Wall clock time and date at job start Tue Mar 31 2020 03:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34126 * 125.98799 * 2 1 4 4 C 1.30503 * 109.25574 * 180.02562 * 3 2 1 5 5 N 1.35044 * 108.69529 * 359.76873 * 4 3 2 6 6 H 0.97001 * 126.39466 * 180.27122 * 5 4 3 7 7 C 1.34667 * 125.98879 * 180.02562 * 2 1 3 8 8 C 1.50700 * 126.59268 * 359.95477 * 7 2 1 9 9 C 1.50707 * 109.46616 * 85.00480 * 8 7 2 10 10 O 1.21272 * 120.00150 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99511 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99550 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47509 * 324.99724 * 12 11 9 14 14 C 1.52999 * 109.47410 * 85.00095 * 12 11 9 15 15 C 1.52998 * 109.47164 * 205.00192 * 12 11 9 16 16 C 1.52998 * 109.47384 * 64.99625 * 15 12 11 17 17 H 1.09003 * 109.47082 * 305.00221 * 16 15 12 18 18 C 1.52995 * 109.47443 * 185.00170 * 16 15 12 19 19 N 1.46498 * 109.47009 * 65.00045 * 16 15 12 20 20 C 1.36935 * 120.00239 * 204.99963 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09003 * 109.46900 * 269.99928 * 1 2 3 29 29 H 1.09001 * 109.47392 * 29.99907 * 1 2 3 30 30 H 1.08996 * 109.47265 * 150.00609 * 1 2 3 31 31 H 1.07999 * 125.64514 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47352 * 325.00654 * 8 7 2 33 33 H 1.08994 * 109.47170 * 205.00273 * 8 7 2 34 34 H 0.96994 * 120.00258 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47191 * 299.99550 * 14 12 11 36 36 H 1.08996 * 109.47126 * 60.00048 * 14 12 11 37 37 H 1.09004 * 109.47346 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.46877 * 305.00014 * 15 12 11 39 39 H 1.08999 * 109.47306 * 185.00166 * 15 12 11 40 40 H 1.09003 * 109.46933 * 60.00266 * 18 16 15 41 41 H 1.09004 * 109.47411 * 179.97438 * 18 16 15 42 42 H 1.08996 * 109.47329 * 300.00343 * 18 16 15 43 43 H 0.97004 * 119.99747 * 25.00702 * 19 16 15 44 44 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5450 0.7095 -0.0006 5 7 3.5912 -0.6401 0.0042 6 1 4.3913 -1.1885 0.0087 7 6 2.2984 -1.0896 -0.0005 8 6 1.8473 -2.5275 -0.0002 9 6 1.5780 -2.9697 -1.4155 10 8 1.7372 -2.1939 -2.3339 11 7 1.1612 -4.2278 -1.6606 12 6 0.8999 -4.6578 -3.0365 13 1 0.4887 -3.8242 -3.6059 14 6 2.2069 -5.1214 -3.6828 15 6 -0.1028 -5.8134 -3.0280 16 6 -1.4488 -5.3168 -2.4966 17 1 -1.3063 -4.8578 -1.5182 18 6 -2.4142 -6.4970 -2.3704 19 7 -2.0050 -4.3280 -3.4235 20 6 -2.8898 -3.3863 -2.9702 21 1 -3.1774 -3.3723 -1.9292 22 6 -3.4172 -2.4497 -3.8485 23 7 -3.0625 -2.4633 -5.1160 24 14 -4.6237 -1.1647 -3.2301 25 1 -5.0303 -0.2852 -4.3554 26 1 -5.8226 -1.8397 -2.6711 27 1 -3.9773 -0.3476 -2.1719 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 4.4004 1.3688 -0.0003 32 1 0.9356 -2.6222 0.5898 33 1 2.6274 -3.1530 0.4337 34 1 1.0342 -4.8484 -0.9261 35 1 2.9213 -4.2981 -3.6890 36 1 2.6181 -5.9550 -3.1136 37 1 2.0124 -5.4418 -4.7064 38 1 0.2689 -6.6121 -2.3861 39 1 -0.2298 -6.1918 -4.0423 40 1 -2.0004 -7.2327 -1.6807 41 1 -3.3730 -6.1433 -1.9914 42 1 -2.5567 -6.9560 -3.3487 43 1 -1.7465 -4.3404 -4.3583 44 1 -2.4357 -3.1304 -5.4371 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136030806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:28 Heat of formation + Delta-G solvation = -11.542506 kcal Electronic energy + Delta-G solvation = -24526.183099 eV Core-core repulsion = 21092.081980 eV Total energy + Delta-G solvation = -3434.101120 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.05356 -40.74701 -38.42620 -36.22073 -34.19721 -34.06151 -33.75025 -31.97008 -30.17629 -29.64621 -27.66350 -26.79440 -25.52202 -23.14298 -22.46478 -21.75625 -21.29002 -20.52689 -19.44512 -18.71280 -18.15988 -17.13879 -16.69009 -16.36322 -15.96273 -15.90679 -15.46305 -15.43955 -14.74381 -14.67193 -14.44599 -14.16015 -13.77482 -13.69801 -13.57926 -13.46837 -13.17105 -13.14416 -12.98568 -12.90437 -12.74655 -12.51060 -12.17136 -11.90997 -11.84671 -11.55614 -11.15814 -10.99249 -10.93972 -10.87857 -10.72360 -9.98421 -9.17456 -9.02748 -8.31770 -5.23313 1.00751 1.54157 1.65269 1.73014 1.79392 2.09991 2.24297 2.47939 2.73058 3.47199 3.61301 3.73386 3.80593 3.86878 4.02633 4.08312 4.14963 4.33128 4.36862 4.44675 4.48744 4.54399 4.63191 4.72987 4.76822 4.77182 4.88159 4.96519 4.98662 5.03328 5.04538 5.17607 5.23237 5.28535 5.38002 5.56496 5.62035 5.68921 5.78084 6.55702 6.59630 6.68489 7.14851 7.18092 7.41165 8.08649 8.20264 9.20535 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.005717 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.860534 B = 4896.428791 C = 6555.406539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.016 4.016 3 N -0.542 5.542 4 C 0.194 3.806 5 N -0.551 5.551 6 H 0.435 0.565 7 C -0.008 4.008 8 C -0.055 4.055 9 C 0.506 3.494 10 O -0.584 6.584 11 N -0.704 5.704 12 C 0.148 3.852 13 H 0.037 0.963 14 C -0.149 4.149 15 C -0.118 4.118 16 C 0.169 3.831 17 H 0.047 0.953 18 C -0.156 4.156 19 N -0.744 5.744 20 C -0.310 4.310 21 H 0.064 0.936 22 C -0.109 4.109 23 N -0.981 5.981 24 Si 1.113 2.887 25 H -0.298 1.298 26 H -0.273 1.273 27 H -0.282 1.282 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.249 0.751 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.415 0.585 35 H 0.036 0.964 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.027 0.973 42 H 0.038 0.962 43 H 0.354 0.646 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.618 -7.857 15.336 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 N -0.262 5.262 4 C -0.091 4.091 5 N -0.156 5.156 6 H 0.276 0.724 7 C -0.124 4.124 8 C -0.096 4.096 9 C 0.293 3.707 10 O -0.463 6.463 11 N -0.357 5.357 12 C 0.043 3.957 13 H 0.056 0.944 14 C -0.207 4.207 15 C -0.156 4.156 16 C 0.061 3.939 17 H 0.065 0.935 18 C -0.216 4.216 19 N -0.386 5.386 20 C -0.442 4.442 21 H 0.082 0.918 22 C -0.300 4.300 23 N -0.631 5.631 24 Si 0.940 3.060 25 H -0.224 1.224 26 H -0.199 1.199 27 H -0.209 1.209 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.265 0.735 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.252 0.748 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.046 0.954 42 H 0.057 0.943 43 H 0.186 0.814 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 15.417 -5.206 14.508 21.801 hybrid contribution 1.244 -2.111 -0.272 2.466 sum 16.661 -7.318 14.236 23.104 Atomic orbital electron populations 1.19972 0.88460 1.01574 1.02401 1.20656 0.96668 0.89122 1.07999 1.70095 1.02438 1.31838 1.21852 1.25648 0.97297 0.82718 1.03400 1.43029 1.07741 1.08620 1.56202 0.72396 1.20369 0.84661 0.95961 1.11455 1.20111 1.06033 0.90017 0.93390 1.21090 0.76226 0.81650 0.91774 1.90750 1.53200 1.54069 1.48257 1.45799 1.67739 1.12792 1.09323 1.20739 0.95279 0.96687 0.83002 0.94443 1.22063 0.96230 1.01211 1.01245 1.22085 0.93463 0.97037 1.03058 1.20474 0.91722 0.88741 0.92982 0.93537 1.22301 0.99708 0.98739 1.00825 1.42638 1.53105 1.35235 1.07601 1.20242 1.19529 1.09063 0.95334 0.91834 1.26898 1.05071 1.03308 0.94711 1.70983 1.37727 1.38513 1.15851 0.82814 0.74608 0.74190 0.74424 1.22445 1.19919 1.20852 0.89435 0.93134 0.92932 0.73548 0.85156 0.83727 0.74802 0.94515 0.89541 0.91715 0.87122 0.91087 0.90172 0.95352 0.94255 0.81441 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 10.13 71.24 0.72 -1.53 16 2 C -0.02 -0.55 7.09 41.39 0.29 -0.26 16 3 N -0.54 -17.91 11.25 -188.31 -2.12 -20.02 16 4 C 0.19 4.39 13.04 180.26 2.35 6.75 16 5 N -0.55 -10.98 6.15 -186.49 -1.15 -12.12 16 6 H 0.44 4.90 8.96 -92.71 -0.83 4.07 16 7 C -0.01 -0.21 5.73 40.95 0.23 0.02 16 8 C -0.05 -1.11 5.81 29.10 0.17 -0.94 16 9 C 0.51 15.20 7.79 87.66 0.68 15.88 16 10 O -0.58 -25.11 15.70 -3.01 -0.05 -25.16 16 11 N -0.70 -17.62 4.45 -442.54 -1.97 -19.59 16 12 C 0.15 4.50 2.52 44.99 0.11 4.61 16 13 H 0.04 1.65 7.06 -2.39 -0.02 1.64 16 14 C -0.15 -3.70 9.48 71.98 0.68 -3.02 16 15 C -0.12 -3.17 4.29 30.59 0.13 -3.04 16 16 C 0.17 6.00 2.84 44.99 0.13 6.13 16 17 H 0.05 1.67 7.56 -2.39 -0.02 1.65 16 18 C -0.16 -4.99 9.49 71.98 0.68 -4.31 16 19 N -0.74 -36.74 4.49 -322.95 -1.45 -38.19 16 20 C -0.31 -17.56 9.93 84.03 0.83 -16.72 16 21 H 0.06 3.51 7.83 -2.91 -0.02 3.48 16 22 C -0.11 -6.60 5.50 84.86 0.47 -6.13 16 23 N -0.98 -64.57 13.70 21.65 0.30 -64.27 16 24 Si 1.11 55.16 29.92 68.60 2.05 57.21 16 25 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 27 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 28 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.95 7.89 -2.39 -0.02 1.93 16 31 H 0.25 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.13 2.28 8.03 -2.39 -0.02 2.26 16 33 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.41 6.78 8.60 -92.71 -0.80 5.98 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.35 18.90 6.63 -92.71 -0.61 18.28 16 44 H 0.24 15.84 6.77 -92.71 -0.63 15.21 16 Total: -1.00 -90.17 367.58 2.03 -88.14 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -1.08 Total: 36.55 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 7.49 Total: -2.55 kcal Atomic # 7 Polarization: -147.82 SS G_CDS: -6.39 Total: -154.20 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 14 Polarization: 55.16 SS G_CDS: 2.05 Total: 57.21 kcal Total: -90.17 2.03 -88.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136030806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.600 kcal (2) G-P(sol) polarization free energy of solvation -90.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds