Wall clock time and date at job start Tue Mar 31 2020 03:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47284 * 2 1 4 4 N 1.33318 * 126.11094 * 270.12589 * 3 2 1 5 5 C 1.30863 * 109.68808 * 180.27280 * 4 3 2 6 6 N 1.34497 * 109.16078 * 359.76607 * 5 4 3 7 7 H 0.96991 * 126.46952 * 179.97438 * 6 5 4 8 8 C 1.36667 * 126.10443 * 90.00442 * 3 2 1 9 9 C 1.46755 * 126.84678 * 0.02562 * 8 3 2 10 10 O 1.21687 * 119.99961 * 359.70981 * 9 8 3 11 11 N 1.34777 * 120.00412 * 179.71488 * 9 8 3 12 12 C 1.46495 * 120.00230 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47062 * 324.99175 * 12 11 9 14 14 C 1.52999 * 109.47657 * 84.99077 * 12 11 9 15 15 C 1.53002 * 109.47317 * 204.99663 * 12 11 9 16 16 C 1.53003 * 109.47269 * 64.99221 * 15 12 11 17 17 H 1.09000 * 109.46953 * 305.00936 * 16 15 12 18 18 C 1.52996 * 109.47332 * 185.00423 * 16 15 12 19 19 N 1.46505 * 109.46807 * 65.00478 * 16 15 12 20 20 C 1.36931 * 119.99788 * 205.00000 * 19 16 15 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 16 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 H 1.08998 * 109.47509 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46935 * 299.99720 * 1 2 3 30 30 H 1.09000 * 109.47265 * 59.99423 * 1 2 3 31 31 H 1.09008 * 109.46935 * 240.00280 * 2 1 3 32 32 H 1.09000 * 109.47265 * 120.00577 * 2 1 3 33 33 H 1.07993 * 125.41577 * 179.74129 * 5 4 3 34 34 H 0.97000 * 119.99724 * 359.97438 * 11 9 8 35 35 H 1.08991 * 109.47415 * 300.00577 * 14 12 11 36 36 H 1.09005 * 109.46583 * 60.00443 * 14 12 11 37 37 H 1.09001 * 109.47265 * 179.97438 * 14 12 11 38 38 H 1.09000 * 109.46766 * 304.99737 * 15 12 11 39 39 H 1.08992 * 109.47398 * 184.99831 * 15 12 11 40 40 H 1.09002 * 109.46807 * 300.00318 * 18 16 15 41 41 H 1.08998 * 109.47019 * 59.99816 * 18 16 15 42 42 H 1.08998 * 109.47099 * 180.02562 * 18 16 15 43 43 H 0.97000 * 119.99792 * 24.99795 * 19 16 15 44 44 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2920 2.1623 -1.0770 5 6 2.7167 3.3435 -0.7071 6 7 2.7398 3.4035 0.6363 7 1 3.0134 4.1623 1.1749 8 6 2.3009 2.1800 1.1042 9 6 2.1580 1.7741 2.5073 10 8 1.7581 0.6577 2.7800 11 7 2.4696 2.6379 3.4938 12 6 2.3275 2.2325 4.8943 13 1 1.4654 1.5733 4.9961 14 6 3.5902 1.4935 5.3421 15 6 2.1265 3.4734 5.7666 16 6 0.8000 4.1433 5.4025 17 1 0.7816 4.3557 4.3335 18 6 0.6570 5.4504 6.1847 19 7 -0.3087 3.2476 5.7414 20 6 -1.5040 3.3580 5.0827 21 1 -1.6295 4.1052 4.3130 22 6 -2.5527 2.5055 5.3999 23 7 -3.6999 2.6081 4.7630 24 14 -2.3356 1.2127 6.7307 25 1 -2.7296 1.7831 8.0439 26 1 -3.1911 0.0383 6.4243 27 1 -0.9131 0.7890 6.7819 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.0035 4.1428 -1.3744 34 1 2.7886 3.5278 3.2764 35 1 3.7334 0.6096 4.7208 36 1 4.4523 2.1528 5.2404 37 1 3.4846 1.1923 6.3843 38 1 2.9452 4.1728 5.5975 39 1 2.1096 3.1807 6.8164 40 1 0.6754 5.2378 7.2537 41 1 1.4819 6.1168 5.9326 42 1 -0.2882 5.9274 5.9256 43 1 -0.1959 2.5762 6.4324 44 1 -4.4328 2.0127 4.9849 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136063467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:51 Heat of formation + Delta-G solvation = -9.125396 kcal Electronic energy + Delta-G solvation = -24677.835808 eV Core-core repulsion = 21243.839502 eV Total energy + Delta-G solvation = -3433.996306 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.21303 -40.58327 -38.41701 -36.28083 -35.17923 -34.09936 -33.24005 -32.05819 -31.00853 -29.84272 -27.63282 -25.48481 -25.21570 -23.88959 -22.85755 -21.91745 -21.31760 -20.70091 -19.87850 -19.51759 -17.38386 -17.10679 -16.74673 -16.53273 -15.95742 -15.82421 -15.42072 -15.24351 -15.05910 -14.83002 -14.61154 -14.35881 -14.28991 -14.03185 -13.46389 -13.33776 -13.27553 -13.02249 -12.82951 -12.65798 -12.45644 -12.40483 -12.03454 -11.99770 -11.88547 -11.71153 -11.47837 -11.44839 -11.01393 -10.97942 -10.83975 -10.14608 -9.49922 -9.27884 -8.02069 -5.32305 0.29261 1.32925 1.38191 1.43704 1.86472 1.93259 2.21269 2.32495 2.47501 3.31125 3.51670 3.63824 3.73879 3.86082 4.03664 4.12693 4.20967 4.31829 4.46320 4.48966 4.52674 4.63374 4.65046 4.74260 4.74708 4.80295 4.87326 4.98411 5.01133 5.06053 5.17406 5.21732 5.28512 5.30581 5.35570 5.51768 5.55440 5.59002 5.78229 6.22517 6.37380 6.50703 6.94279 7.10618 7.20056 7.89278 8.04537 9.20114 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.005558 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.219913 B = 5036.945488 C = 5855.999404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.045 4.045 3 C 0.078 3.922 4 N -0.534 5.534 5 C 0.239 3.761 6 N -0.539 5.539 7 H 0.440 0.560 8 C -0.104 4.104 9 C 0.588 3.412 10 O -0.561 6.561 11 N -0.702 5.702 12 C 0.143 3.857 13 H 0.051 0.949 14 C -0.152 4.152 15 C -0.121 4.121 16 C 0.167 3.833 17 H 0.040 0.960 18 C -0.157 4.157 19 N -0.748 5.748 20 C -0.213 4.213 21 H 0.051 0.949 22 C -0.067 4.067 23 N -0.987 5.987 24 Si 0.948 3.052 25 H -0.275 1.275 26 H -0.304 1.304 27 H -0.255 1.255 28 H 0.072 0.928 29 H 0.023 0.977 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.267 0.733 34 H 0.406 0.594 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.024 0.976 43 H 0.362 0.638 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.878 4.644 -4.787 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.083 4.083 3 C -0.057 4.057 4 N -0.254 5.254 5 C -0.046 4.046 6 N -0.145 5.145 7 H 0.282 0.718 8 C -0.221 4.221 9 C 0.375 3.625 10 O -0.440 6.440 11 N -0.354 5.354 12 C 0.038 3.962 13 H 0.069 0.931 14 C -0.210 4.210 15 C -0.159 4.159 16 C 0.059 3.941 17 H 0.058 0.942 18 C -0.217 4.217 19 N -0.392 5.392 20 C -0.345 4.345 21 H 0.069 0.931 22 C -0.258 4.258 23 N -0.638 5.638 24 Si 0.776 3.224 25 H -0.201 1.201 26 H -0.231 1.231 27 H -0.180 1.180 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.282 0.718 34 H 0.242 0.758 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.043 0.957 43 H 0.195 0.805 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 21.373 3.677 -5.476 22.367 hybrid contribution -0.647 0.131 1.534 1.670 sum 20.725 3.809 -3.942 21.438 Atomic orbital electron populations 1.21546 0.94905 1.02154 1.00412 1.19972 0.95675 0.89444 1.03235 1.21158 0.99385 0.97480 0.87649 1.70091 1.20269 1.04462 1.30574 1.26123 0.98401 0.97677 0.82366 1.43189 1.49620 1.12622 1.09059 0.71806 1.20771 1.17100 0.89932 0.94281 1.17078 0.76925 0.84872 0.83576 1.90805 1.47594 1.22112 1.83478 1.45694 1.67174 1.16636 1.05872 1.20967 0.98422 0.97147 0.79640 0.93064 1.22096 0.97103 1.00108 1.01695 1.22156 0.97425 0.96213 1.00114 1.20510 0.86566 0.89853 0.97125 0.94181 1.22286 1.00714 0.98112 1.00569 1.42813 1.10790 1.40734 1.44849 1.18921 0.89318 1.12860 1.13382 0.93062 1.25428 0.95824 1.02113 1.02465 1.69876 1.04444 1.42722 1.46773 0.85500 0.78061 0.79070 0.79727 1.20080 1.23124 1.17971 0.90932 0.95749 0.92649 0.89394 0.90422 0.71782 0.75762 0.94284 0.89942 0.90617 0.86936 0.89376 0.92963 0.90135 0.95693 0.80502 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.89 71.98 0.71 -3.69 16 2 C -0.04 -1.41 5.93 29.85 0.18 -1.23 16 3 C 0.08 2.41 6.40 41.96 0.27 2.68 16 4 N -0.53 -14.37 11.20 -187.59 -2.10 -16.47 16 5 C 0.24 4.05 13.01 180.33 2.35 6.39 16 6 N -0.54 -9.37 6.07 -188.04 -1.14 -10.51 16 7 H 0.44 3.91 8.32 -92.71 -0.77 3.14 16 8 C -0.10 -2.99 7.08 40.01 0.28 -2.70 16 9 C 0.59 19.48 7.75 86.47 0.67 20.15 16 10 O -0.56 -23.54 14.48 -4.31 -0.06 -23.61 16 11 N -0.70 -18.02 4.44 -446.43 -1.98 -20.00 16 12 C 0.14 3.93 2.52 44.99 0.11 4.05 16 13 H 0.05 1.99 7.05 -2.38 -0.02 1.97 16 14 C -0.15 -3.32 9.48 71.98 0.68 -2.64 16 15 C -0.12 -2.78 4.29 30.60 0.13 -2.65 16 16 C 0.17 5.49 2.84 44.99 0.13 5.62 16 17 H 0.04 1.41 7.56 -2.39 -0.02 1.39 16 18 C -0.16 -4.59 9.49 71.98 0.68 -3.91 16 19 N -0.75 -33.73 4.30 -322.93 -1.39 -35.12 16 20 C -0.21 -12.25 10.41 84.04 0.87 -11.38 16 21 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 22 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 23 N -0.99 -65.63 13.97 21.65 0.30 -65.32 16 24 Si 0.95 47.78 27.74 68.60 1.90 49.68 16 25 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.30 -15.86 7.11 99.48 0.71 -15.16 16 27 H -0.25 -11.76 6.51 99.48 0.65 -11.11 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.02 0.96 8.14 -2.38 -0.02 0.95 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.08 2.64 6.48 -2.39 -0.02 2.63 16 33 H 0.27 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.41 7.07 7.85 -92.71 -0.73 6.34 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.29 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.36 16.04 5.66 -92.71 -0.52 15.52 16 44 H 0.25 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -85.75 362.57 2.00 -83.74 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -1.06 Total: 30.55 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 7.54 Total: 7.05 kcal Atomic # 7 Polarization: -141.12 SS G_CDS: -6.31 Total: -147.43 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.61 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.90 Total: 49.68 kcal Total: -85.75 2.00 -83.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136063467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.619 kcal (2) G-P(sol) polarization free energy of solvation -85.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds