Wall clock time and date at job start Tue Mar 31 2020 03:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46641 * 2 1 4 4 C 1.52997 * 109.47279 * 119.99851 * 2 1 3 5 5 C 1.53003 * 109.47231 * 185.00167 * 4 2 1 6 6 H 1.09000 * 109.46903 * 305.00540 * 5 4 2 7 7 C 1.52997 * 109.47312 * 185.00170 * 5 4 2 8 8 N 1.46503 * 109.47029 * 64.99894 * 5 4 2 9 9 C 1.34769 * 120.00207 * 205.00259 * 8 5 4 10 10 O 1.21283 * 120.00415 * 359.97438 * 9 8 5 11 11 C 1.50698 * 120.00252 * 180.02562 * 9 8 5 12 12 C 1.50697 * 109.47436 * 180.02562 * 11 9 8 13 13 C 1.34669 * 126.59585 * 85.16051 * 12 11 9 14 14 N 1.34133 * 108.02235 * 180.28483 * 13 12 11 15 15 C 1.30502 * 109.25197 * 359.73051 * 14 13 12 16 16 N 1.35041 * 108.70384 * 0.02562 * 15 14 13 17 17 C 1.46499 * 126.39764 * 180.02562 * 16 15 14 18 18 N 1.46495 * 109.47123 * 240.00309 * 2 1 3 19 19 C 1.36943 * 120.00251 * 85.00070 * 18 2 1 20 20 H 1.07995 * 120.00014 * 359.97438 * 19 18 2 21 21 C 1.38812 * 120.00116 * 180.02562 * 19 18 2 22 22 N 1.31617 * 119.99976 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00019 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46989 * 90.00440 * 23 21 19 25 25 H 1.48498 * 109.47250 * 210.00372 * 23 21 19 26 26 H 1.48505 * 109.47069 * 330.00669 * 23 21 19 27 27 H 1.09003 * 109.47396 * 60.00461 * 1 2 3 28 28 H 1.08999 * 109.46641 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47545 * 299.99603 * 1 2 3 30 30 H 1.08998 * 109.47334 * 65.00398 * 4 2 1 31 31 H 1.09002 * 109.47124 * 305.00395 * 4 2 1 32 32 H 1.09001 * 109.47149 * 59.99814 * 7 5 4 33 33 H 1.09002 * 109.47103 * 180.02562 * 7 5 4 34 34 H 1.09008 * 109.46839 * 300.00094 * 7 5 4 35 35 H 0.97003 * 119.99968 * 25.00248 * 8 5 4 36 36 H 1.08994 * 109.47477 * 59.99406 * 11 9 8 37 37 H 1.09007 * 109.47124 * 299.99518 * 11 9 8 38 38 H 1.07993 * 125.98713 * 0.05405 * 13 12 11 39 39 H 1.08005 * 125.64657 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.47391 * 90.01916 * 17 16 15 41 41 H 1.09001 * 109.46813 * 330.01972 * 17 16 15 42 42 H 1.09004 * 109.47041 * 210.02099 * 17 16 15 43 43 H 0.97000 * 119.99961 * 264.99003 * 18 2 1 44 44 H 0.97001 * 119.99565 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9921 0.3868 7 6 4.0853 -1.4382 2.4924 8 7 3.9479 0.7895 1.4924 9 6 5.1611 1.2138 1.0866 10 8 5.9360 0.4342 0.5739 11 6 5.5553 2.6565 1.2710 12 6 6.9487 2.8687 0.7376 13 6 7.2886 3.1287 -0.5393 14 7 8.6237 3.2434 -0.5982 15 6 9.1236 3.0700 0.5948 16 7 8.1120 2.8367 1.4584 17 6 8.2366 2.5906 2.8972 18 7 2.0183 -0.6905 -1.1962 19 6 2.1491 -0.0073 -2.3758 20 1 1.8919 1.0404 -2.4244 21 6 2.6113 -0.6618 -3.5093 22 7 2.7366 -0.0053 -4.6432 23 14 3.0556 -2.4743 -3.4255 24 1 1.8581 -3.2927 -3.7444 25 1 4.1306 -2.7664 -4.4074 26 1 3.5310 -2.8047 -2.0580 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.7518 -1.7715 1.2056 31 1 1.6054 -0.2617 2.1370 32 1 3.8002 -2.4818 2.3594 33 1 5.1716 -1.3608 2.5386 34 1 3.6546 -1.0592 3.4193 35 1 3.3284 1.4130 1.9028 36 1 5.5296 2.9076 2.3313 37 1 4.8581 3.2958 0.7293 38 1 6.6061 3.2241 -1.3708 39 1 10.1726 3.1070 0.8492 40 1 8.1877 3.5382 3.4335 41 1 9.1915 2.1063 3.1015 42 1 7.4234 1.9440 3.2270 43 1 2.2491 -1.6316 -1.1526 44 1 3.0599 -0.4626 -5.4352 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135944520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:58 Heat of formation + Delta-G solvation = 4.308640 kcal Electronic energy + Delta-G solvation = -24360.208662 eV Core-core repulsion = 20926.794899 eV Total energy + Delta-G solvation = -3433.413762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.04012 -40.72388 -38.40735 -36.09636 -34.96562 -34.09537 -33.38674 -31.86389 -30.90895 -28.03082 -27.73911 -27.55907 -25.33751 -23.01333 -22.39334 -21.84617 -21.23801 -20.72338 -19.69862 -18.19264 -17.98590 -17.12986 -16.65839 -16.45182 -16.29233 -15.84944 -15.29586 -15.18131 -14.88824 -14.63227 -14.51488 -14.30641 -14.03991 -13.96504 -13.68052 -13.46426 -13.37319 -13.26312 -12.97627 -12.94788 -12.79383 -12.61464 -12.39044 -11.99117 -11.85711 -11.67130 -11.42531 -10.97679 -10.95534 -10.89271 -10.44425 -9.95017 -9.32685 -9.25683 -8.01223 -5.30501 1.00972 1.31067 1.36751 1.41771 1.73888 1.94066 2.15059 2.47528 2.47774 3.32531 3.57825 3.67434 3.81858 3.88451 3.94675 4.05545 4.11785 4.17780 4.37793 4.41216 4.45624 4.54418 4.58767 4.68042 4.70280 4.78786 4.83873 4.85572 4.93366 5.02654 5.10030 5.22871 5.34414 5.35577 5.41122 5.63068 5.67423 5.76075 5.81621 6.24015 6.34271 6.69930 7.12188 7.12470 7.42722 7.91807 8.05899 9.21043 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.004952 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.433253 B = 5653.258769 C = 6734.136655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.047 0.953 4 C -0.120 4.120 5 C 0.141 3.859 6 H 0.041 0.959 7 C -0.149 4.149 8 N -0.704 5.704 9 C 0.508 3.492 10 O -0.584 6.584 11 C -0.055 4.055 12 C -0.002 4.002 13 C -0.053 4.053 14 N -0.543 5.543 15 C 0.181 3.819 16 N -0.455 5.455 17 C 0.065 3.935 18 N -0.750 5.750 19 C -0.210 4.210 20 H 0.057 0.943 21 C -0.068 4.068 22 N -0.987 5.987 23 Si 0.945 3.055 24 H -0.273 1.273 25 H -0.306 1.306 26 H -0.259 1.259 27 H 0.024 0.976 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.086 0.914 35 H 0.416 0.584 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.147 0.853 39 H 0.243 0.757 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.360 0.640 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 4.690 26.957 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.158 4.158 5 C 0.036 3.964 6 H 0.060 0.940 7 C -0.208 4.208 8 N -0.356 5.356 9 C 0.294 3.706 10 O -0.464 6.464 11 C -0.096 4.096 12 C -0.118 4.118 13 C -0.200 4.200 14 N -0.262 5.262 15 C -0.102 4.102 16 N -0.137 5.137 17 C -0.076 4.076 18 N -0.393 5.393 19 C -0.341 4.341 20 H 0.075 0.925 21 C -0.258 4.258 22 N -0.639 5.639 23 Si 0.774 3.226 24 H -0.199 1.199 25 H -0.234 1.234 26 H -0.184 1.184 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.253 0.747 36 H 0.161 0.839 37 H 0.148 0.852 38 H 0.164 0.836 39 H 0.259 0.741 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.193 0.807 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.509 4.440 25.953 26.900 hybrid contribution -0.245 -1.022 -0.574 1.197 sum 5.264 3.418 25.379 26.144 Atomic orbital electron populations 1.22290 0.97278 1.01281 1.00862 1.20540 0.92806 0.95581 0.85225 0.93496 1.22135 0.92697 1.02512 0.98486 1.20865 0.95623 0.81605 0.98260 0.94021 1.22069 1.00272 1.00136 0.98293 1.45810 1.16220 1.11396 1.62212 1.20990 0.81914 0.90685 0.76979 1.90738 1.52964 1.58177 1.44489 1.20107 0.90723 0.93025 1.05740 1.20626 0.89243 1.09481 0.92445 1.22070 0.92505 1.09154 0.96320 1.70158 1.09440 1.22314 1.24240 1.25599 0.96597 1.03827 0.84139 1.45441 1.05678 1.51926 1.10655 1.22379 1.05762 1.04372 0.75067 1.42861 1.79746 1.09405 1.07299 1.18975 1.33720 0.94229 0.87214 0.92494 1.25386 1.03048 1.01849 0.95563 1.69868 1.55490 1.37374 1.01120 0.85549 0.77518 0.82079 0.77496 1.19926 1.23398 1.18372 0.95636 0.93237 0.90070 0.90040 0.86756 0.91337 0.94535 0.89533 0.74708 0.83919 0.85204 0.83571 0.74135 0.87691 0.87475 0.89698 0.80731 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 9.49 71.98 0.68 -3.99 16 2 C 0.17 5.50 2.84 44.99 0.13 5.63 16 3 H 0.05 1.63 7.56 -2.39 -0.02 1.61 16 4 C -0.12 -2.80 4.29 30.59 0.13 -2.67 16 5 C 0.14 3.88 2.52 44.99 0.11 3.99 16 6 H 0.04 1.66 7.06 -2.39 -0.02 1.65 16 7 C -0.15 -3.21 9.48 71.98 0.68 -2.53 16 8 N -0.70 -16.58 4.45 -442.54 -1.97 -18.54 16 9 C 0.51 14.95 7.79 87.66 0.68 15.64 16 10 O -0.58 -24.54 15.70 -3.04 -0.05 -24.58 16 11 C -0.06 -1.15 5.88 29.10 0.17 -0.98 16 12 C 0.00 -0.05 5.45 40.95 0.22 0.17 16 13 C -0.05 -1.92 11.79 83.52 0.98 -0.94 16 14 N -0.54 -19.27 11.25 -200.31 -2.25 -21.53 16 15 C 0.18 4.55 12.56 180.26 2.26 6.82 16 16 N -0.45 -10.06 3.15 -537.87 -1.70 -11.75 16 17 C 0.06 0.67 10.83 127.77 1.38 2.05 16 18 N -0.75 -34.32 4.30 -322.96 -1.39 -35.71 16 19 C -0.21 -12.15 10.41 84.03 0.87 -11.27 16 20 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 21 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 22 N -0.99 -66.56 13.97 21.65 0.30 -66.26 16 23 Si 0.94 48.96 27.74 68.60 1.90 50.86 16 24 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.31 -16.53 7.11 99.48 0.71 -15.82 16 26 H -0.26 -12.41 6.52 99.48 0.65 -11.77 16 27 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.42 6.26 8.60 -92.71 -0.80 5.46 16 36 H 0.14 1.54 7.63 -2.39 -0.02 1.52 16 37 H 0.13 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.15 5.65 8.06 -2.91 -0.02 5.63 16 39 H 0.24 3.59 8.06 -2.91 -0.02 3.56 16 40 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 0.86 7.67 -2.38 -0.02 0.85 16 43 H 0.36 16.37 5.66 -92.71 -0.52 15.85 16 44 H 0.25 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -92.92 366.34 3.26 -89.67 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -0.39 Total: 29.65 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 8.79 Total: 8.19 kcal Atomic # 7 Polarization: -146.79 SS G_CDS: -7.00 Total: -153.79 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.05 Total: -24.58 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.90 Total: 50.86 kcal Total: -92.92 3.26 -89.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135944520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.974 kcal (2) G-P(sol) polarization free energy of solvation -92.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds