Wall clock time and date at job start Tue Mar 31 2020 03:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30505 * 125.65289 * 2 1 4 4 C 1.34130 * 109.25664 * 180.02562 * 3 2 1 5 5 C 1.34669 * 108.01901 * 359.73846 * 4 3 2 6 6 N 1.35049 * 125.64935 * 180.02562 * 2 1 3 7 7 C 1.46500 * 126.39506 * 359.95786 * 6 2 1 8 8 C 1.50700 * 109.47165 * 85.00435 * 7 6 2 9 9 O 1.21285 * 119.99650 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00479 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00457 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46927 * 34.99720 * 11 10 8 13 13 C 1.53007 * 109.46926 * 275.00188 * 11 10 8 14 14 C 1.52997 * 109.47416 * 155.00022 * 11 10 8 15 15 C 1.52999 * 109.47080 * 295.00201 * 14 11 10 16 16 H 1.09004 * 109.47434 * 54.99895 * 15 14 11 17 17 C 1.52997 * 109.47114 * 174.99701 * 15 14 11 18 18 N 1.46498 * 109.46963 * 294.99494 * 15 14 11 19 19 C 1.36943 * 119.99752 * 154.72381 * 18 15 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 15 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 15 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 H 1.09000 * 109.46644 * 269.95631 * 1 2 3 28 28 H 1.08995 * 109.47198 * 29.94867 * 1 2 3 29 29 H 1.08995 * 109.47556 * 149.95850 * 1 2 3 30 30 H 1.07994 * 125.98524 * 180.02562 * 4 3 2 31 31 H 1.08009 * 126.58911 * 180.28460 * 5 4 3 32 32 H 1.09000 * 109.47566 * 324.99997 * 7 6 2 33 33 H 1.09001 * 109.46931 * 204.99870 * 7 6 2 34 34 H 0.97009 * 119.99372 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.46936 * 299.99527 * 13 11 10 36 36 H 1.09000 * 109.46920 * 60.00186 * 13 11 10 37 37 H 1.08997 * 109.46639 * 180.02562 * 13 11 10 38 38 H 1.08997 * 109.47302 * 174.99664 * 14 11 10 39 39 H 1.09007 * 109.46917 * 55.00199 * 14 11 10 40 40 H 1.09009 * 109.47238 * 59.99946 * 17 15 14 41 41 H 1.08997 * 109.47293 * 179.97438 * 17 15 14 42 42 H 1.09003 * 109.47189 * 300.00067 * 17 15 14 43 43 H 0.97001 * 120.00384 * 335.00737 * 18 15 14 44 44 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 -0.0006 5 6 3.5925 -0.6643 0.0049 6 7 2.2940 -1.0974 -0.0005 7 6 1.8424 -2.4910 -0.0002 8 6 1.5690 -2.9308 -1.4155 9 8 1.7346 -2.1560 -2.3339 10 7 1.1405 -4.1848 -1.6607 11 6 0.8742 -4.6121 -3.0365 12 1 1.5875 -4.1360 -3.7093 13 6 -0.5476 -4.2062 -3.4304 14 6 1.0164 -6.1322 -3.1350 15 6 2.4692 -6.5272 -2.8626 16 1 2.7812 -6.1230 -1.8995 17 6 2.5869 -8.0525 -2.8377 18 7 3.3282 -5.9883 -3.9198 19 6 4.6524 -5.7454 -3.6688 20 1 5.0643 -5.9554 -2.6928 21 6 5.4651 -5.2294 -4.6688 22 7 4.9628 -4.9731 -5.8582 23 14 7.2714 -4.8988 -4.3267 24 1 7.5854 -5.2697 -2.9235 25 1 8.1064 -5.7077 -5.2507 26 1 7.5587 -3.4566 -4.5341 27 1 -0.3632 -0.0008 1.0277 28 1 -0.3633 0.8904 -0.5130 29 1 -0.3634 -0.8895 -0.5144 30 1 4.4098 1.3410 -0.0003 31 1 4.4776 -1.2833 0.0103 32 1 0.9299 -2.5773 0.5897 33 1 2.6167 -3.1238 0.4336 34 1 1.0084 -4.8045 -0.9262 35 1 -1.2609 -4.6823 -2.7575 36 1 -0.6488 -3.1232 -3.3602 37 1 -0.7458 -4.5245 -4.4538 38 1 0.7322 -6.4597 -4.1351 39 1 0.3668 -6.6064 -2.3992 40 1 2.2749 -8.4567 -3.8008 41 1 3.6219 -8.3339 -2.6441 42 1 1.9477 -8.4535 -2.0511 43 1 2.9582 -5.7996 -4.7964 44 1 5.5308 -4.6128 -6.5571 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146333763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:08 Heat of formation + Delta-G solvation = 29.823518 kcal Electronic energy + Delta-G solvation = -24406.821206 eV Core-core repulsion = 20974.513852 eV Total energy + Delta-G solvation = -3432.307354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.04579 -39.60760 -36.96534 -34.57671 -33.91873 -32.23449 -31.70344 -30.92503 -28.66228 -27.80076 -26.64117 -26.36461 -23.66709 -21.97470 -21.25926 -20.58238 -19.82758 -19.59272 -17.63417 -17.14228 -17.09363 -15.84766 -15.33481 -15.05908 -14.69618 -14.22299 -14.04517 -13.80852 -13.74269 -13.52030 -13.16187 -12.94698 -12.80302 -12.64695 -12.41853 -12.37349 -12.17005 -12.05122 -11.79780 -11.67307 -11.10628 -10.87248 -10.67316 -10.50763 -10.25881 -10.17487 -9.94142 -9.89320 -9.66402 -9.31639 -8.92222 -8.86682 -8.21321 -6.96014 -5.76553 -3.04986 2.04083 2.65900 2.68104 3.27232 3.36688 3.42805 3.46709 3.50727 4.52019 4.52431 4.58707 4.64689 4.80212 4.85893 5.05614 5.31629 5.32878 5.40516 5.41029 5.53603 5.57184 5.60826 5.75460 5.81046 5.86116 5.90990 5.94584 6.05646 6.22169 6.27293 6.34490 6.36571 6.49517 6.61015 6.70384 6.83762 6.86611 7.01107 7.20507 7.59336 7.68044 8.20105 8.32008 8.41693 9.53045 10.10101 10.43837 11.46173 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.005258 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.390928 B = 5323.917327 C = 6875.167071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.213 3.787 3 N -0.494 5.494 4 C -0.030 4.030 5 C -0.044 4.044 6 N -0.440 5.440 7 C 0.084 3.916 8 C 0.495 3.505 9 O -0.510 6.510 10 N -0.712 5.712 11 C 0.145 3.855 12 H 0.106 0.894 13 C -0.161 4.161 14 C -0.131 4.131 15 C 0.172 3.828 16 H 0.044 0.956 17 C -0.166 4.166 18 N -0.721 5.721 19 C -0.237 4.237 20 H 0.067 0.933 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.902 3.098 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.291 1.291 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.169 0.831 31 H 0.174 0.826 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.395 0.605 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.034 0.966 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.174 1.026 14.282 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.049 4.049 3 N -0.213 5.213 4 C -0.177 4.177 5 C -0.176 4.176 6 N -0.123 5.123 7 C -0.043 4.043 8 C 0.277 3.723 9 O -0.384 6.384 10 N -0.364 5.364 11 C 0.041 3.959 12 H 0.124 0.876 13 C -0.219 4.219 14 C -0.169 4.169 15 C 0.062 3.938 16 H 0.062 0.938 17 C -0.226 4.226 18 N -0.362 5.362 19 C -0.368 4.368 20 H 0.085 0.915 21 C -0.207 4.207 22 N -0.578 5.578 23 Si 0.733 3.267 24 H -0.207 1.207 25 H -0.219 1.219 26 H -0.218 1.218 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.186 0.814 31 H 0.191 0.809 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.228 0.772 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.188 2.303 13.656 18.448 hybrid contribution 1.425 -1.137 0.056 1.824 sum -10.763 1.166 13.712 17.471 Atomic orbital electron populations 1.20135 0.85376 1.04107 1.02829 1.23162 0.95487 0.81260 1.04966 1.70205 1.02366 1.28118 1.20658 1.22188 0.94673 0.92718 1.08118 1.22712 0.86780 0.96996 1.11094 1.44789 1.06807 1.05842 1.54850 1.21688 1.03847 0.81994 0.96775 1.20527 0.78021 0.83010 0.90704 1.90828 1.49793 1.52558 1.45239 1.45903 1.68061 1.12556 1.09899 1.21064 0.96811 0.95329 0.82724 0.87630 1.22179 0.96533 1.01645 1.01536 1.22176 0.98597 0.93667 1.02508 1.20210 0.88617 0.91656 0.93310 0.93805 1.22462 1.00934 0.99359 0.99830 1.42405 1.06810 1.76243 1.10791 1.19167 0.85647 1.35343 0.96680 0.91527 1.24704 0.98026 1.01972 0.95969 1.69653 1.34913 1.50387 1.02816 0.86202 0.85641 0.77656 0.77173 1.20718 1.21889 1.21836 0.90445 0.89216 0.91182 0.81403 0.80878 0.86506 0.86012 0.77152 0.93063 0.92598 0.91610 0.90525 0.91990 0.93500 0.92903 0.94715 0.78344 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.04 36.00 0.36 -0.33 16 2 C 0.21 3.11 7.89 -155.41 -1.23 1.88 16 3 N -0.49 -8.22 11.25 -10.82 -0.12 -8.34 16 4 C -0.03 -0.46 11.87 -17.81 -0.21 -0.67 16 5 C -0.04 -0.63 11.58 -16.56 -0.19 -0.83 16 6 N -0.44 -6.07 2.24 -115.18 -0.26 -6.33 16 7 C 0.08 0.88 6.16 -5.19 -0.03 0.85 16 8 C 0.49 7.20 7.86 -10.99 -0.09 7.11 16 9 O -0.51 -10.38 16.08 5.55 0.09 -10.29 16 10 N -0.71 -8.88 4.45 -53.81 -0.24 -9.12 16 11 C 0.14 2.15 2.52 -67.93 -0.17 1.98 16 12 H 0.11 2.17 7.05 -51.93 -0.37 1.81 16 13 C -0.16 -2.03 9.48 37.16 0.35 -1.68 16 14 C -0.13 -1.83 4.29 -26.73 -0.11 -1.95 16 15 C 0.17 3.06 2.84 -67.93 -0.19 2.87 16 16 H 0.04 0.78 7.56 -51.93 -0.39 0.39 16 17 C -0.17 -2.74 9.49 37.16 0.35 -2.39 16 18 N -0.72 -17.14 4.49 -53.43 -0.24 -17.38 16 19 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 20 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 23 Si 0.90 22.67 29.55 -169.99 -5.02 17.64 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.68 7.83 -51.93 -0.41 0.27 16 30 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.17 2.15 8.06 -52.48 -0.42 1.72 16 32 H 0.12 0.77 7.92 -51.93 -0.41 0.36 16 33 H 0.12 1.01 8.13 -51.93 -0.42 0.59 16 34 H 0.39 3.48 8.60 -40.82 -0.35 3.13 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 44 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -36.61 370.47 -8.18 -44.79 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -7.29 Total: 11.11 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.41 Total: -0.12 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -0.13 Total: -68.71 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.61 -8.18 -44.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146333763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.615 kcal (2) G-P(sol) polarization free energy of solvation -36.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds