * 120.00130 * 184.84533 * 7 6 5 10 10 C 1.46498 * 120.00177 * 185.39407 * 9 7 6 11 11 H 1.09004 * 109.47328 * 354.36730 * 10 9 7 12 12 C 1.53002 * 109.47495 * 114.36538 * 10 9 7 13 13 C 1.52997 * 109.47290 * 234.36978 * 10 9 7 14 14 C 1.53003 * 109.47481 * 66.12733 * 13 10 9 15 15 H 1.09007 * 109.46689 * 53.22668 * 14 13 10 16 16 C 1.53000 * 109.47377 * 173.22188 * 14 13 10 17 17 N 1.46493 * 109.46991 * 293.22893 * 14 13 10 18 18 C 1.36941 * 120.00060 * 159.40850 * 17 14 13 19 19 H 1.08003 * 120.00037 * 4.34420 * 18 17 14 20 20 C 1.38809 * 120.00411 * 184.35616 * 18 17 14 21 21 N 1.31628 * 119.99761 * 4.75326 * 20 18 17 22 22 Si 1.86801 * 120.00417 * 184.75001 * 20 18 17 23 23 H 1.48506 * 109.46825 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46969 * 119.99717 * 22 20 18 25 25 H 1.48496 * 109.47349 * 239.99941 * 22 20 18 26 26 N 1.28472 * 124.88136 * 305.27149 * 3 2 1 27 27 H 1.08999 * 109.47490 * 184.99943 * 1 2 3 28 28 H 1.08995 * 109.47336 * 305.00222 * 1 2 3 29 29 H 1.09003 * 109.47083 * 65.00014 * 1 2 3 30 30 H 1.09002 * 109.47271 * 239.99679 * 2 1 3 31 31 H 1.09003 * 109.46926 * 119.99966 * 2 1 3 32 32 H 1.08006 * 126.38348 * 0.02735 * 4 3 2 33 33 H 1.07993 * 127.25404 * 180.23551 * 5 4 3 34 34 H 0.97000 * 119.99999 * 5.38981 * 9 7 6 35 35 H 1.09004 * 109.46768 * 60.00574 * 12 10 9 36 36 H 1.09002 * 109.47519 * 179.97438 * 12 10 9 37 37 H 1.08994 * 109.47052 * 300.00595 * 12 10 9 38 38 H 1.09007 * 109.47021 * 306.12820 * 13 10 9 39 39 H 1.09003 * 109.47757 * 186.12953 * 13 10 9 40 40 H 1.08998 * 109.46921 * 60.00701 * 16 14 13 41 41 H 1.08995 * 109.46755 * 180.02562 * 16 14 13 42 42 H 1.08999 * 109.47355 * 300.00723 * 16 14 13 43 43 H 0.96999 * 120.00130 * 339.39969 * 17 14 13 44 44 H 0.97001 * 120.00031 * 185.01279 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8789 1.8960 0.9042 5 6 3.0895 3.1897 0.5659 6 6 2.2977 3.4132 -0.5853 7 6 2.1802 4.6780 -1.3393 8 8 2.8685 5.6330 -1.0356 9 7 1.3098 4.7734 -2.3638 10 6 1.2763 5.9853 -3.1862 11 1 1.9486 6.7311 -2.7618 12 6 1.7226 5.6480 -4.6102 13 6 -0.1486 6.5418 -3.2166 14 6 -0.5390 7.0210 -1.8170 15 1 0.2165 7.7138 -1.4462 16 6 -1.8937 7.7295 -1.8798 17 7 -0.6310 5.8703 -0.9150 18 6 -0.5467 6.0536 0.4395 19 1 -0.4830 7.0521 0.8464 20 6 -0.5429 4.9563 1.2896 21 7 -0.5258 3.7380 0.7914 22 14 -0.5619 5.2083 3.1404 23 1 -0.5803 6.6624 3.4417 24 1 -1.7730 4.5691 3.7145 25 1 0.6517 4.5941 3.7361 26 7 1.6895 2.2767 -0.8604 27 1 -0.3634 -1.0237 0.0896 28 1 -0.3634 0.5894 0.8417 29 1 -0.3633 0.4343 -0.9314 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3207 1.3720 1.7389 33 1 3.7261 3.9019 1.0697 34 1 0.7055 4.0395 -2.5568 35 1 1.0502 4.9023 -5.0347 36 1 1.6972 6.5496 -5.2222 37 1 2.7376 5.2515 -4.5885 38 1 -0.8371 5.7604 -3.5383 39 1 -0.1972 7.3784 -3.9137 40 1 -2.6491 7.0367 -2.2505 41 1 -2.1715 8.0711 -0.8828 42 1 -1.8252 8.5855 -2.5510 43 1 -0.7518 4.9786 -1.2771 44 1 -0.5966 2.9716 1.3818 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135604928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:56 Heat of formation + Delta-G solvation = 32.636499 kcal Electronic energy + Delta-G solvation = -25641.720829 eV Core-core repulsion = 22209.535455 eV Total energy + Delta-G solvation = -3432.185374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.16485 -40.37137 -38.01997 -35.76532 -35.19665 -33.89902 -32.18797 -31.16556 -30.54688 -29.95839 -27.52523 -25.65814 -25.43800 -23.31674 -22.05742 -21.76453 -21.48089 -20.57176 -19.02073 -18.49654 -17.42273 -16.91512 -16.62452 -16.54213 -15.54677 -15.49438 -15.38244 -15.14110 -14.76162 -14.41491 -14.22167 -13.97034 -13.85263 -13.54266 -13.27394 -13.16220 -13.04726 -12.89464 -12.81673 -12.74094 -12.56154 -12.24070 -12.13623 -12.08687 -11.68778 -11.52796 -11.41806 -11.35961 -10.82820 -10.76943 -9.83660 -9.72711 -9.53084 -8.64392 -7.67053 -4.90523 1.08419 1.40417 1.45503 1.49540 1.50102 1.92596 2.54554 2.65940 3.00625 3.60362 3.67496 3.89296 4.11093 4.15884 4.18899 4.23798 4.28118 4.44736 4.46814 4.57390 4.61637 4.76667 4.86985 4.88546 4.90745 4.97314 4.98028 5.05574 5.07085 5.12827 5.19985 5.21981 5.40058 5.43451 5.48100 5.66933 5.69396 5.72429 5.93347 6.25625 6.48915 6.83747 7.34522 7.58916 7.64488 8.32705 8.62738 9.47872 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.008069 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.361095 B = 3469.172084 C = 4726.268569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.116 3.884 3 N -0.276 5.276 4 C -0.016 4.016 5 C -0.222 4.222 6 C -0.005 4.005 7 C 0.627 3.373 8 O -0.598 6.598 9 N -0.686 5.686 10 C 0.136 3.864 11 H 0.066 0.934 12 C -0.148 4.148 13 C -0.119 4.119 14 C 0.163 3.837 15 H 0.013 0.987 16 C -0.150 4.150 17 N -0.715 5.715 18 C -0.235 4.235 19 H 0.040 0.960 20 C -0.038 4.038 21 N -0.901 5.901 22 Si 0.928 3.072 23 H -0.291 1.291 24 H -0.297 1.297 25 H -0.302 1.302 26 N -0.238 5.238 27 H 0.101 0.899 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.209 0.791 33 H 0.133 0.867 34 H 0.403 0.597 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.024 0.976 42 H 0.067 0.933 43 H 0.376 0.624 44 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -8.523 -8.554 12.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.003 4.003 3 N -0.065 5.065 4 C -0.159 4.159 5 C -0.251 4.251 6 C -0.165 4.165 7 C 0.414 3.586 8 O -0.479 6.479 9 N -0.335 5.335 10 C 0.031 3.969 11 H 0.084 0.916 12 C -0.206 4.206 13 C -0.158 4.158 14 C 0.054 3.946 15 H 0.031 0.969 16 C -0.210 4.210 17 N -0.357 5.357 18 C -0.367 4.367 19 H 0.058 0.942 20 C -0.234 4.234 21 N -0.549 5.549 22 Si 0.762 3.238 23 H -0.217 1.217 24 H -0.224 1.224 25 H -0.230 1.230 26 N -0.074 5.074 27 H 0.120 0.880 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.147 0.853 32 H 0.226 0.774 33 H 0.151 0.849 34 H 0.238 0.762 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.122 0.878 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.210 0.790 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.108 -8.402 -8.980 12.685 hybrid contribution 0.027 0.332 2.317 2.341 sum 3.135 -8.071 -6.664 10.926 Atomic orbital electron populations 1.21919 0.93787 1.03178 1.02223 1.22271 0.96142 0.75454 1.06391 1.45782 1.31225 1.10926 1.18585 1.23019 0.98880 0.94836 0.99174 1.21695 1.06301 0.97228 0.99872 1.21463 1.01693 0.93256 1.00063 1.16885 0.78561 0.84804 0.78367 1.90618 1.49105 1.39393 1.68735 1.45485 1.37634 1.19436 1.30915 1.21069 0.97520 0.86985 0.91290 0.91620 1.22077 1.01046 1.03245 0.94204 1.22138 0.95274 1.01872 0.96495 1.20420 0.94301 0.89486 0.90392 0.96887 1.22249 0.98880 0.99980 0.99891 1.42346 1.87071 1.04843 1.01438 1.19094 1.41600 0.91262 0.84787 0.94196 1.24887 1.04273 0.95853 0.98385 1.69802 1.57220 0.95690 1.32235 0.85761 0.76066 0.76273 0.85723 1.21682 1.22441 1.22988 1.73237 1.18636 0.98211 1.17318 0.88000 0.94387 0.93188 0.87426 0.85259 0.77400 0.84875 0.76199 0.91118 0.89328 0.93488 0.90998 0.87785 0.93351 0.95679 0.91381 0.78973 0.95224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 10.00 71.98 0.72 -3.02 16 2 C 0.12 2.44 7.12 86.38 0.61 3.06 16 3 N -0.28 -8.92 3.41 -347.95 -1.19 -10.11 16 4 C -0.02 -0.54 11.40 83.54 0.95 0.41 16 5 C -0.22 -9.42 10.81 22.41 0.24 -9.18 16 6 C -0.01 -0.23 6.65 42.46 0.28 0.05 16 7 C 0.63 29.75 7.40 86.75 0.64 30.39 16 8 O -0.60 -32.43 16.27 -3.95 -0.06 -32.49 16 9 N -0.69 -27.13 2.96 -445.53 -1.32 -28.45 16 10 C 0.14 4.57 2.93 44.99 0.13 4.70 16 11 H 0.07 2.63 6.90 -2.38 -0.02 2.61 16 12 C -0.15 -3.60 9.52 71.98 0.69 -2.92 16 13 C -0.12 -3.69 4.50 30.59 0.14 -3.56 16 14 C 0.16 6.66 2.87 44.99 0.13 6.79 16 15 H 0.01 0.61 8.10 -2.38 -0.02 0.59 16 16 C -0.15 -5.43 9.43 71.98 0.68 -4.75 16 17 N -0.71 -35.37 3.71 -322.94 -1.20 -36.57 16 18 C -0.23 -13.43 9.88 84.03 0.83 -12.60 16 19 H 0.04 2.41 7.83 -2.91 -0.02 2.39 16 20 C -0.04 -2.16 5.50 84.86 0.47 -1.69 16 21 N -0.90 -49.62 12.60 21.65 0.27 -49.34 16 22 Si 0.93 48.15 29.56 68.60 2.03 50.18 16 23 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 24 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 25 H -0.30 -15.89 7.11 99.48 0.71 -15.19 16 26 N -0.24 -9.41 11.43 -48.18 -0.55 -9.96 16 27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.13 1.78 8.04 -2.39 -0.02 1.76 16 32 H 0.21 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.13 5.75 8.06 -2.91 -0.02 5.72 16 34 H 0.40 15.53 8.17 -92.71 -0.76 14.78 16 35 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.38 19.08 6.44 -92.71 -0.60 18.49 16 44 H 0.24 13.13 8.32 -92.71 -0.77 12.35 16 Total: -1.00 -74.33 366.90 4.13 -70.19 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -0.36 Total: 38.87 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.51 Total: 7.68 kcal Atomic # 7 Polarization: -130.45 SS G_CDS: -3.98 Total: -134.43 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.06 Total: -32.49 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -74.33 4.13 -70.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135604928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.830 kcal (2) G-P(sol) polarization free energy of solvation -74.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds