Wall clock time and date at job start Tue Mar 31 2020 03:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20752 * 119.99963 * 2 1 4 4 C 1.50697 * 119.99806 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47140 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47118 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46921 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99841 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99805 * 179.97438 * 7 6 5 10 10 C 1.47885 * 134.33936 * 179.97438 * 9 7 6 11 11 C 1.52368 * 85.58964 * 156.48622 * 10 9 7 12 12 C 1.47887 * 134.34262 * 359.96292 * 9 7 6 13 13 C 1.53658 * 116.39717 * 141.35074 * 11 10 9 14 14 C 1.54607 * 102.73022 * 162.91744 * 13 11 10 15 15 N 1.47137 * 107.36428 * 339.24245 * 14 13 11 16 16 C 1.36938 * 125.58257 * 179.11256 * 15 14 13 17 17 H 1.08002 * 119.99870 * 179.97438 * 16 15 14 18 18 C 1.38812 * 120.00021 * 359.97336 * 16 15 14 19 19 N 1.31613 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99551 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47712 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46939 * 120.00343 * 20 18 16 23 23 H 1.48505 * 109.47084 * 239.99765 * 20 18 16 24 24 C 1.47725 * 108.82669 * 359.07915 * 15 14 13 25 25 H 1.08995 * 109.47405 * 240.00121 * 1 2 3 26 26 H 1.08994 * 109.47033 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46621 * 120.00249 * 1 2 3 28 28 H 1.09002 * 109.47501 * 60.00154 * 4 2 1 29 29 H 1.09007 * 109.47066 * 300.00320 * 4 2 1 30 30 H 1.08996 * 109.46716 * 59.99999 * 5 4 2 31 31 H 1.09004 * 109.46773 * 300.00350 * 5 4 2 32 32 H 1.08998 * 109.47032 * 59.99699 * 6 5 4 33 33 H 1.09007 * 109.46850 * 299.99720 * 6 5 4 34 34 H 1.09005 * 113.85578 * 42.32235 * 10 9 7 35 35 H 1.09009 * 113.97216 * 270.66636 * 10 9 7 36 36 H 1.08995 * 113.85518 * 89.34905 * 12 9 7 37 37 H 1.09002 * 113.85341 * 317.67535 * 12 9 7 38 38 H 1.08993 * 110.76200 * 44.60660 * 13 11 10 39 39 H 1.09003 * 110.75888 * 281.22670 * 13 11 10 40 40 H 1.08997 * 109.86564 * 98.69116 * 14 13 11 41 41 H 1.09000 * 109.86527 * 219.65895 * 14 13 11 42 42 H 0.97004 * 119.99629 * 179.97438 * 19 18 16 43 43 H 1.08994 * 110.39981 * 141.25248 * 24 15 14 44 44 H 1.09000 * 110.39188 * 263.54275 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0256 0.0011 6 6 4.5297 -2.3506 0.0011 7 6 6.0114 -2.0752 0.0009 8 8 6.4156 -0.9317 0.0014 9 7 6.8871 -3.0997 0.0014 10 6 8.3627 -3.1980 0.0010 11 6 8.1534 -4.5797 0.6082 12 6 6.7549 -4.5726 0.0027 13 6 9.1008 -5.6889 0.1251 14 6 8.9318 -6.7775 1.2098 15 7 8.3927 -6.1207 2.4110 16 6 8.0848 -6.7450 3.5903 17 1 7.6928 -6.1726 4.4180 18 6 8.2764 -8.1135 3.7217 19 7 8.7545 -8.8110 2.7132 20 14 7.8556 -8.9652 5.3302 21 1 7.3384 -7.9658 6.2990 22 1 6.8188 -9.9998 5.0859 23 1 9.0748 -9.6073 5.8840 24 6 8.2389 -4.6773 2.1366 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3632 -0.5139 -0.8900 28 1 1.9972 -1.8771 -0.8892 29 1 1.9971 -1.8763 0.8908 30 1 4.0277 -0.4538 0.8910 31 1 4.0284 -0.4541 -0.8889 32 1 4.2666 -2.9220 -0.8891 33 1 4.2661 -2.9223 0.8909 34 1 8.8518 -2.4914 0.6715 35 1 8.8051 -3.2166 -0.9952 36 1 6.7037 -5.0115 -0.9936 37 1 5.9817 -4.9452 0.6747 38 1 10.1299 -5.3313 0.0936 39 1 8.7910 -6.0640 -0.8503 40 1 8.2370 -7.5420 0.8622 41 1 9.8979 -7.2297 1.4344 42 1 8.8887 -9.7673 2.8053 43 1 7.3243 -4.2992 2.5933 44 1 9.1034 -4.1261 2.5066 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146992184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:10 Heat of formation + Delta-G solvation = -44.535369 kcal Electronic energy + Delta-G solvation = -23504.328123 eV Core-core repulsion = 20036.503574 eV Total energy + Delta-G solvation = -3467.824549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77209 -40.50474 -39.61528 -37.22222 -35.25768 -34.09029 -31.85398 -31.30791 -30.13157 -28.64795 -27.38882 -27.17982 -25.33510 -23.08304 -22.07656 -20.60729 -20.24869 -19.50511 -18.79004 -17.86146 -17.23660 -17.17633 -16.74949 -16.45149 -16.37070 -15.90594 -15.63366 -15.50765 -15.43071 -14.48830 -14.23133 -14.02311 -13.75426 -13.65846 -13.34045 -13.19960 -13.04093 -12.85414 -12.79641 -12.77006 -12.73446 -12.48058 -12.33627 -11.97041 -11.92802 -11.74821 -11.72510 -11.64882 -11.26865 -10.81213 -10.66322 -10.49557 -9.68942 -8.86313 -7.82468 -5.17196 1.07629 1.48011 1.49038 1.58787 1.63905 1.83156 2.50880 3.14698 3.30831 3.40208 3.51487 3.68392 3.76516 4.02991 4.04371 4.09750 4.16230 4.21963 4.37613 4.50271 4.56601 4.58454 4.64293 4.66643 4.73849 4.74857 4.78008 4.80981 4.85911 4.94824 4.99589 5.11861 5.14053 5.14842 5.24850 5.27637 5.34805 5.48724 5.74598 5.84578 6.23545 6.64751 6.73450 7.14569 7.14865 7.80271 8.44215 9.27479 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.003110 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.381939 B = 9002.414556 C =10108.419420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.348 3.652 3 O -0.516 6.516 4 C -0.168 4.168 5 C -0.093 4.093 6 C -0.125 4.125 7 C 0.522 3.478 8 O -0.598 6.598 9 N -0.643 5.643 10 C 0.124 3.876 11 C -0.099 4.099 12 C 0.132 3.868 13 C -0.113 4.113 14 C 0.185 3.815 15 N -0.624 5.624 16 C -0.239 4.239 17 H 0.076 0.924 18 C -0.062 4.062 19 N -0.947 5.947 20 Si 0.974 3.026 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.295 1.295 24 C 0.159 3.841 25 H 0.115 0.885 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.019 0.981 41 H 0.003 0.997 42 H 0.247 0.753 43 H 0.034 0.966 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.212 8.903 -10.143 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.228 3.772 3 O -0.394 6.394 4 C -0.205 4.205 5 C -0.131 4.131 6 C -0.165 4.165 7 C 0.314 3.686 8 O -0.479 6.479 9 N -0.378 5.378 10 C 0.001 3.999 11 C -0.101 4.101 12 C 0.010 3.990 13 C -0.152 4.152 14 C 0.060 3.940 15 N -0.351 5.351 16 C -0.368 4.368 17 H 0.094 0.906 18 C -0.255 4.255 19 N -0.596 5.596 20 Si 0.803 3.197 21 H -0.194 1.194 22 H -0.216 1.216 23 H -0.222 1.222 24 C 0.034 3.966 25 H 0.133 0.867 26 H 0.088 0.912 27 H 0.136 0.864 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.038 0.962 41 H 0.021 0.979 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -13.844 10.016 -10.041 19.819 hybrid contribution 0.379 -0.586 1.166 1.359 sum -13.465 9.430 -8.875 18.681 Atomic orbital electron populations 1.22346 0.91547 1.04995 1.06773 1.25369 0.93734 0.90060 0.68020 1.90444 1.73415 1.37192 1.38316 1.22226 0.93292 0.97329 1.07626 1.21050 0.94632 0.95598 1.01863 1.21658 0.88274 0.99855 1.06683 1.21142 0.89814 0.83072 0.74544 1.90681 1.81296 1.22796 1.53157 1.50351 1.07847 1.07307 1.72257 1.23021 0.81025 0.94209 1.01626 1.22289 0.96981 0.95148 0.95645 1.23141 0.96416 0.77412 1.02006 1.22529 0.99061 0.94547 0.99025 1.20996 0.95719 0.92435 0.84870 1.44848 1.75619 1.03017 1.11581 1.19405 1.35675 0.91131 0.90624 0.90564 1.25551 1.01980 0.97049 1.00914 1.70170 1.51896 1.06248 1.31326 0.85079 0.76923 0.78352 0.79381 1.19393 1.21596 1.22244 1.21117 0.97587 0.85297 0.92605 0.86698 0.91240 0.86390 0.84898 0.85569 0.94036 0.93304 0.85783 0.87121 0.91223 0.87025 0.86377 0.89765 0.90605 0.88465 0.96235 0.97878 0.94389 0.94735 0.96424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 10.26 71.24 0.73 -0.83 16 2 C 0.35 5.69 7.27 29.10 0.21 5.90 16 3 O -0.52 -14.41 16.71 -1.42 -0.02 -14.44 16 4 C -0.17 -1.98 5.64 29.85 0.17 -1.81 16 5 C -0.09 -2.01 3.79 30.60 0.12 -1.89 16 6 C -0.13 -2.40 5.44 29.85 0.16 -2.24 16 7 C 0.52 15.18 8.06 87.66 0.71 15.89 16 8 O -0.60 -22.96 16.71 -3.05 -0.05 -23.01 16 9 N -0.64 -17.17 3.62 -863.69 -3.12 -20.29 16 10 C 0.12 3.23 8.21 85.90 0.71 3.94 16 11 C -0.10 -2.92 0.99 -52.15 -0.05 -2.97 16 12 C 0.13 3.17 7.92 85.91 0.68 3.85 16 13 C -0.11 -3.50 6.36 31.36 0.20 -3.30 16 14 C 0.18 8.40 5.39 86.80 0.47 8.87 16 15 N -0.62 -30.51 3.41 -693.35 -2.36 -32.87 16 16 C -0.24 -13.03 10.28 84.03 0.86 -12.16 16 17 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 19 N -0.95 -54.91 10.30 21.65 0.22 -54.68 16 20 Si 0.97 44.63 29.55 68.60 2.03 46.66 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 23 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 24 C 0.16 6.24 6.63 86.28 0.57 6.81 16 25 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 27 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.04 1.15 8.06 -2.39 -0.02 1.13 16 31 H 0.05 1.28 8.06 -2.38 -0.02 1.26 16 32 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.07 1.99 8.12 -2.38 -0.02 1.97 16 35 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.12 2.16 8.04 -2.39 -0.02 2.14 16 37 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.10 2.42 7.99 -2.39 -0.02 2.40 16 40 H 0.02 0.98 7.39 -2.39 -0.02 0.96 16 41 H 0.00 0.16 7.49 -2.39 -0.02 0.14 16 42 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16 44 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -79.32 362.20 3.65 -75.67 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 0.96 Total: 5.87 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 6.00 Total: 17.10 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -5.26 Total: -107.85 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.07 Total: -37.45 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -79.32 3.65 -75.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146992184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.133 kcal (2) G-P(sol) polarization free energy of solvation -79.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds