Wall clock time and date at job start Tue Mar 31 2020 03:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30493 * 125.64911 * 2 1 4 4 C 1.34121 * 109.26099 * 180.02562 * 3 2 1 5 5 C 1.34676 * 108.01764 * 359.73340 * 4 3 2 6 6 N 1.35041 * 125.65238 * 180.02562 * 2 1 3 7 7 C 1.46509 * 126.39796 * 359.96715 * 6 2 1 8 8 C 1.50698 * 109.47002 * 84.99619 * 7 6 2 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99538 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 7 12 12 H 1.08999 * 109.47228 * 325.27715 * 11 10 8 13 13 C 1.52999 * 109.47341 * 85.27876 * 11 10 8 14 14 C 1.53001 * 109.47193 * 205.27836 * 11 10 8 15 15 C 1.53001 * 109.47204 * 64.99886 * 14 11 10 16 16 H 1.09007 * 109.46754 * 54.99940 * 15 14 11 17 17 C 1.53000 * 109.47029 * 174.99839 * 15 14 11 18 18 N 1.46500 * 109.47196 * 295.00319 * 15 14 11 19 19 C 1.36944 * 120.00044 * 154.99986 * 18 15 14 20 20 H 1.08006 * 119.99457 * 359.97438 * 19 18 15 21 21 C 1.38803 * 119.99791 * 180.02562 * 19 18 15 22 22 N 1.31621 * 120.00397 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99880 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47352 * 59.99504 * 23 21 19 25 25 H 1.48501 * 109.47231 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46938 * 299.99440 * 23 21 19 27 27 H 1.09001 * 109.46771 * 269.95425 * 1 2 3 28 28 H 1.08996 * 109.47172 * 29.96233 * 1 2 3 29 29 H 1.09000 * 109.46597 * 149.96002 * 1 2 3 30 30 H 1.07997 * 125.99862 * 180.02562 * 4 3 2 31 31 H 1.08002 * 126.59522 * 180.28644 * 5 4 3 32 32 H 1.09003 * 109.46564 * 325.00047 * 7 6 2 33 33 H 1.08993 * 109.46901 * 205.00383 * 7 6 2 34 34 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47098 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.46823 * 300.00095 * 13 11 10 37 37 H 1.08999 * 109.47091 * 59.99755 * 13 11 10 38 38 H 1.08996 * 109.47384 * 185.00021 * 14 11 10 39 39 H 1.08994 * 109.47052 * 305.00248 * 14 11 10 40 40 H 1.09002 * 109.46832 * 180.02562 * 17 15 14 41 41 H 1.08999 * 109.47542 * 300.00109 * 17 15 14 42 42 H 1.08997 * 109.46762 * 60.00530 * 17 15 14 43 43 H 0.96998 * 119.99715 * 334.99395 * 18 15 14 44 44 H 0.96998 * 120.00245 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6820 -0.0006 5 6 3.5926 -0.6642 0.0050 6 7 2.2942 -1.0973 -0.0005 7 6 1.8427 -2.4911 -0.0004 8 6 1.5693 -2.9306 -1.4158 9 8 1.7357 -2.1561 -2.3342 10 7 1.1409 -4.1847 -1.6610 11 6 0.8694 -4.6101 -3.0363 12 1 0.4670 -3.7708 -3.6035 13 6 2.1681 -5.0899 -3.6876 14 6 -0.1481 -5.7528 -3.0253 15 6 -1.4858 -5.2393 -2.4889 16 1 -1.8058 -4.3779 -3.0753 17 6 -2.5363 -6.3467 -2.5941 18 7 -1.3307 -4.8449 -1.0865 19 6 -2.1746 -3.9157 -0.5392 20 1 -2.9543 -3.4733 -1.1416 21 6 -2.0272 -3.5416 0.7893 22 7 -1.0767 -4.0804 1.5232 23 14 -3.1788 -2.2746 1.5362 24 1 -4.5772 -2.7680 1.4553 25 1 -2.8145 -2.0519 2.9584 26 1 -3.0607 -0.9968 0.7886 27 1 -0.3633 -0.0008 1.0277 28 1 -0.3633 0.8903 -0.5132 29 1 -0.3632 -0.8897 -0.5145 30 1 4.4098 1.3411 -0.0003 31 1 4.4777 -1.2831 0.0105 32 1 0.9301 -2.5773 0.5895 33 1 2.6169 -3.1237 0.4335 34 1 1.0081 -4.8043 -0.9266 35 1 1.9661 -5.4060 -4.7109 36 1 2.8929 -4.2759 -3.6954 37 1 2.5704 -5.9292 -3.1203 38 1 -0.2834 -6.1286 -4.0394 39 1 0.2154 -6.5567 -2.3854 40 1 -3.4894 -5.9808 -2.2124 41 1 -2.6517 -6.6401 -3.6375 42 1 -2.2162 -7.2080 -2.0077 43 1 -0.6302 -5.2421 -0.5457 44 1 -0.9740 -3.8193 2.4517 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146333764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:10 Heat of formation + Delta-G solvation = 34.063889 kcal Electronic energy + Delta-G solvation = -25380.057526 eV Core-core repulsion = 21947.934048 eV Total energy + Delta-G solvation = -3432.123478 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70927 -39.35210 -36.93990 -34.35988 -33.49181 -32.39581 -31.24816 -30.81473 -28.72026 -27.36148 -26.43279 -26.19769 -23.79247 -21.78417 -20.93926 -20.38337 -19.97747 -19.13116 -17.33643 -17.00423 -16.74539 -15.70187 -14.98427 -14.89892 -14.67144 -14.03997 -13.88575 -13.79078 -13.36240 -13.25809 -12.96782 -12.85086 -12.57455 -12.28959 -12.16436 -12.04809 -11.87325 -11.78941 -11.76878 -11.68665 -11.08653 -10.90097 -10.83484 -10.47534 -10.37034 -10.03496 -9.87091 -9.78550 -9.59105 -9.09261 -8.97450 -8.53170 -7.91028 -7.09640 -5.95531 -3.21657 2.39407 3.03772 3.07864 3.33596 3.39676 3.42711 3.55904 3.80002 4.46475 4.95149 4.95664 5.06065 5.14607 5.19292 5.32094 5.40932 5.42003 5.57668 5.67278 5.72499 5.78336 5.85901 5.89278 5.91377 6.04019 6.04944 6.14964 6.21462 6.26126 6.31449 6.41357 6.44918 6.50399 6.73980 6.76000 6.94545 7.02020 7.15237 7.54809 7.57152 7.98675 8.24226 8.52323 8.67873 9.36104 9.89606 10.25894 11.26630 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.007612 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.980080 B = 3677.335032 C = 5514.359840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.231 3.769 3 N -0.503 5.503 4 C -0.034 4.034 5 C -0.060 4.060 6 N -0.432 5.432 7 C 0.078 3.922 8 C 0.514 3.486 9 O -0.546 6.546 10 N -0.692 5.692 11 C 0.151 3.849 12 H 0.083 0.917 13 C -0.162 4.162 14 C -0.133 4.133 15 C 0.169 3.831 16 H 0.048 0.952 17 C -0.163 4.163 18 N -0.717 5.717 19 C -0.224 4.224 20 H 0.068 0.932 21 C -0.011 4.011 22 N -0.939 5.939 23 Si 0.892 3.108 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.111 0.889 34 H 0.406 0.594 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.045 0.955 43 H 0.377 0.623 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 -3.149 -4.849 8.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.031 4.031 3 N -0.223 5.223 4 C -0.182 4.182 5 C -0.193 4.193 6 N -0.114 5.114 7 C -0.048 4.048 8 C 0.298 3.702 9 O -0.423 6.423 10 N -0.345 5.345 11 C 0.046 3.954 12 H 0.101 0.899 13 C -0.220 4.220 14 C -0.172 4.172 15 C 0.059 3.941 16 H 0.066 0.934 17 C -0.224 4.224 18 N -0.360 5.360 19 C -0.355 4.355 20 H 0.086 0.914 21 C -0.206 4.206 22 N -0.589 5.589 23 Si 0.723 3.277 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.208 1.208 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.181 0.819 31 H 0.184 0.816 32 H 0.165 0.835 33 H 0.129 0.871 34 H 0.244 0.756 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.212 0.788 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.483 -1.819 -5.466 8.672 hybrid contribution -0.195 -0.793 1.070 1.346 sum 6.287 -2.612 -4.396 8.104 Atomic orbital electron populations 1.20230 0.84894 1.04524 1.03331 1.23247 0.95648 0.81054 1.03196 1.70213 1.02139 1.28293 1.21614 1.22107 0.94786 0.92577 1.08694 1.22531 0.86954 0.96810 1.13000 1.44884 1.06369 1.06519 1.53624 1.21882 1.05344 0.80382 0.97220 1.20385 0.77022 0.82359 0.90418 1.90704 1.52958 1.52909 1.45775 1.45891 1.66299 1.13094 1.09230 1.20818 0.94127 0.97382 0.83044 0.89899 1.22200 0.98272 1.01191 1.00384 1.22208 0.96205 0.97198 1.01577 1.20298 0.91449 0.94796 0.87557 0.93350 1.22412 1.01112 0.99980 0.98855 1.42472 1.38358 1.49054 1.06138 1.19202 1.08668 1.13831 0.93811 0.91428 1.24550 0.99119 1.00521 0.96419 1.69566 1.34502 1.46810 1.07976 0.86503 0.80842 0.81892 0.78501 1.21500 1.21626 1.20753 0.90542 0.89747 0.89727 0.81868 0.81565 0.83457 0.87099 0.75609 0.92031 0.92524 0.92752 0.90731 0.91661 0.92842 0.94551 0.93581 0.78774 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.04 36.01 0.36 -0.97 16 2 C 0.23 4.55 7.89 -155.42 -1.23 3.32 16 3 N -0.50 -10.01 11.25 -10.82 -0.12 -10.13 16 4 C -0.03 -0.57 11.87 -17.81 -0.21 -0.78 16 5 C -0.06 -0.97 11.58 -16.56 -0.19 -1.16 16 6 N -0.43 -7.79 2.24 -115.18 -0.26 -8.05 16 7 C 0.08 1.31 6.16 -5.19 -0.03 1.28 16 8 C 0.51 9.30 7.87 -10.99 -0.09 9.21 16 9 O -0.55 -11.67 16.08 5.55 0.09 -11.58 16 10 N -0.69 -11.08 3.80 -53.81 -0.20 -11.28 16 11 C 0.15 2.23 2.58 -67.93 -0.17 2.05 16 12 H 0.08 1.43 7.57 -51.93 -0.39 1.04 16 13 C -0.16 -2.02 9.49 37.16 0.35 -1.67 16 14 C -0.13 -1.81 4.43 -26.73 -0.12 -1.93 16 15 C 0.17 2.87 2.89 -67.93 -0.20 2.68 16 16 H 0.05 0.90 8.08 -51.92 -0.42 0.48 16 17 C -0.16 -2.61 9.49 37.16 0.35 -2.26 16 18 N -0.72 -14.62 3.84 -53.42 -0.21 -14.82 16 19 C -0.22 -5.32 9.93 -15.06 -0.15 -5.47 16 20 H 0.07 1.66 7.83 -52.48 -0.41 1.24 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 22 N -0.94 -22.94 12.74 55.49 0.71 -22.23 16 23 Si 0.89 20.27 29.55 -169.99 -5.02 15.25 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.08 1.71 7.83 -51.93 -0.41 1.30 16 30 H 0.16 2.22 8.06 -52.49 -0.42 1.79 16 31 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.15 2.79 7.60 -51.93 -0.39 2.40 16 33 H 0.11 1.52 8.13 -51.93 -0.42 1.10 16 34 H 0.41 6.44 6.51 -40.82 -0.27 6.18 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.38 7.82 5.70 -40.82 -0.23 7.59 16 44 H 0.26 6.32 8.31 -40.82 -0.34 5.98 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -28.60 365.64 -8.08 -36.68 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -7.15 Total: 16.73 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.42 Total: 3.94 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -0.08 Total: -66.52 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.60 -8.08 -36.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146333764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.741 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds