Wall clock time and date at job start Tue Mar 31 2020 03:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47081 * 2 1 4 4 C 1.35860 * 126.18500 * 270.04168 * 3 2 1 5 5 N 1.30149 * 109.03477 * 179.97438 * 4 3 2 6 6 C 1.35738 * 108.98791 * 359.97438 * 5 4 3 7 7 C 1.47326 * 126.22360 * 180.26285 * 6 5 4 8 8 O 1.21623 * 120.00342 * 179.69301 * 7 6 5 9 9 N 1.34779 * 119.99773 * 359.68783 * 7 6 5 10 10 C 1.46499 * 120.00216 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46609 * 35.00535 * 10 9 7 12 12 C 1.52999 * 109.47172 * 275.00302 * 10 9 7 13 13 C 1.52998 * 109.47249 * 155.00204 * 10 9 7 14 14 C 1.53001 * 109.46990 * 295.00342 * 13 10 9 15 15 H 1.09004 * 109.47497 * 55.00281 * 14 13 10 16 16 C 1.53010 * 109.47127 * 174.99772 * 14 13 10 17 17 N 1.46501 * 109.47284 * 294.99414 * 14 13 10 18 18 C 1.36934 * 119.99650 * 154.99750 * 17 14 13 19 19 H 1.07997 * 120.00289 * 0.02562 * 18 17 14 20 20 C 1.38816 * 119.99378 * 180.02562 * 18 17 14 21 21 N 1.31616 * 120.00579 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99600 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47175 * 60.00134 * 22 20 18 24 24 H 1.48498 * 109.47188 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47399 * 300.00153 * 22 20 18 26 26 C 1.35915 * 126.18079 * 90.00342 * 3 2 1 27 27 H 1.09001 * 109.47615 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46935 * 299.99844 * 1 2 3 29 29 H 1.09001 * 109.47155 * 59.99676 * 1 2 3 30 30 H 1.09004 * 109.46935 * 240.00156 * 2 1 3 31 31 H 1.09001 * 109.47155 * 120.00324 * 2 1 3 32 32 H 1.08001 * 125.47862 * 359.96587 * 4 3 2 33 33 H 0.97007 * 119.99970 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.47130 * 300.00022 * 12 10 9 35 35 H 1.08996 * 109.46888 * 59.99857 * 12 10 9 36 36 H 1.08997 * 109.46731 * 179.97438 * 12 10 9 37 37 H 1.08995 * 109.46979 * 54.99982 * 13 10 9 38 38 H 1.08991 * 109.47378 * 175.00359 * 13 10 9 39 39 H 1.09004 * 109.46517 * 59.99909 * 16 14 13 40 40 H 1.08997 * 109.47059 * 180.02562 * 16 14 13 41 41 H 1.08994 * 109.46645 * 300.00419 * 16 14 13 42 42 H 0.96994 * 120.00087 * 335.01045 * 17 14 13 43 43 H 0.96994 * 120.00009 * 180.02562 * 21 20 18 44 44 H 1.07995 * 126.61223 * 0.05434 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2849 2.1377 -1.0965 5 7 2.6992 3.3102 -0.7128 6 6 2.7137 3.3513 0.6439 7 6 3.1136 4.4994 1.4760 8 8 3.0779 4.4135 2.6886 9 7 3.5191 5.6451 0.8933 10 6 3.9162 6.7871 1.7205 11 1 4.4102 6.4274 2.6232 12 6 2.6747 7.5942 2.1056 13 6 4.8791 7.6774 0.9325 14 6 6.1728 6.9091 0.6551 15 1 5.9377 5.9712 0.1519 16 6 7.0852 7.7522 -0.2381 17 7 6.8542 6.6268 1.9210 18 6 7.7105 5.5625 2.0150 19 1 7.8839 4.9313 1.1560 20 6 8.3557 5.2947 3.2146 21 7 8.1440 6.0635 4.2617 22 14 9.5244 3.8432 3.3428 23 1 10.6329 4.0127 2.3693 24 1 10.0793 3.7744 4.7185 25 1 8.7898 2.5880 3.0426 26 6 2.2858 2.1376 1.0970 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1714 1.8174 -2.1217 33 1 3.5473 5.7138 -0.0740 34 1 2.1808 7.9537 1.2030 35 1 1.9888 6.9599 2.6670 36 1 2.9702 8.4435 2.7215 37 1 4.4175 7.9647 -0.0122 38 1 5.1050 8.5716 1.5133 39 1 7.3203 8.6902 0.2651 40 1 8.0066 7.2047 -0.4361 41 1 6.5782 7.9623 -1.1799 42 1 6.6986 7.1938 2.6924 43 1 8.5951 5.8766 5.0998 44 1 2.1801 1.8361 2.1287 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135942565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:21 Heat of formation + Delta-G solvation = 23.028686 kcal Electronic energy + Delta-G solvation = -24003.542344 eV Core-core repulsion = 20570.940344 eV Total energy + Delta-G solvation = -3432.602000 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.13888 -39.03988 -36.60843 -35.19011 -34.25214 -32.01016 -30.86113 -30.33456 -29.30876 -28.45437 -26.17400 -24.45917 -23.52738 -23.15921 -21.12820 -20.67258 -19.81942 -19.49892 -17.90723 -17.06136 -16.09498 -15.81539 -15.50226 -14.87452 -14.61857 -14.43246 -14.00583 -13.87082 -13.74357 -13.59263 -13.32118 -12.98446 -12.78679 -12.53259 -12.50050 -12.00573 -11.83869 -11.81163 -11.59946 -11.44871 -10.90887 -10.72250 -10.49282 -10.31119 -10.21954 -10.12189 -9.83333 -9.75938 -9.53284 -9.48357 -8.75492 -8.66690 -8.38097 -6.79153 -5.61332 -2.88280 1.70390 2.48889 2.51796 3.53106 3.57017 3.58166 3.72627 3.95894 4.23063 4.46381 4.50157 4.61407 4.72619 4.78212 5.10878 5.17926 5.23594 5.33358 5.53394 5.57057 5.59697 5.66254 5.75530 5.86194 5.98314 6.05404 6.10594 6.17119 6.30158 6.43780 6.44759 6.51264 6.59309 6.72891 6.88724 6.95809 7.01178 7.13436 7.22763 7.74186 7.83989 8.15848 8.57534 8.80535 9.68495 10.27067 10.61720 11.61679 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012625 B = 0.004560 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.322118 B = 6138.695735 C = 7296.908927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 N -0.462 5.462 4 C 0.182 3.818 5 N -0.464 5.464 6 C -0.051 4.051 7 C 0.602 3.398 8 O -0.541 6.541 9 N -0.701 5.701 10 C 0.143 3.857 11 H 0.105 0.895 12 C -0.160 4.160 13 C -0.130 4.130 14 C 0.171 3.829 15 H 0.048 0.952 16 C -0.164 4.164 17 N -0.720 5.720 18 C -0.230 4.230 19 H 0.066 0.934 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.288 1.288 26 C 0.029 3.971 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.208 0.792 33 H 0.401 0.599 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.034 0.966 42 H 0.382 0.618 43 H 0.254 0.746 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.363 -8.486 -11.948 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.145 5.145 4 C -0.101 4.101 5 N -0.183 5.183 6 C -0.180 4.180 7 C 0.387 3.613 8 O -0.418 6.418 9 N -0.351 5.351 10 C 0.039 3.961 11 H 0.123 0.877 12 C -0.218 4.218 13 C -0.168 4.168 14 C 0.061 3.939 15 H 0.066 0.934 16 C -0.225 4.225 17 N -0.361 5.361 18 C -0.361 4.361 19 H 0.084 0.916 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.215 1.215 26 C -0.109 4.109 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.224 0.776 33 H 0.236 0.764 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.216 0.784 43 H 0.063 0.937 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -17.081 -8.142 -11.586 22.188 hybrid contribution 0.506 -1.381 0.286 1.498 sum -16.576 -9.523 -11.300 22.207 Atomic orbital electron populations 1.22179 0.93937 1.03263 1.03449 1.21919 0.95697 0.79595 1.05068 1.45634 1.49043 1.12990 1.06876 1.25094 1.03867 0.87659 0.93499 1.70558 1.17652 1.19381 1.10664 1.20728 1.11088 0.95783 0.90354 1.16825 0.76862 0.81260 0.86344 1.90807 1.54762 1.82852 1.13342 1.45730 1.66292 1.12695 1.10365 1.21035 0.93869 0.85285 0.95893 0.87696 1.22180 0.98514 1.00163 1.00984 1.22150 0.96331 0.98735 0.99631 1.20235 0.89516 0.95416 0.88757 0.93435 1.22447 1.00943 1.00686 0.98375 1.42383 1.51828 1.33834 1.08096 1.19133 1.17057 1.04061 0.95893 0.91625 1.24667 1.01010 0.99156 0.96043 1.69635 1.46973 1.40096 1.01488 0.86336 0.80971 0.82818 0.76494 1.21488 1.21776 1.21529 1.22715 1.03265 0.91820 0.93078 0.90436 0.91642 0.91693 0.88540 0.88716 0.77565 0.76399 0.93179 0.92583 0.91810 0.92051 0.90707 0.93605 0.93008 0.94695 0.78374 0.93658 0.79684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 2 C 0.10 0.54 6.85 -4.05 -0.03 0.51 16 3 N -0.46 -4.56 2.74 -118.21 -0.32 -4.89 16 4 C 0.18 1.94 12.56 -89.92 -1.13 0.81 16 5 N -0.46 -6.78 10.99 -11.03 -0.12 -6.91 16 6 C -0.05 -0.83 6.98 -83.09 -0.58 -1.41 16 7 C 0.60 11.68 7.78 -12.56 -0.10 11.58 16 8 O -0.54 -12.30 16.54 5.26 0.09 -12.21 16 9 N -0.70 -12.36 4.44 -54.91 -0.24 -12.60 16 10 C 0.14 2.59 2.52 -67.93 -0.17 2.42 16 11 H 0.11 2.40 7.05 -51.93 -0.37 2.04 16 12 C -0.16 -2.44 9.48 37.16 0.35 -2.09 16 13 C -0.13 -2.19 4.29 -26.73 -0.11 -2.31 16 14 C 0.17 3.51 2.84 -67.92 -0.19 3.32 16 15 H 0.05 1.03 7.56 -51.93 -0.39 0.64 16 16 C -0.16 -3.09 9.49 37.16 0.35 -2.74 16 17 N -0.72 -18.61 4.49 -53.42 -0.24 -18.85 16 18 C -0.23 -6.68 9.93 -15.06 -0.15 -6.83 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -29.33 13.06 55.49 0.72 -28.60 16 22 Si 0.90 23.61 29.55 -169.99 -5.02 18.59 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 C 0.03 0.39 11.29 -16.39 -0.19 0.20 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.21 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.40 6.41 8.32 -40.82 -0.34 6.07 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.38 10.51 7.80 -40.82 -0.32 10.19 16 43 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.19 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -36.34 371.70 -8.50 -44.84 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -7.30 Total: 12.45 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.66 Total: 2.58 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -0.20 Total: -71.85 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.02 Total: 18.59 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.34 -8.50 -44.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135942565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.873 kcal (2) G-P(sol) polarization free energy of solvation -36.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds