Wall clock time and date at job start Tue Mar 31 2020 03:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20752 * 119.99963 * 2 1 4 4 C 1.50697 * 119.99806 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47140 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47118 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46921 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99841 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99805 * 179.97438 * 7 6 5 10 10 C 1.47885 * 134.33936 * 179.97438 * 9 7 6 11 11 C 1.52368 * 85.58964 * 156.48622 * 10 9 7 12 12 C 1.47887 * 134.34262 * 359.96292 * 9 7 6 13 13 C 1.53658 * 116.39717 * 141.35074 * 11 10 9 14 14 C 1.54607 * 102.73022 * 162.91744 * 13 11 10 15 15 N 1.47137 * 107.36428 * 339.24245 * 14 13 11 16 16 C 1.36938 * 125.58257 * 179.11256 * 15 14 13 17 17 H 1.08002 * 119.99870 * 179.97438 * 16 15 14 18 18 C 1.38812 * 120.00021 * 359.97336 * 16 15 14 19 19 N 1.31613 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99551 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47712 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46939 * 120.00343 * 20 18 16 23 23 H 1.48505 * 109.47084 * 239.99765 * 20 18 16 24 24 C 1.47725 * 108.82669 * 359.07915 * 15 14 13 25 25 H 1.08995 * 109.47405 * 240.00121 * 1 2 3 26 26 H 1.08994 * 109.47033 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46621 * 120.00249 * 1 2 3 28 28 H 1.09002 * 109.47501 * 60.00154 * 4 2 1 29 29 H 1.09007 * 109.47066 * 300.00320 * 4 2 1 30 30 H 1.08996 * 109.46716 * 59.99999 * 5 4 2 31 31 H 1.09004 * 109.46773 * 300.00350 * 5 4 2 32 32 H 1.08998 * 109.47032 * 59.99699 * 6 5 4 33 33 H 1.09007 * 109.46850 * 299.99720 * 6 5 4 34 34 H 1.09005 * 113.85578 * 42.32235 * 10 9 7 35 35 H 1.09009 * 113.97216 * 270.66636 * 10 9 7 36 36 H 1.08995 * 113.85518 * 89.34905 * 12 9 7 37 37 H 1.09002 * 113.85341 * 317.67535 * 12 9 7 38 38 H 1.08993 * 110.76200 * 44.60660 * 13 11 10 39 39 H 1.09003 * 110.75888 * 281.22670 * 13 11 10 40 40 H 1.08997 * 109.86564 * 98.69116 * 14 13 11 41 41 H 1.09000 * 109.86527 * 219.65895 * 14 13 11 42 42 H 0.97004 * 119.99629 * 179.97438 * 19 18 16 43 43 H 1.08994 * 110.39981 * 141.25248 * 24 15 14 44 44 H 1.09000 * 110.39188 * 263.54275 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0256 0.0011 6 6 4.5297 -2.3506 0.0011 7 6 6.0114 -2.0752 0.0009 8 8 6.4156 -0.9317 0.0014 9 7 6.8871 -3.0997 0.0014 10 6 8.3627 -3.1980 0.0010 11 6 8.1534 -4.5797 0.6082 12 6 6.7549 -4.5726 0.0027 13 6 9.1008 -5.6889 0.1251 14 6 8.9318 -6.7775 1.2098 15 7 8.3927 -6.1207 2.4110 16 6 8.0848 -6.7450 3.5903 17 1 7.6928 -6.1726 4.4180 18 6 8.2764 -8.1135 3.7217 19 7 8.7545 -8.8110 2.7132 20 14 7.8556 -8.9652 5.3302 21 1 7.3384 -7.9658 6.2990 22 1 6.8188 -9.9998 5.0859 23 1 9.0748 -9.6073 5.8840 24 6 8.2389 -4.6773 2.1366 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3632 -0.5139 -0.8900 28 1 1.9972 -1.8771 -0.8892 29 1 1.9971 -1.8763 0.8908 30 1 4.0277 -0.4538 0.8910 31 1 4.0284 -0.4541 -0.8889 32 1 4.2666 -2.9220 -0.8891 33 1 4.2661 -2.9223 0.8909 34 1 8.8518 -2.4914 0.6715 35 1 8.8051 -3.2166 -0.9952 36 1 6.7037 -5.0115 -0.9936 37 1 5.9817 -4.9452 0.6747 38 1 10.1299 -5.3313 0.0936 39 1 8.7910 -6.0640 -0.8503 40 1 8.2370 -7.5420 0.8622 41 1 9.8979 -7.2297 1.4344 42 1 8.8887 -9.7673 2.8053 43 1 7.3243 -4.2992 2.5933 44 1 9.1034 -4.1261 2.5066 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146992184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:10 Heat of formation + Delta-G solvation = -22.584661 kcal Electronic energy + Delta-G solvation = -23503.376269 eV Core-core repulsion = 20036.503574 eV Total energy + Delta-G solvation = -3466.872694 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53545 -39.72108 -38.34402 -35.60764 -34.38331 -32.25871 -31.07665 -29.84616 -28.82424 -27.57535 -26.14630 -25.70749 -23.73824 -22.15773 -20.31309 -19.86226 -19.08811 -18.24747 -17.06151 -16.64691 -16.32556 -16.17028 -15.49481 -15.43215 -15.06892 -14.71682 -14.48942 -14.25680 -13.77687 -13.43117 -12.98721 -12.83923 -12.56823 -12.47613 -12.34466 -12.04748 -11.96934 -11.87553 -11.80926 -11.57648 -11.10177 -10.95427 -10.92529 -10.80178 -10.41583 -10.23400 -10.09055 -9.91775 -9.88337 -9.70201 -9.41552 -8.63948 -8.50810 -6.87654 -5.75413 -3.08824 1.71642 2.77655 2.93137 3.36847 3.43127 3.45135 3.77380 4.38134 4.46425 4.65601 4.70537 4.76290 4.87487 4.94336 4.98728 5.03873 5.18714 5.25365 5.28811 5.38629 5.45528 5.46886 5.52492 5.66088 5.69972 5.72690 5.73969 5.82638 5.96014 6.00087 6.15453 6.20513 6.21482 6.44576 6.50539 6.65190 6.70309 7.26630 7.52314 7.57312 7.78896 7.87565 8.21119 8.30242 9.18229 9.77859 10.43485 11.36248 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.003110 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.381939 B = 9002.414556 C =10108.419420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.350 3.650 3 O -0.454 6.454 4 C -0.174 4.174 5 C -0.096 4.096 6 C -0.135 4.135 7 C 0.532 3.468 8 O -0.549 6.549 9 N -0.642 5.642 10 C 0.120 3.880 11 C -0.104 4.104 12 C 0.122 3.878 13 C -0.132 4.132 14 C 0.179 3.821 15 N -0.605 5.605 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.162 3.838 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.252 0.748 43 H 0.039 0.961 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.248 9.627 -9.027 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.226 3.774 3 O -0.328 6.328 4 C -0.211 4.211 5 C -0.134 4.134 6 C -0.175 4.175 7 C 0.322 3.678 8 O -0.428 6.428 9 N -0.378 5.378 10 C -0.002 4.002 11 C -0.106 4.106 12 C 0.000 4.000 13 C -0.171 4.171 14 C 0.054 3.946 15 N -0.332 5.332 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.036 3.964 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.860 10.748 -8.922 18.324 hybrid contribution -0.278 -0.819 0.773 1.160 sum -12.138 9.929 -8.149 17.673 Atomic orbital electron populations 1.22335 0.94588 1.04856 1.04518 1.24650 0.91904 0.90440 0.70440 1.90446 1.72015 1.35185 1.35108 1.22175 0.96619 0.97496 1.04854 1.21147 0.91548 0.96001 1.04700 1.21616 0.91677 0.99750 1.04464 1.20331 0.88055 0.83796 0.75646 1.90699 1.80279 1.20861 1.50918 1.50284 1.07747 1.06896 1.72825 1.22973 0.80693 0.96020 1.00519 1.22461 0.95186 0.94241 0.98679 1.23050 0.98327 0.78123 1.00548 1.22680 0.97926 0.96620 0.99854 1.21201 0.98789 0.91011 0.83603 1.44575 1.75742 1.01090 1.11771 1.19089 1.36289 0.90678 0.89439 0.90455 1.24787 1.01437 0.96322 0.97875 1.69967 1.50771 1.06499 1.29706 0.86056 0.77580 0.79475 0.82724 1.20528 1.21768 1.21759 1.21031 0.98259 0.87794 0.89332 0.88962 0.90185 0.89041 0.88299 0.88146 0.90614 0.90782 0.89078 0.88750 0.90162 0.89908 0.89738 0.89503 0.91735 0.91748 0.93481 0.93852 0.93805 0.94266 0.95771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.07 10.26 36.01 0.37 -0.70 16 2 C 0.35 3.07 7.27 -29.03 -0.21 2.86 16 3 O -0.45 -6.11 16.71 6.01 0.10 -6.01 16 4 C -0.17 -1.27 5.64 -27.88 -0.16 -1.42 16 5 C -0.10 -1.07 3.79 -26.73 -0.10 -1.17 16 6 C -0.14 -1.46 5.44 -27.88 -0.15 -1.62 16 7 C 0.53 8.08 8.06 -10.99 -0.09 7.99 16 8 O -0.55 -10.44 16.71 5.55 0.09 -10.35 16 9 N -0.64 -9.35 3.62 -186.92 -0.68 -10.02 16 10 C 0.12 1.72 8.21 -3.60 -0.03 1.69 16 11 C -0.10 -1.65 0.99 -154.84 -0.15 -1.80 16 12 C 0.12 1.67 7.92 -3.59 -0.03 1.65 16 13 C -0.13 -2.19 6.36 -25.55 -0.16 -2.35 16 14 C 0.18 4.04 5.39 -2.85 -0.02 4.03 16 15 N -0.61 -14.68 3.41 -170.50 -0.58 -15.26 16 16 C -0.23 -6.11 10.28 -15.06 -0.15 -6.26 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -26.16 10.30 55.49 0.57 -25.59 16 20 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.16 3.21 6.63 -3.17 -0.02 3.19 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.47 8.12 -51.93 -0.42 0.04 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.19 8.12 -51.93 -0.42 0.77 16 35 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 36 H 0.08 0.99 8.04 -51.93 -0.42 0.58 16 37 H 0.09 1.23 8.12 -51.93 -0.42 0.81 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 40 H 0.05 1.17 7.39 -51.93 -0.38 0.79 16 41 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 42 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -33.97 362.20 -8.53 -42.50 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.48 Total: -3.01 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.00 Total: 5.76 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.69 Total: -50.88 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.19 Total: -16.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.97 -8.53 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146992184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.915 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds