Wall clock time and date at job start Tue Mar 31 2020 03:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34126 * 125.98799 * 2 1 4 4 C 1.30503 * 109.25574 * 180.02562 * 3 2 1 5 5 N 1.35044 * 108.69529 * 359.76873 * 4 3 2 6 6 H 0.97001 * 126.39466 * 180.27122 * 5 4 3 7 7 C 1.34667 * 125.98879 * 180.02562 * 2 1 3 8 8 C 1.50700 * 126.59268 * 359.95477 * 7 2 1 9 9 C 1.50707 * 109.46616 * 85.00480 * 8 7 2 10 10 O 1.21272 * 120.00150 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99511 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99550 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47509 * 324.99724 * 12 11 9 14 14 C 1.52999 * 109.47410 * 85.00095 * 12 11 9 15 15 C 1.52998 * 109.47164 * 205.00192 * 12 11 9 16 16 C 1.52998 * 109.47384 * 64.99625 * 15 12 11 17 17 H 1.09003 * 109.47082 * 305.00221 * 16 15 12 18 18 C 1.52995 * 109.47443 * 185.00170 * 16 15 12 19 19 N 1.46498 * 109.47009 * 65.00045 * 16 15 12 20 20 C 1.36935 * 120.00239 * 204.99963 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09003 * 109.46900 * 269.99928 * 1 2 3 29 29 H 1.09001 * 109.47392 * 29.99907 * 1 2 3 30 30 H 1.08996 * 109.47265 * 150.00609 * 1 2 3 31 31 H 1.07999 * 125.64514 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47352 * 325.00654 * 8 7 2 33 33 H 1.08994 * 109.47170 * 205.00273 * 8 7 2 34 34 H 0.96994 * 120.00258 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47191 * 299.99550 * 14 12 11 36 36 H 1.08996 * 109.47126 * 60.00048 * 14 12 11 37 37 H 1.09004 * 109.47346 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.46877 * 305.00014 * 15 12 11 39 39 H 1.08999 * 109.47306 * 185.00166 * 15 12 11 40 40 H 1.09003 * 109.46933 * 60.00266 * 18 16 15 41 41 H 1.09004 * 109.47411 * 179.97438 * 18 16 15 42 42 H 1.08996 * 109.47329 * 300.00343 * 18 16 15 43 43 H 0.97004 * 119.99747 * 25.00702 * 19 16 15 44 44 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5450 0.7095 -0.0006 5 7 3.5912 -0.6401 0.0042 6 1 4.3913 -1.1885 0.0087 7 6 2.2984 -1.0896 -0.0005 8 6 1.8473 -2.5275 -0.0002 9 6 1.5780 -2.9697 -1.4155 10 8 1.7372 -2.1939 -2.3339 11 7 1.1612 -4.2278 -1.6606 12 6 0.8999 -4.6578 -3.0365 13 1 0.4887 -3.8242 -3.6059 14 6 2.2069 -5.1214 -3.6828 15 6 -0.1028 -5.8134 -3.0280 16 6 -1.4488 -5.3168 -2.4966 17 1 -1.3063 -4.8578 -1.5182 18 6 -2.4142 -6.4970 -2.3704 19 7 -2.0050 -4.3280 -3.4235 20 6 -2.8898 -3.3863 -2.9702 21 1 -3.1774 -3.3723 -1.9292 22 6 -3.4172 -2.4497 -3.8485 23 7 -3.0625 -2.4633 -5.1160 24 14 -4.6237 -1.1647 -3.2301 25 1 -5.0303 -0.2852 -4.3554 26 1 -5.8226 -1.8397 -2.6711 27 1 -3.9773 -0.3476 -2.1719 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 4.4004 1.3688 -0.0003 32 1 0.9356 -2.6222 0.5898 33 1 2.6274 -3.1530 0.4337 34 1 1.0342 -4.8484 -0.9261 35 1 2.9213 -4.2981 -3.6890 36 1 2.6181 -5.9550 -3.1136 37 1 2.0124 -5.4418 -4.7064 38 1 0.2689 -6.6121 -2.3861 39 1 -0.2298 -6.1918 -4.0423 40 1 -2.0004 -7.2327 -1.6807 41 1 -3.3730 -6.1433 -1.9914 42 1 -2.5567 -6.9560 -3.3487 43 1 -1.7465 -4.3404 -4.3583 44 1 -2.4357 -3.1304 -5.4371 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136030806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:28 Heat of formation + Delta-G solvation = 16.245663 kcal Electronic energy + Delta-G solvation = -24524.978114 eV Core-core repulsion = 21092.081980 eV Total energy + Delta-G solvation = -3432.896134 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03963 -39.50018 -36.94061 -34.59901 -33.00534 -32.78548 -32.23259 -30.69848 -28.57055 -28.27420 -26.41042 -25.70760 -23.39617 -22.00681 -21.34685 -20.43858 -19.87393 -19.43923 -17.74548 -17.40861 -16.93588 -15.88560 -15.30484 -14.98425 -14.69668 -14.30102 -14.22828 -13.58944 -13.51585 -13.30127 -13.12890 -13.02999 -12.62649 -12.50530 -12.30779 -12.14340 -11.95273 -11.80789 -11.70024 -11.68513 -11.01272 -10.69998 -10.47864 -10.44622 -10.09579 -9.89865 -9.87081 -9.80904 -9.54550 -9.08575 -8.84037 -8.74751 -8.10855 -6.95017 -6.00301 -3.00080 2.02809 2.89929 3.10154 3.21465 3.55121 3.57585 3.62568 3.78920 4.57088 4.75255 4.76023 4.91840 4.96559 5.12738 5.30290 5.33932 5.39722 5.44110 5.50910 5.58433 5.68858 5.80811 5.85859 5.92208 5.99077 6.04697 6.20989 6.21105 6.23615 6.26835 6.35292 6.36986 6.46787 6.61538 6.76000 6.86573 6.90563 7.00892 7.41584 7.75689 7.87663 8.17095 8.52784 8.84482 9.31246 10.17596 10.32124 11.47963 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.005717 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.860534 B = 4896.428791 C = 6555.406539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.029 3.971 3 N -0.491 5.491 4 C 0.183 3.817 5 N -0.565 5.565 6 H 0.415 0.585 7 C -0.009 4.009 8 C -0.064 4.064 9 C 0.511 3.489 10 O -0.520 6.520 11 N -0.718 5.718 12 C 0.145 3.855 13 H 0.101 0.899 14 C -0.160 4.160 15 C -0.132 4.132 16 C 0.178 3.822 17 H 0.047 0.953 18 C -0.165 4.165 19 N -0.731 5.731 20 C -0.326 4.326 21 H 0.061 0.939 22 C -0.042 4.042 23 N -0.943 5.943 24 Si 1.073 2.927 25 H -0.285 1.285 26 H -0.297 1.297 27 H -0.294 1.294 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.206 0.794 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.394 0.606 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.365 0.635 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.778 -5.455 12.627 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 N -0.211 5.211 4 C -0.100 4.100 5 N -0.169 5.169 6 H 0.252 0.748 7 C -0.123 4.123 8 C -0.105 4.105 9 C 0.296 3.704 10 O -0.394 6.394 11 N -0.370 5.370 12 C 0.041 3.959 13 H 0.119 0.881 14 C -0.219 4.219 15 C -0.171 4.171 16 C 0.068 3.932 17 H 0.065 0.935 18 C -0.225 4.225 19 N -0.374 5.374 20 C -0.457 4.457 21 H 0.079 0.921 22 C -0.240 4.240 23 N -0.588 5.588 24 Si 0.905 3.095 25 H -0.211 1.211 26 H -0.225 1.225 27 H -0.221 1.221 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.222 0.778 32 H 0.133 0.867 33 H 0.113 0.887 34 H 0.227 0.773 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.198 0.802 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.553 -2.695 11.715 18.116 hybrid contribution 1.729 -2.799 0.517 3.331 sum 15.282 -5.494 12.233 20.331 Atomic orbital electron populations 1.20094 0.87399 1.03850 1.01687 1.20507 0.96531 0.87650 1.05320 1.70174 1.00527 1.30822 1.19615 1.24823 0.97373 0.81817 1.05992 1.43069 1.07774 1.08643 1.57380 0.74802 1.20140 0.83976 0.95443 1.12789 1.20026 1.03679 0.90744 0.96067 1.20350 0.77447 0.81918 0.90713 1.90766 1.50361 1.52353 1.45969 1.45937 1.68883 1.12749 1.09397 1.20975 0.93944 0.98555 0.82422 0.88069 1.22178 0.98137 1.00810 1.00730 1.22186 0.96134 0.96496 1.02255 1.20143 0.89572 0.89403 0.94106 0.93471 1.22448 1.01297 0.98710 1.00075 1.42400 1.53385 1.34456 1.07187 1.19924 1.20744 1.09489 0.95534 0.92092 1.25653 1.02816 1.00743 0.94808 1.70879 1.35997 1.37532 1.14421 0.83335 0.75334 0.75954 0.74915 1.21097 1.22458 1.22084 0.91630 0.90917 0.90781 0.77764 0.86653 0.88720 0.77302 0.92670 0.93130 0.91835 0.91960 0.90875 0.94654 0.92820 0.93720 0.80172 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.13 36.01 0.36 -0.82 16 2 C 0.03 0.48 7.09 -82.85 -0.59 -0.11 16 3 N -0.49 -8.11 11.25 -10.87 -0.12 -8.24 16 4 C 0.18 2.24 13.04 -90.37 -1.18 1.06 16 5 N -0.57 -6.28 6.15 -10.30 -0.06 -6.34 16 6 H 0.41 3.03 8.96 -40.82 -0.37 2.66 16 7 C -0.01 -0.12 5.73 -81.60 -0.47 -0.59 16 8 C -0.06 -0.73 5.81 -29.03 -0.17 -0.89 16 9 C 0.51 7.91 7.79 -10.98 -0.09 7.83 16 10 O -0.52 -10.84 15.70 5.56 0.09 -10.76 16 11 N -0.72 -9.73 4.45 -53.81 -0.24 -9.97 16 12 C 0.15 2.27 2.52 -67.93 -0.17 2.10 16 13 H 0.10 2.14 7.06 -51.93 -0.37 1.77 16 14 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 15 C -0.13 -1.94 4.29 -26.73 -0.11 -2.06 16 16 C 0.18 3.30 2.84 -67.93 -0.19 3.11 16 17 H 0.05 0.89 7.56 -51.93 -0.39 0.50 16 18 C -0.17 -2.85 9.49 37.16 0.35 -2.50 16 19 N -0.73 -17.73 4.49 -53.43 -0.24 -17.97 16 20 C -0.33 -9.07 9.93 -15.06 -0.15 -9.22 16 21 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 22 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 23 N -0.94 -29.75 13.70 55.49 0.76 -28.99 16 24 Si 1.07 26.72 29.92 -169.99 -5.09 21.64 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.30 7.89 -51.93 -0.41 0.89 16 31 H 0.21 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.12 1.17 8.03 -51.93 -0.42 0.75 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.39 4.01 8.60 -40.82 -0.35 3.66 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.37 9.34 6.63 -40.82 -0.27 9.07 16 44 H 0.25 7.89 6.77 -40.82 -0.28 7.61 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -37.93 367.58 -8.64 -46.56 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -7.13 Total: 13.73 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.14 Total: -5.21 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: 0.10 Total: -71.50 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 26.72 SS G_CDS: -5.09 Total: 21.64 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.93 -8.64 -46.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136030806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.808 kcal (2) G-P(sol) polarization free energy of solvation -37.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds