Wall clock time and date at job start Tue Mar 31 2020 03:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47284 * 2 1 4 4 N 1.33318 * 126.11094 * 270.12589 * 3 2 1 5 5 C 1.30863 * 109.68808 * 180.27280 * 4 3 2 6 6 N 1.34497 * 109.16078 * 359.76607 * 5 4 3 7 7 H 0.96991 * 126.46952 * 179.97438 * 6 5 4 8 8 C 1.36667 * 126.10443 * 90.00442 * 3 2 1 9 9 C 1.46755 * 126.84678 * 0.02562 * 8 3 2 10 10 O 1.21687 * 119.99961 * 359.70981 * 9 8 3 11 11 N 1.34777 * 120.00412 * 179.71488 * 9 8 3 12 12 C 1.46495 * 120.00230 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47062 * 324.99175 * 12 11 9 14 14 C 1.52999 * 109.47657 * 84.99077 * 12 11 9 15 15 C 1.53002 * 109.47317 * 204.99663 * 12 11 9 16 16 C 1.53003 * 109.47269 * 64.99221 * 15 12 11 17 17 H 1.09000 * 109.46953 * 305.00936 * 16 15 12 18 18 C 1.52996 * 109.47332 * 185.00423 * 16 15 12 19 19 N 1.46505 * 109.46807 * 65.00478 * 16 15 12 20 20 C 1.36931 * 119.99788 * 205.00000 * 19 16 15 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 16 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 H 1.08998 * 109.47509 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46935 * 299.99720 * 1 2 3 30 30 H 1.09000 * 109.47265 * 59.99423 * 1 2 3 31 31 H 1.09008 * 109.46935 * 240.00280 * 2 1 3 32 32 H 1.09000 * 109.47265 * 120.00577 * 2 1 3 33 33 H 1.07993 * 125.41577 * 179.74129 * 5 4 3 34 34 H 0.97000 * 119.99724 * 359.97438 * 11 9 8 35 35 H 1.08991 * 109.47415 * 300.00577 * 14 12 11 36 36 H 1.09005 * 109.46583 * 60.00443 * 14 12 11 37 37 H 1.09001 * 109.47265 * 179.97438 * 14 12 11 38 38 H 1.09000 * 109.46766 * 304.99737 * 15 12 11 39 39 H 1.08992 * 109.47398 * 184.99831 * 15 12 11 40 40 H 1.09002 * 109.46807 * 300.00318 * 18 16 15 41 41 H 1.08998 * 109.47019 * 59.99816 * 18 16 15 42 42 H 1.08998 * 109.47099 * 180.02562 * 18 16 15 43 43 H 0.97000 * 119.99792 * 24.99795 * 19 16 15 44 44 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2920 2.1623 -1.0770 5 6 2.7167 3.3435 -0.7071 6 7 2.7398 3.4035 0.6363 7 1 3.0134 4.1623 1.1749 8 6 2.3009 2.1800 1.1042 9 6 2.1580 1.7741 2.5073 10 8 1.7581 0.6577 2.7800 11 7 2.4696 2.6379 3.4938 12 6 2.3275 2.2325 4.8943 13 1 1.4654 1.5733 4.9961 14 6 3.5902 1.4935 5.3421 15 6 2.1265 3.4734 5.7666 16 6 0.8000 4.1433 5.4025 17 1 0.7816 4.3557 4.3335 18 6 0.6570 5.4504 6.1847 19 7 -0.3087 3.2476 5.7414 20 6 -1.5040 3.3580 5.0827 21 1 -1.6295 4.1052 4.3130 22 6 -2.5527 2.5055 5.3999 23 7 -3.6999 2.6081 4.7630 24 14 -2.3356 1.2127 6.7307 25 1 -2.7296 1.7831 8.0439 26 1 -3.1911 0.0383 6.4243 27 1 -0.9131 0.7890 6.7819 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.0035 4.1428 -1.3744 34 1 2.7886 3.5278 3.2764 35 1 3.7334 0.6096 4.7208 36 1 4.4523 2.1528 5.2404 37 1 3.4846 1.1923 6.3843 38 1 2.9452 4.1728 5.5975 39 1 2.1096 3.1807 6.8164 40 1 0.6754 5.2378 7.2537 41 1 1.4819 6.1168 5.9326 42 1 -0.2882 5.9274 5.9256 43 1 -0.1959 2.5762 6.4324 44 1 -4.4328 2.0127 4.9849 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136063467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:52 Heat of formation + Delta-G solvation = 17.030363 kcal Electronic energy + Delta-G solvation = -24676.701609 eV Core-core repulsion = 21243.839502 eV Total energy + Delta-G solvation = -3432.862107 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.23635 -39.36299 -37.00156 -34.82570 -33.98575 -32.36505 -31.94231 -30.78725 -29.29406 -28.76176 -26.48801 -24.19175 -23.32796 -22.79838 -21.81364 -20.63653 -19.90695 -19.56885 -18.73508 -17.59951 -16.19193 -15.99257 -15.53188 -14.94044 -14.71775 -14.35377 -14.19964 -13.82794 -13.72597 -13.60537 -13.23037 -13.07306 -12.68501 -12.43763 -12.20062 -12.14544 -12.03178 -11.78856 -11.29317 -11.22500 -10.95170 -10.76037 -10.69770 -10.55202 -10.34573 -10.30818 -10.04034 -9.99530 -9.64133 -9.56192 -8.94552 -8.91190 -8.45417 -7.24980 -5.73527 -3.09015 1.34913 2.81804 2.86920 3.25963 3.41082 3.43347 3.49497 3.50283 4.39668 4.62881 4.79390 4.90467 5.04348 5.16874 5.18125 5.27254 5.46508 5.55899 5.65544 5.69621 5.71995 5.73667 5.75489 5.80993 5.85640 5.93506 6.11502 6.19307 6.23934 6.25996 6.36126 6.41350 6.46969 6.55777 6.63061 6.69624 6.75328 6.92809 7.13212 7.57067 7.91115 8.00163 8.36190 8.44850 9.22945 9.95857 10.14582 11.44923 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.005558 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.219913 B = 5036.945488 C = 5855.999404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 C 0.099 3.901 4 N -0.499 5.499 5 C 0.213 3.787 6 N -0.555 5.555 7 H 0.421 0.579 8 C -0.083 4.083 9 C 0.596 3.404 10 O -0.514 6.514 11 N -0.716 5.716 12 C 0.144 3.856 13 H 0.103 0.897 14 C -0.162 4.162 15 C -0.135 4.135 16 C 0.177 3.823 17 H 0.051 0.949 18 C -0.166 4.166 19 N -0.744 5.744 20 C -0.240 4.240 21 H 0.086 0.914 22 C 0.007 3.993 23 N -0.933 5.933 24 Si 0.883 3.117 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.276 1.276 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.213 0.787 34 H 0.388 0.612 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.036 0.964 42 H 0.057 0.943 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.336 2.856 -5.440 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.035 4.035 4 N -0.218 5.218 5 C -0.071 4.071 6 N -0.161 5.161 7 H 0.259 0.741 8 C -0.199 4.199 9 C 0.382 3.618 10 O -0.388 6.388 11 N -0.367 5.367 12 C 0.040 3.960 13 H 0.121 0.879 14 C -0.220 4.220 15 C -0.174 4.174 16 C 0.068 3.932 17 H 0.069 0.931 18 C -0.226 4.226 19 N -0.388 5.388 20 C -0.370 4.370 21 H 0.104 0.896 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.713 3.287 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.202 1.202 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.230 0.770 34 H 0.220 0.780 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.193 0.807 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.734 1.797 -6.173 18.863 hybrid contribution 0.380 0.532 1.866 1.977 sum 18.114 2.329 -4.306 18.764 Atomic orbital electron populations 1.21633 0.93990 1.01845 1.02354 1.20050 0.96554 0.88623 1.03278 1.21050 0.98729 0.97158 0.86593 1.70106 1.18357 1.02778 1.30588 1.25075 1.01966 0.98025 0.82071 1.43303 1.50521 1.13464 1.08767 0.74109 1.21055 1.15358 0.88059 0.95380 1.16745 0.77485 0.85158 0.82418 1.90836 1.45343 1.20031 1.82616 1.45836 1.68122 1.16174 1.06549 1.21040 0.98996 0.97000 0.78924 0.87877 1.22197 0.97524 1.00649 1.01654 1.22232 0.98792 0.96387 0.99965 1.20177 0.86143 0.89554 0.97348 0.93085 1.22428 1.00696 0.98823 1.00639 1.42757 1.11089 1.39625 1.45296 1.18969 0.87592 1.15220 1.15230 0.89590 1.24640 0.95863 0.99094 0.99290 1.69693 1.03280 1.41039 1.44093 0.86573 0.77323 0.82371 0.82404 1.21297 1.21754 1.20240 0.92283 0.91838 0.93018 0.91003 0.88910 0.77030 0.77953 0.92239 0.93009 0.91690 0.91660 0.90537 0.93543 0.94462 0.92386 0.80716 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 37.16 0.37 -1.84 16 2 C -0.05 -0.70 5.93 -27.89 -0.17 -0.87 16 3 C 0.10 1.52 6.40 -82.52 -0.53 0.99 16 4 N -0.50 -7.06 11.20 -10.65 -0.12 -7.18 16 5 C 0.21 2.14 13.01 -90.57 -1.18 0.96 16 6 N -0.56 -5.53 6.07 -10.79 -0.07 -5.60 16 7 H 0.42 2.61 8.32 -40.82 -0.34 2.28 16 8 C -0.08 -1.20 7.08 -82.14 -0.58 -1.78 16 9 C 0.60 9.72 7.75 -12.82 -0.10 9.62 16 10 O -0.51 -10.19 14.48 5.20 0.08 -10.12 16 11 N -0.72 -9.67 4.44 -55.09 -0.24 -9.92 16 12 C 0.14 2.11 2.52 -67.93 -0.17 1.94 16 13 H 0.10 1.99 7.05 -51.93 -0.37 1.63 16 14 C -0.16 -1.98 9.48 37.16 0.35 -1.63 16 15 C -0.14 -1.82 4.29 -26.73 -0.11 -1.93 16 16 C 0.18 3.10 2.84 -67.93 -0.19 2.91 16 17 H 0.05 0.93 7.56 -51.93 -0.39 0.54 16 18 C -0.17 -2.67 9.49 37.16 0.35 -2.31 16 19 N -0.74 -16.92 4.30 -53.42 -0.23 -17.15 16 20 C -0.24 -6.71 10.41 -15.06 -0.16 -6.87 16 21 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 23 N -0.93 -29.70 13.97 55.49 0.78 -28.93 16 24 Si 0.88 22.58 27.74 -169.99 -4.72 17.87 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.28 -6.66 6.51 56.52 0.37 -6.29 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.09 1.47 6.48 -51.93 -0.34 1.13 16 33 H 0.21 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.39 3.94 7.85 -40.82 -0.32 3.62 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.36 8.18 5.66 -40.82 -0.23 7.95 16 44 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -35.99 362.57 -8.34 -44.34 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -7.07 Total: 11.91 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.21 Total: -0.68 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: 0.12 Total: -68.78 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.72 Total: 17.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.99 -8.34 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136063467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.367 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds