Wall clock time and date at job start Tue Mar 31 2020 03:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30505 * 125.65289 * 2 1 4 4 C 1.34130 * 109.25664 * 180.02562 * 3 2 1 5 5 C 1.34669 * 108.01901 * 359.73846 * 4 3 2 6 6 N 1.35049 * 125.64935 * 180.02562 * 2 1 3 7 7 C 1.46500 * 126.39506 * 359.95786 * 6 2 1 8 8 C 1.50700 * 109.47165 * 85.00435 * 7 6 2 9 9 O 1.21285 * 119.99650 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00479 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00457 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46927 * 34.99720 * 11 10 8 13 13 C 1.53007 * 109.46926 * 275.00188 * 11 10 8 14 14 C 1.52997 * 109.47416 * 155.00022 * 11 10 8 15 15 C 1.52999 * 109.47080 * 295.00201 * 14 11 10 16 16 H 1.09004 * 109.47434 * 54.99895 * 15 14 11 17 17 C 1.52997 * 109.47114 * 174.99701 * 15 14 11 18 18 N 1.46498 * 109.46963 * 294.99494 * 15 14 11 19 19 C 1.36943 * 119.99752 * 154.72381 * 18 15 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 15 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 15 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 H 1.09000 * 109.46644 * 269.95631 * 1 2 3 28 28 H 1.08995 * 109.47198 * 29.94867 * 1 2 3 29 29 H 1.08995 * 109.47556 * 149.95850 * 1 2 3 30 30 H 1.07994 * 125.98524 * 180.02562 * 4 3 2 31 31 H 1.08009 * 126.58911 * 180.28460 * 5 4 3 32 32 H 1.09000 * 109.47566 * 324.99997 * 7 6 2 33 33 H 1.09001 * 109.46931 * 204.99870 * 7 6 2 34 34 H 0.97009 * 119.99372 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.46936 * 299.99527 * 13 11 10 36 36 H 1.09000 * 109.46920 * 60.00186 * 13 11 10 37 37 H 1.08997 * 109.46639 * 180.02562 * 13 11 10 38 38 H 1.08997 * 109.47302 * 174.99664 * 14 11 10 39 39 H 1.09007 * 109.46917 * 55.00199 * 14 11 10 40 40 H 1.09009 * 109.47238 * 59.99946 * 17 15 14 41 41 H 1.08997 * 109.47293 * 179.97438 * 17 15 14 42 42 H 1.09003 * 109.47189 * 300.00067 * 17 15 14 43 43 H 0.97001 * 120.00384 * 335.00737 * 18 15 14 44 44 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 -0.0006 5 6 3.5925 -0.6643 0.0049 6 7 2.2940 -1.0974 -0.0005 7 6 1.8424 -2.4910 -0.0002 8 6 1.5690 -2.9308 -1.4155 9 8 1.7346 -2.1560 -2.3339 10 7 1.1405 -4.1848 -1.6607 11 6 0.8742 -4.6121 -3.0365 12 1 1.5875 -4.1360 -3.7093 13 6 -0.5476 -4.2062 -3.4304 14 6 1.0164 -6.1322 -3.1350 15 6 2.4692 -6.5272 -2.8626 16 1 2.7812 -6.1230 -1.8995 17 6 2.5869 -8.0525 -2.8377 18 7 3.3282 -5.9883 -3.9198 19 6 4.6524 -5.7454 -3.6688 20 1 5.0643 -5.9554 -2.6928 21 6 5.4651 -5.2294 -4.6688 22 7 4.9628 -4.9731 -5.8582 23 14 7.2714 -4.8988 -4.3267 24 1 7.5854 -5.2697 -2.9235 25 1 8.1064 -5.7077 -5.2507 26 1 7.5587 -3.4566 -4.5341 27 1 -0.3632 -0.0008 1.0277 28 1 -0.3633 0.8904 -0.5130 29 1 -0.3634 -0.8895 -0.5144 30 1 4.4098 1.3410 -0.0003 31 1 4.4776 -1.2833 0.0103 32 1 0.9299 -2.5773 0.5897 33 1 2.6167 -3.1238 0.4336 34 1 1.0084 -4.8045 -0.9262 35 1 -1.2609 -4.6823 -2.7575 36 1 -0.6488 -3.1232 -3.3602 37 1 -0.7458 -4.5245 -4.4538 38 1 0.7322 -6.4597 -4.1351 39 1 0.3668 -6.6064 -2.3992 40 1 2.2749 -8.4567 -3.8008 41 1 3.6219 -8.3339 -2.6441 42 1 1.9477 -8.4535 -2.0511 43 1 2.9582 -5.7996 -4.7964 44 1 5.5308 -4.6128 -6.5571 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146333763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:08 Heat of formation + Delta-G solvation = 4.119822 kcal Electronic energy + Delta-G solvation = -24407.935802 eV Core-core repulsion = 20974.513852 eV Total energy + Delta-G solvation = -3433.421950 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.09126 -40.78357 -38.35224 -36.09544 -34.98731 -34.02499 -32.63789 -32.19580 -30.44214 -28.78046 -27.64694 -27.52212 -25.67559 -23.11969 -22.34231 -21.81564 -21.19361 -20.64967 -19.32137 -18.50219 -18.16822 -17.05817 -16.68296 -16.31123 -16.06162 -15.64753 -15.47614 -15.21389 -14.91489 -14.61139 -14.47962 -14.26510 -13.95263 -13.62632 -13.46722 -13.41227 -13.27696 -13.21294 -13.09810 -12.96915 -12.81606 -12.66375 -12.24963 -12.15841 -11.82984 -11.57271 -11.41548 -11.36954 -11.01666 -10.93879 -10.43567 -10.02550 -9.28791 -8.95855 -7.93919 -5.18907 0.97577 1.40954 1.42622 1.50875 1.57653 1.73906 2.16156 2.34563 2.54587 3.41717 3.59755 3.66318 3.77084 3.83617 3.93874 4.03147 4.10793 4.14600 4.41081 4.42531 4.54299 4.55660 4.69259 4.70402 4.80483 4.83224 4.84070 4.95634 5.00601 5.04622 5.11787 5.23090 5.29476 5.35558 5.42761 5.50717 5.63024 5.65666 5.79964 6.20755 6.29594 6.60000 7.11841 7.30761 7.35247 8.16784 8.34772 9.30294 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.005258 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.390928 B = 5323.917327 C = 6875.167071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.205 3.795 3 N -0.535 5.535 4 C -0.054 4.054 5 C -0.056 4.056 6 N -0.444 5.444 7 C 0.087 3.913 8 C 0.490 3.510 9 O -0.579 6.579 10 N -0.695 5.695 11 C 0.148 3.852 12 H 0.041 0.959 13 C -0.150 4.150 14 C -0.117 4.117 15 C 0.163 3.837 16 H 0.049 0.951 17 C -0.157 4.157 18 N -0.733 5.733 19 C -0.221 4.221 20 H 0.074 0.926 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.958 3.042 24 H -0.262 1.262 25 H -0.295 1.295 26 H -0.304 1.304 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.181 0.819 31 H 0.189 0.811 32 H 0.166 0.834 33 H 0.150 0.850 34 H 0.418 0.582 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.038 0.962 41 H 0.028 0.972 42 H 0.079 0.921 43 H 0.368 0.632 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 -1.036 17.350 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.058 4.058 3 N -0.255 5.255 4 C -0.200 4.200 5 C -0.189 4.189 6 N -0.126 5.126 7 C -0.038 4.038 8 C 0.275 3.725 9 O -0.458 6.458 10 N -0.349 5.349 11 C 0.043 3.957 12 H 0.059 0.941 13 C -0.209 4.209 14 C -0.156 4.156 15 C 0.055 3.945 16 H 0.067 0.933 17 C -0.217 4.217 18 N -0.373 5.373 19 C -0.353 4.353 20 H 0.092 0.908 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.789 3.211 24 H -0.186 1.186 25 H -0.222 1.222 26 H -0.232 1.232 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.198 0.802 31 H 0.206 0.794 32 H 0.183 0.817 33 H 0.167 0.833 34 H 0.256 0.744 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.098 0.902 43 H 0.199 0.801 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.021 0.154 16.822 21.899 hybrid contribution 1.900 -0.556 -0.842 2.151 sum -12.121 -0.402 15.980 20.061 Atomic orbital electron populations 1.20292 0.82767 1.04269 1.04900 1.23914 0.97050 0.81183 1.03621 1.70172 1.03190 1.29773 1.22393 1.22570 0.94975 0.93714 1.08752 1.23050 0.87861 0.97091 1.10895 1.44983 1.06389 1.07034 1.54242 1.22017 1.06968 0.80526 0.94312 1.21285 0.76671 0.82756 0.91795 1.90815 1.52776 1.54475 1.47689 1.45729 1.66935 1.12486 1.09703 1.20789 0.96534 0.95458 0.82882 0.94107 1.22071 0.95680 1.00664 1.02445 1.22080 0.96657 0.92993 1.03839 1.20554 0.89937 0.92382 0.91586 0.93286 1.22319 1.00469 0.97837 1.01062 1.42656 1.06513 1.76468 1.11677 1.19556 0.87113 1.32357 0.96319 0.90824 1.25434 1.01823 1.03713 0.96224 1.69809 1.35874 1.52843 1.03740 0.85272 0.81518 0.76432 0.77860 1.18578 1.22193 1.23230 0.87262 0.89748 0.90299 0.80231 0.79392 0.81670 0.83276 0.74421 0.89359 0.94512 0.91753 0.91050 0.87002 0.94272 0.95244 0.90221 0.80066 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.21 10.04 71.23 0.71 -0.50 16 2 C 0.20 5.79 7.89 138.12 1.09 6.88 16 3 N -0.53 -18.00 11.25 -188.13 -2.12 -20.12 16 4 C -0.05 -1.67 11.87 83.52 0.99 -0.68 16 5 C -0.06 -1.62 11.58 83.09 0.96 -0.65 16 6 N -0.44 -11.61 2.24 -518.33 -1.16 -12.77 16 7 C 0.09 1.54 6.16 85.63 0.53 2.07 16 8 C 0.49 13.47 7.86 87.66 0.69 14.16 16 9 O -0.58 -24.04 16.08 -3.05 -0.05 -24.09 16 10 N -0.70 -15.40 4.45 -442.53 -1.97 -17.37 16 11 C 0.15 4.22 2.52 44.99 0.11 4.33 16 12 H 0.04 1.74 7.05 -2.39 -0.02 1.72 16 13 C -0.15 -3.52 9.48 71.98 0.68 -2.83 16 14 C -0.12 -2.92 4.29 30.59 0.13 -2.79 16 15 C 0.16 5.43 2.84 44.99 0.13 5.56 16 16 H 0.05 1.59 7.56 -2.39 -0.02 1.57 16 17 C -0.16 -4.71 9.49 71.98 0.68 -4.02 16 18 N -0.73 -34.99 4.49 -322.94 -1.45 -36.44 16 19 C -0.22 -12.02 9.93 84.03 0.83 -11.19 16 20 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 21 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 22 N -0.97 -61.29 13.06 21.65 0.28 -61.01 16 23 Si 0.96 47.45 29.55 68.60 2.03 49.48 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 26 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 27 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.08 1.34 7.83 -2.39 -0.02 1.32 16 30 H 0.18 4.72 8.06 -2.91 -0.02 4.69 16 31 H 0.19 4.54 8.06 -2.91 -0.02 4.51 16 32 H 0.17 1.30 7.92 -2.39 -0.02 1.28 16 33 H 0.15 1.85 8.13 -2.39 -0.02 1.83 16 34 H 0.42 5.32 8.60 -92.70 -0.80 4.52 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.37 19.59 7.80 -92.71 -0.72 18.87 16 44 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -86.20 370.47 3.05 -83.15 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -0.53 Total: 33.06 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 8.01 Total: 6.11 kcal Atomic # 7 Polarization: -141.30 SS G_CDS: -6.41 Total: -147.71 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -86.20 3.05 -83.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146333763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.271 kcal (2) G-P(sol) polarization free energy of solvation -86.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds