Wall clock time and date at job start Tue Mar 31 2020 03:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47081 * 2 1 4 4 C 1.35860 * 126.18500 * 270.04168 * 3 2 1 5 5 N 1.30149 * 109.03477 * 179.97438 * 4 3 2 6 6 C 1.35738 * 108.98791 * 359.97438 * 5 4 3 7 7 C 1.47326 * 126.22360 * 180.26285 * 6 5 4 8 8 O 1.21623 * 120.00342 * 179.69301 * 7 6 5 9 9 N 1.34779 * 119.99773 * 359.68783 * 7 6 5 10 10 C 1.46499 * 120.00216 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46609 * 35.00535 * 10 9 7 12 12 C 1.52999 * 109.47172 * 275.00302 * 10 9 7 13 13 C 1.52998 * 109.47249 * 155.00204 * 10 9 7 14 14 C 1.53001 * 109.46990 * 295.00342 * 13 10 9 15 15 H 1.09004 * 109.47497 * 55.00281 * 14 13 10 16 16 C 1.53010 * 109.47127 * 174.99772 * 14 13 10 17 17 N 1.46501 * 109.47284 * 294.99414 * 14 13 10 18 18 C 1.36934 * 119.99650 * 154.99750 * 17 14 13 19 19 H 1.07997 * 120.00289 * 0.02562 * 18 17 14 20 20 C 1.38816 * 119.99378 * 180.02562 * 18 17 14 21 21 N 1.31616 * 120.00579 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99600 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47175 * 60.00134 * 22 20 18 24 24 H 1.48498 * 109.47188 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47399 * 300.00153 * 22 20 18 26 26 C 1.35915 * 126.18079 * 90.00342 * 3 2 1 27 27 H 1.09001 * 109.47615 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46935 * 299.99844 * 1 2 3 29 29 H 1.09001 * 109.47155 * 59.99676 * 1 2 3 30 30 H 1.09004 * 109.46935 * 240.00156 * 2 1 3 31 31 H 1.09001 * 109.47155 * 120.00324 * 2 1 3 32 32 H 1.08001 * 125.47862 * 359.96587 * 4 3 2 33 33 H 0.97007 * 119.99970 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.47130 * 300.00022 * 12 10 9 35 35 H 1.08996 * 109.46888 * 59.99857 * 12 10 9 36 36 H 1.08997 * 109.46731 * 179.97438 * 12 10 9 37 37 H 1.08995 * 109.46979 * 54.99982 * 13 10 9 38 38 H 1.08991 * 109.47378 * 175.00359 * 13 10 9 39 39 H 1.09004 * 109.46517 * 59.99909 * 16 14 13 40 40 H 1.08997 * 109.47059 * 180.02562 * 16 14 13 41 41 H 1.08994 * 109.46645 * 300.00419 * 16 14 13 42 42 H 0.96994 * 120.00087 * 335.01045 * 17 14 13 43 43 H 0.96994 * 120.00009 * 180.02562 * 21 20 18 44 44 H 1.07995 * 126.61223 * 0.05434 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2849 2.1377 -1.0965 5 7 2.6992 3.3102 -0.7128 6 6 2.7137 3.3513 0.6439 7 6 3.1136 4.4994 1.4760 8 8 3.0779 4.4135 2.6886 9 7 3.5191 5.6451 0.8933 10 6 3.9162 6.7871 1.7205 11 1 4.4102 6.4274 2.6232 12 6 2.6747 7.5942 2.1056 13 6 4.8791 7.6774 0.9325 14 6 6.1728 6.9091 0.6551 15 1 5.9377 5.9712 0.1519 16 6 7.0852 7.7522 -0.2381 17 7 6.8542 6.6268 1.9210 18 6 7.7105 5.5625 2.0150 19 1 7.8839 4.9313 1.1560 20 6 8.3557 5.2947 3.2146 21 7 8.1440 6.0635 4.2617 22 14 9.5244 3.8432 3.3428 23 1 10.6329 4.0127 2.3693 24 1 10.0793 3.7744 4.7185 25 1 8.7898 2.5880 3.0426 26 6 2.2858 2.1376 1.0970 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1714 1.8174 -2.1217 33 1 3.5473 5.7138 -0.0740 34 1 2.1808 7.9537 1.2030 35 1 1.9888 6.9599 2.6670 36 1 2.9702 8.4435 2.7215 37 1 4.4175 7.9647 -0.0122 38 1 5.1050 8.5716 1.5133 39 1 7.3203 8.6902 0.2651 40 1 8.0066 7.2047 -0.4361 41 1 6.5782 7.9623 -1.1799 42 1 6.6986 7.1938 2.6924 43 1 8.5951 5.8766 5.0998 44 1 2.1801 1.8361 2.1287 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135942565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:20 Heat of formation + Delta-G solvation = -1.559751 kcal Electronic energy + Delta-G solvation = -24004.608579 eV Core-core repulsion = 20570.940344 eV Total energy + Delta-G solvation = -3433.668235 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.08007 -40.50162 -38.24724 -36.02239 -35.89403 -33.98133 -32.17793 -31.21016 -30.52890 -30.19800 -27.59359 -25.69923 -25.23634 -24.15397 -22.27611 -21.77574 -21.22219 -21.06396 -19.31108 -18.77890 -17.31145 -17.10308 -16.69975 -16.40621 -15.75727 -15.63794 -15.58396 -15.27575 -14.92631 -14.70111 -14.60596 -14.46029 -14.24551 -13.61387 -13.53603 -13.33661 -13.13812 -12.97712 -12.91075 -12.78269 -12.65692 -12.24981 -12.22060 -12.21211 -11.82013 -11.55540 -11.41868 -11.30920 -10.98312 -10.88995 -10.70984 -10.00684 -9.56943 -8.93878 -7.90657 -5.16218 0.59654 1.41203 1.45406 1.50831 1.50914 1.71662 2.42384 2.56966 2.63283 3.42811 3.47183 3.77613 3.84513 3.90733 4.02075 4.11168 4.12975 4.23307 4.41685 4.42376 4.48127 4.55719 4.69887 4.73134 4.79499 4.84705 4.84895 4.94610 5.04365 5.10439 5.12070 5.23393 5.24356 5.34958 5.43019 5.45915 5.52024 5.63222 5.70479 6.16574 6.32372 6.60707 6.93295 7.37738 7.38757 8.17544 8.38976 9.33029 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012625 B = 0.004560 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.322118 B = 6138.695735 C = 7296.908927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 N -0.452 5.452 4 C 0.200 3.800 5 N -0.496 5.496 6 C -0.091 4.091 7 C 0.591 3.409 8 O -0.591 6.591 9 N -0.693 5.693 10 C 0.145 3.855 11 H 0.048 0.952 12 C -0.149 4.149 13 C -0.117 4.117 14 C 0.165 3.835 15 H 0.034 0.966 16 C -0.154 4.154 17 N -0.730 5.730 18 C -0.229 4.229 19 H 0.065 0.935 20 C -0.077 4.077 21 N -0.968 5.968 22 Si 0.964 3.036 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.287 1.287 26 C 0.031 3.969 27 H 0.099 0.901 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.101 0.899 32 H 0.255 0.745 33 H 0.411 0.589 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.371 0.629 43 H 0.248 0.752 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.404 -9.602 -14.973 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.028 4.028 3 N -0.134 5.134 4 C -0.085 4.085 5 N -0.215 5.215 6 C -0.219 4.219 7 C 0.379 3.621 8 O -0.472 6.472 9 N -0.342 5.342 10 C 0.040 3.960 11 H 0.067 0.933 12 C -0.207 4.207 13 C -0.155 4.155 14 C 0.057 3.943 15 H 0.052 0.948 16 C -0.214 4.214 17 N -0.371 5.371 18 C -0.361 4.361 19 H 0.083 0.917 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.794 3.206 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.214 1.214 26 C -0.109 4.109 27 H 0.118 0.882 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.146 0.854 31 H 0.119 0.881 32 H 0.271 0.729 33 H 0.247 0.753 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.203 0.797 43 H 0.057 0.943 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -18.140 -9.263 -14.701 25.120 hybrid contribution 0.731 -1.118 1.102 1.732 sum -17.409 -10.381 -13.600 24.409 Atomic orbital electron populations 1.22153 0.93124 1.04464 1.02580 1.22341 0.96283 0.77148 1.07014 1.45909 1.47695 1.14242 1.05509 1.26000 1.00893 0.86381 0.95203 1.70469 1.19638 1.21844 1.09550 1.20461 1.14222 0.95862 0.91384 1.17386 0.76194 0.82353 0.86202 1.90759 1.57130 1.83836 1.15486 1.45677 1.65518 1.12350 1.10694 1.20897 0.95136 0.85799 0.94144 0.93326 1.22071 0.96829 0.99626 1.02214 1.22064 0.94131 0.97853 1.01463 1.20480 0.91206 0.95862 0.86801 0.94751 1.22284 0.99751 0.99686 0.99677 1.42559 1.51840 1.32967 1.09704 1.19455 1.16598 1.04418 0.95660 0.91708 1.25440 1.03382 1.02087 0.95985 1.69795 1.48456 1.41961 1.01767 0.85346 0.79219 0.79630 0.76439 1.20097 1.21959 1.21420 1.22795 1.02306 0.91537 0.94277 0.88190 0.93445 0.91610 0.85396 0.88058 0.72945 0.75302 0.90270 0.94377 0.90696 0.87943 0.90080 0.93559 0.95181 0.90669 0.79739 0.94296 0.79436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 71.98 0.74 -0.32 16 2 C 0.09 0.71 6.85 86.38 0.59 1.30 16 3 N -0.45 -7.97 2.74 -527.91 -1.45 -9.42 16 4 C 0.20 3.69 12.56 180.10 2.26 5.96 16 5 N -0.50 -14.00 10.99 -188.82 -2.08 -16.08 16 6 C -0.09 -3.06 6.98 40.51 0.28 -2.78 16 7 C 0.59 24.09 7.78 86.63 0.67 24.77 16 8 O -0.59 -28.86 16.54 -4.10 -0.07 -28.93 16 9 N -0.69 -24.96 4.44 -445.89 -1.98 -26.94 16 10 C 0.14 5.33 2.52 44.99 0.11 5.45 16 11 H 0.05 2.37 7.05 -2.38 -0.02 2.35 16 12 C -0.15 -4.50 9.48 71.98 0.68 -3.82 16 13 C -0.12 -3.79 4.29 30.59 0.13 -3.66 16 14 C 0.16 6.71 2.84 44.99 0.13 6.84 16 15 H 0.03 1.49 7.56 -2.38 -0.02 1.48 16 16 C -0.15 -5.53 9.49 71.99 0.68 -4.85 16 17 N -0.73 -38.77 4.49 -322.92 -1.45 -40.23 16 18 C -0.23 -13.61 9.93 84.03 0.83 -12.78 16 19 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 20 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 21 N -0.97 -62.91 13.06 21.65 0.28 -62.63 16 22 Si 0.96 49.55 29.55 68.60 2.03 51.58 16 23 H -0.27 -13.41 7.11 99.48 0.71 -12.71 16 24 H -0.29 -15.04 7.11 99.48 0.71 -14.34 16 25 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 26 C 0.03 0.84 11.29 83.64 0.94 1.79 16 27 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.13 0.26 8.14 -2.38 -0.02 0.25 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.25 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.41 12.99 8.32 -92.70 -0.77 12.22 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 39 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.37 21.19 7.80 -92.71 -0.72 20.47 16 43 H 0.25 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.19 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -84.20 371.70 3.32 -80.88 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: -0.50 Total: 38.12 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 8.53 Total: 13.63 kcal Atomic # 7 Polarization: -148.61 SS G_CDS: -6.67 Total: -155.29 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.07 Total: -28.93 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.03 Total: 51.58 kcal Total: -84.20 3.32 -80.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135942565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.325 kcal (2) G-P(sol) polarization free energy of solvation -84.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds