Wall clock time and date at job start Tue Mar 31 2020 03:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30493 * 125.64911 * 2 1 4 4 C 1.34121 * 109.26099 * 180.02562 * 3 2 1 5 5 C 1.34676 * 108.01764 * 359.73340 * 4 3 2 6 6 N 1.35041 * 125.65238 * 180.02562 * 2 1 3 7 7 C 1.46509 * 126.39796 * 359.96715 * 6 2 1 8 8 C 1.50698 * 109.47002 * 84.99619 * 7 6 2 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99538 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 7 12 12 H 1.08999 * 109.47228 * 325.27715 * 11 10 8 13 13 C 1.52999 * 109.47341 * 85.27876 * 11 10 8 14 14 C 1.53001 * 109.47193 * 205.27836 * 11 10 8 15 15 C 1.53001 * 109.47204 * 64.99886 * 14 11 10 16 16 H 1.09007 * 109.46754 * 54.99940 * 15 14 11 17 17 C 1.53000 * 109.47029 * 174.99839 * 15 14 11 18 18 N 1.46500 * 109.47196 * 295.00319 * 15 14 11 19 19 C 1.36944 * 120.00044 * 154.99986 * 18 15 14 20 20 H 1.08006 * 119.99457 * 359.97438 * 19 18 15 21 21 C 1.38803 * 119.99791 * 180.02562 * 19 18 15 22 22 N 1.31621 * 120.00397 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99880 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47352 * 59.99504 * 23 21 19 25 25 H 1.48501 * 109.47231 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46938 * 299.99440 * 23 21 19 27 27 H 1.09001 * 109.46771 * 269.95425 * 1 2 3 28 28 H 1.08996 * 109.47172 * 29.96233 * 1 2 3 29 29 H 1.09000 * 109.46597 * 149.96002 * 1 2 3 30 30 H 1.07997 * 125.99862 * 180.02562 * 4 3 2 31 31 H 1.08002 * 126.59522 * 180.28644 * 5 4 3 32 32 H 1.09003 * 109.46564 * 325.00047 * 7 6 2 33 33 H 1.08993 * 109.46901 * 205.00383 * 7 6 2 34 34 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47098 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.46823 * 300.00095 * 13 11 10 37 37 H 1.08999 * 109.47091 * 59.99755 * 13 11 10 38 38 H 1.08996 * 109.47384 * 185.00021 * 14 11 10 39 39 H 1.08994 * 109.47052 * 305.00248 * 14 11 10 40 40 H 1.09002 * 109.46832 * 180.02562 * 17 15 14 41 41 H 1.08999 * 109.47542 * 300.00109 * 17 15 14 42 42 H 1.08997 * 109.46762 * 60.00530 * 17 15 14 43 43 H 0.96998 * 119.99715 * 334.99395 * 18 15 14 44 44 H 0.96998 * 120.00245 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6820 -0.0006 5 6 3.5926 -0.6642 0.0050 6 7 2.2942 -1.0973 -0.0005 7 6 1.8427 -2.4911 -0.0004 8 6 1.5693 -2.9306 -1.4158 9 8 1.7357 -2.1561 -2.3342 10 7 1.1409 -4.1847 -1.6610 11 6 0.8694 -4.6101 -3.0363 12 1 0.4670 -3.7708 -3.6035 13 6 2.1681 -5.0899 -3.6876 14 6 -0.1481 -5.7528 -3.0253 15 6 -1.4858 -5.2393 -2.4889 16 1 -1.8058 -4.3779 -3.0753 17 6 -2.5363 -6.3467 -2.5941 18 7 -1.3307 -4.8449 -1.0865 19 6 -2.1746 -3.9157 -0.5392 20 1 -2.9543 -3.4733 -1.1416 21 6 -2.0272 -3.5416 0.7893 22 7 -1.0767 -4.0804 1.5232 23 14 -3.1788 -2.2746 1.5362 24 1 -4.5772 -2.7680 1.4553 25 1 -2.8145 -2.0519 2.9584 26 1 -3.0607 -0.9968 0.7886 27 1 -0.3633 -0.0008 1.0277 28 1 -0.3633 0.8903 -0.5132 29 1 -0.3632 -0.8897 -0.5145 30 1 4.4098 1.3411 -0.0003 31 1 4.4777 -1.2831 0.0105 32 1 0.9301 -2.5773 0.5895 33 1 2.6169 -3.1237 0.4335 34 1 1.0081 -4.8043 -0.9266 35 1 1.9661 -5.4060 -4.7109 36 1 2.8929 -4.2759 -3.6954 37 1 2.5704 -5.9292 -3.1203 38 1 -0.2834 -6.1286 -4.0394 39 1 0.2154 -6.5567 -2.3854 40 1 -3.4894 -5.9808 -2.2124 41 1 -2.6517 -6.6401 -3.6375 42 1 -2.2162 -7.2080 -2.0077 43 1 -0.6302 -5.2421 -0.5457 44 1 -0.9740 -3.8193 2.4517 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146333764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:09 Heat of formation + Delta-G solvation = 18.126137 kcal Electronic energy + Delta-G solvation = -25380.748639 eV Core-core repulsion = 21947.934048 eV Total energy + Delta-G solvation = -3432.814591 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.07352 -40.73561 -38.35131 -35.85104 -34.90251 -34.01670 -32.66608 -32.18937 -30.29266 -28.70298 -27.65916 -27.52174 -25.55269 -23.08321 -22.26028 -21.71681 -21.37706 -20.54307 -19.09699 -18.38307 -18.10861 -17.04136 -16.53966 -16.36831 -16.07353 -15.56216 -15.41990 -15.22966 -14.70962 -14.63823 -14.30230 -14.22058 -13.92214 -13.60607 -13.58841 -13.39904 -13.30938 -13.28177 -13.02102 -12.85346 -12.72092 -12.59628 -12.28364 -12.16417 -11.72357 -11.59119 -11.41654 -11.30066 -11.00100 -10.86053 -10.39788 -9.89928 -9.24886 -8.81750 -7.84923 -5.06529 1.03658 1.47787 1.53185 1.54971 1.64210 1.74306 2.18352 2.49081 2.61802 3.48646 3.57164 3.69282 3.80284 3.88239 3.92198 4.07751 4.18039 4.34587 4.38233 4.40779 4.53590 4.56363 4.58307 4.68864 4.83369 4.83695 4.88422 4.90315 4.92427 5.08234 5.14194 5.16774 5.35586 5.39519 5.42694 5.62653 5.63605 5.73227 5.88241 6.15733 6.38033 6.63949 7.14261 7.30793 7.48276 8.18423 8.47808 9.35585 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.007612 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.980080 B = 3677.335032 C = 5514.359840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.199 3.801 3 N -0.527 5.527 4 C -0.051 4.051 5 C -0.052 4.052 6 N -0.436 5.436 7 C 0.083 3.917 8 C 0.512 3.488 9 O -0.584 6.584 10 N -0.683 5.683 11 C 0.148 3.852 12 H 0.053 0.947 13 C -0.151 4.151 14 C -0.119 4.119 15 C 0.162 3.838 16 H 0.028 0.972 17 C -0.154 4.154 18 N -0.718 5.718 19 C -0.223 4.223 20 H 0.054 0.946 21 C -0.041 4.041 22 N -0.942 5.942 23 Si 0.923 3.077 24 H -0.296 1.296 25 H -0.297 1.297 26 H -0.281 1.281 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.194 0.806 31 H 0.206 0.794 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.409 0.591 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.377 0.623 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -4.863 -5.578 11.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 N -0.248 5.248 4 C -0.198 4.198 5 C -0.185 4.185 6 N -0.117 5.117 7 C -0.043 4.043 8 C 0.297 3.703 9 O -0.464 6.464 10 N -0.335 5.335 11 C 0.044 3.956 12 H 0.071 0.929 13 C -0.209 4.209 14 C -0.157 4.157 15 C 0.054 3.946 16 H 0.046 0.954 17 C -0.214 4.214 18 N -0.362 5.362 19 C -0.355 4.355 20 H 0.072 0.928 21 C -0.235 4.235 22 N -0.593 5.593 23 Si 0.755 3.245 24 H -0.223 1.223 25 H -0.223 1.223 26 H -0.207 1.207 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.211 0.789 31 H 0.223 0.777 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.247 0.753 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.211 0.789 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.987 -3.570 -6.217 10.733 hybrid contribution -0.676 -0.275 1.233 1.433 sum 7.311 -3.845 -4.984 9.647 Atomic orbital electron populations 1.20092 0.85247 1.03640 1.03104 1.23313 0.95935 0.81930 1.05172 1.70164 1.03641 1.28916 1.22054 1.22717 0.94596 0.93732 1.08722 1.23228 0.87225 0.97183 1.10841 1.45009 1.06988 1.06510 1.53213 1.21877 1.05641 0.80511 0.96270 1.20585 0.76682 0.82534 0.90476 1.90683 1.54877 1.53954 1.46930 1.45915 1.65068 1.12466 1.10016 1.20930 0.95825 0.96812 0.82057 0.92888 1.22093 0.96145 1.00965 1.01713 1.22119 0.93408 0.96739 1.03466 1.20480 0.94021 0.94647 0.85498 0.95392 1.22275 0.99156 0.99227 1.00771 1.42493 1.37711 1.48425 1.07523 1.19242 1.08520 1.14028 0.93708 0.92809 1.24816 1.00116 1.01684 0.96895 1.69609 1.34917 1.47267 1.07550 0.85997 0.79602 0.81209 0.77642 1.22339 1.22330 1.20693 0.90433 0.89179 0.91916 0.78876 0.77691 0.85560 0.83640 0.75324 0.89825 0.94441 0.90929 0.87563 0.90171 0.95336 0.91490 0.93226 0.78860 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.42 10.04 71.24 0.72 -1.70 16 2 C 0.20 7.91 7.89 138.13 1.09 9.00 16 3 N -0.53 -20.91 11.25 -188.13 -2.12 -23.03 16 4 C -0.05 -1.65 11.87 83.53 0.99 -0.66 16 5 C -0.05 -1.58 11.58 83.09 0.96 -0.62 16 6 N -0.44 -15.43 2.24 -518.32 -1.16 -16.59 16 7 C 0.08 2.74 6.16 85.63 0.53 3.27 16 8 C 0.51 18.38 7.87 87.66 0.69 19.07 16 9 O -0.58 -25.19 16.08 -3.04 -0.05 -25.24 16 10 N -0.68 -21.17 3.80 -442.54 -1.68 -22.85 16 11 C 0.15 4.13 2.58 44.99 0.12 4.24 16 12 H 0.05 1.82 7.57 -2.39 -0.02 1.80 16 13 C -0.15 -3.35 9.49 71.98 0.68 -2.66 16 14 C -0.12 -2.89 4.43 30.60 0.14 -2.75 16 15 C 0.16 5.31 2.89 44.99 0.13 5.44 16 16 H 0.03 1.04 8.08 -2.38 -0.02 1.02 16 17 C -0.15 -4.62 9.49 71.98 0.68 -3.94 16 18 N -0.72 -28.95 3.84 -322.93 -1.24 -30.20 16 19 C -0.22 -10.69 9.93 84.03 0.83 -9.85 16 20 H 0.05 2.70 7.83 -2.91 -0.02 2.68 16 21 C -0.04 -2.02 5.50 84.86 0.47 -1.55 16 22 N -0.94 -46.07 12.74 21.65 0.28 -45.79 16 23 Si 0.92 42.17 29.55 68.60 2.03 44.20 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 27 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 29 H 0.06 2.66 7.83 -2.39 -0.02 2.64 16 30 H 0.19 4.80 8.06 -2.91 -0.02 4.78 16 31 H 0.21 4.38 8.06 -2.91 -0.02 4.36 16 32 H 0.13 4.82 7.60 -2.39 -0.02 4.80 16 33 H 0.15 3.67 8.13 -2.39 -0.02 3.65 16 34 H 0.41 12.38 6.51 -92.71 -0.60 11.77 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.11 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.38 15.24 5.70 -92.71 -0.53 14.72 16 44 H 0.25 12.36 8.31 -92.71 -0.77 11.59 16 Total: -1.00 -62.91 365.64 3.94 -58.98 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -0.14 Total: 43.24 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 8.02 Total: 17.28 kcal Atomic # 7 Polarization: -132.53 SS G_CDS: -5.93 Total: -138.46 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.05 Total: -25.24 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -62.91 3.94 -58.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146333764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.104 kcal (2) G-P(sol) polarization free energy of solvation -62.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds