Wall clock time and date at job start Tue Mar 31 2020 03:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47358 * 2 1 4 4 N 1.46499 * 109.47387 * 180.02562 * 3 2 1 5 5 N 1.39931 * 125.75156 * 270.02658 * 4 3 2 6 6 C 1.30449 * 108.89399 * 179.73194 * 5 4 3 7 7 C 1.50703 * 125.98936 * 180.26413 * 6 5 4 8 8 C 1.41292 * 108.02576 * 0.37804 * 6 5 4 9 9 C 1.47425 * 126.41658 * 179.88269 * 8 6 5 10 10 O 1.21603 * 120.00000 * 269.68993 * 9 8 6 11 11 N 1.34777 * 119.99743 * 89.68684 * 9 8 6 12 12 C 1.46499 * 119.99665 * 179.72398 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46499 * 109.47198 * 179.97438 * 13 12 11 15 15 C 1.36936 * 119.99757 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00476 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00323 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48504 * 109.47032 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 C 1.34263 * 125.75414 * 89.99640 * 4 3 2 24 24 C 1.50698 * 126.29124 * 0.02562 * 23 4 3 25 25 H 1.09000 * 109.46960 * 300.00504 * 1 2 3 26 26 H 1.09000 * 109.47222 * 60.00068 * 1 2 3 27 27 H 1.08996 * 109.47582 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46960 * 239.99495 * 2 1 3 29 29 H 1.09005 * 109.46517 * 119.99878 * 2 1 3 30 30 H 1.09000 * 109.47497 * 59.99825 * 3 2 1 31 31 H 1.09000 * 109.46898 * 300.00130 * 3 2 1 32 32 H 1.09004 * 109.46577 * 270.13763 * 7 6 5 33 33 H 1.09008 * 109.47034 * 30.13334 * 7 6 5 34 34 H 1.08999 * 109.47402 * 150.13588 * 7 6 5 35 35 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 36 36 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 37 37 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 38 38 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 39 39 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 40 40 H 0.97000 * 120.00386 * 359.97438 * 14 13 12 41 41 H 0.96996 * 120.00458 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.47542 * 270.00115 * 24 23 4 43 43 H 1.09003 * 109.46793 * 30.00432 * 24 23 4 44 44 H 1.09001 * 109.46875 * 149.99711 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 7 4.3231 1.4417 1.1347 6 6 5.5714 1.4362 0.7558 7 6 6.7729 1.4279 1.6655 8 6 5.5996 1.4419 -0.6568 9 6 6.8032 1.4411 -1.5081 10 8 7.3002 2.4938 -1.8595 11 7 7.3528 0.2734 -1.8968 12 6 8.5453 0.2726 -2.7478 13 6 8.9577 -1.1702 -3.0465 14 7 10.1498 -1.1711 -3.8979 15 6 10.7051 -2.3574 -4.2973 16 1 10.2640 -3.2923 -3.9849 17 6 11.8344 -2.3582 -5.1045 18 7 12.3712 -1.2188 -5.4865 19 14 12.5915 -3.9765 -5.6499 20 1 11.5932 -4.7524 -6.4287 21 1 13.7801 -3.7060 -6.4980 22 1 13.0034 -4.7576 -4.4559 23 6 4.2891 1.4425 -1.0905 24 6 3.8240 1.4432 -2.5239 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6768 1.9563 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 7.0663 2.4537 1.8891 33 1 6.5234 0.9111 2.5923 34 1 7.5979 0.9131 1.1732 35 1 6.9562 -0.5663 -1.6168 36 1 8.3251 0.7884 -3.6825 37 1 9.3590 0.7840 -2.2336 38 1 9.1778 -1.6860 -2.1119 39 1 8.1440 -1.6817 -3.5608 40 1 10.5459 -0.3314 -4.1788 41 1 13.1605 -1.2193 -6.0502 42 1 3.7114 0.4157 -2.8699 43 1 2.8655 1.9575 -2.5946 44 1 4.5585 1.9570 -3.1440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147092734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:46 Heat of formation + Delta-G solvation = 31.645027 kcal Electronic energy + Delta-G solvation = -23121.557005 eV Core-core repulsion = 19689.328637 eV Total energy + Delta-G solvation = -3432.228368 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.65451 -39.02704 -35.99458 -35.56481 -33.73733 -33.29489 -31.96576 -31.06902 -29.16850 -28.29497 -27.05803 -25.79727 -23.74319 -22.49885 -21.76764 -21.32762 -19.76107 -19.58267 -17.58987 -17.13097 -16.42159 -15.87375 -15.44458 -15.30823 -15.06193 -14.53180 -14.20644 -13.97793 -13.77677 -13.61156 -13.49549 -13.15866 -13.14303 -12.85625 -12.77847 -12.71217 -12.56307 -12.35586 -12.08476 -11.73215 -11.39073 -11.33285 -11.07894 -10.87539 -10.80661 -10.77927 -10.14623 -9.87214 -9.66915 -9.33745 -8.94666 -8.75956 -8.63738 -6.97549 -5.77829 -3.08412 1.51841 2.10753 2.34576 2.75938 3.43772 3.45682 3.49032 3.53175 4.10954 4.24708 4.33407 4.49670 4.59664 4.61929 4.74155 4.84276 4.96130 5.12398 5.14214 5.15594 5.19754 5.46231 5.49038 5.50894 5.51973 5.54204 5.58982 5.62778 5.70862 5.76358 5.82303 5.85871 6.00397 6.19211 6.38711 6.54943 6.69990 6.74142 6.80833 7.48926 7.66963 7.73361 8.39507 8.44171 9.51024 10.06234 10.41057 11.44702 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.002673 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.087708 B =10473.059439 C =10984.115102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.130 3.870 4 N -0.360 5.360 5 N -0.299 5.299 6 C 0.114 3.886 7 C -0.077 4.077 8 C -0.282 4.282 9 C 0.595 3.405 10 O -0.537 6.537 11 N -0.715 5.715 12 C 0.110 3.890 13 C 0.145 3.855 14 N -0.729 5.729 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.910 3.090 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.127 3.873 24 C -0.099 4.099 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.625 4.530 12.384 27.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.009 3.991 4 N -0.139 5.139 5 N -0.120 5.120 6 C -0.053 4.053 7 C -0.136 4.136 8 C -0.296 4.296 9 C 0.379 3.621 10 O -0.413 6.413 11 N -0.366 5.366 12 C -0.013 4.013 13 C 0.017 3.983 14 N -0.375 5.375 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.003 4.003 24 C -0.157 4.157 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.152 5.134 13.089 28.815 hybrid contribution 0.850 -1.012 -0.971 1.640 sum -24.301 4.122 12.118 27.466 Atomic orbital electron populations 1.21697 0.94150 1.02654 1.02233 1.21936 0.96766 0.95591 1.03668 1.21843 0.73921 0.98733 1.04635 1.48280 1.06310 1.56229 1.03122 1.77090 1.01115 1.26612 1.07181 1.22310 0.93595 0.97199 0.92152 1.20264 0.92138 1.03579 0.97597 1.19896 0.92650 1.23340 0.93762 1.17264 0.82275 0.83672 0.78860 1.90790 1.62951 1.31509 1.56089 1.45973 1.30251 1.08288 1.52092 1.21596 0.86319 0.99175 0.94246 1.20751 0.90903 0.92067 0.94580 1.42186 1.29508 1.06792 1.58972 1.19144 1.07449 0.85842 1.25045 0.91115 1.24776 0.98530 0.96961 1.00575 1.69652 1.23936 1.24064 1.40246 0.86230 0.78571 0.82888 0.78236 1.21221 1.21623 1.21199 1.21323 0.89759 0.98252 0.90991 1.20581 1.02619 1.03981 0.88536 0.92244 0.92268 0.91821 0.91149 0.90778 0.88484 0.88803 0.89998 0.90441 0.90132 0.76646 0.91276 0.91201 0.95781 0.95874 0.77990 0.93318 0.89386 0.90629 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.14 -0.81 6.26 -26.73 -0.17 -0.98 16 3 C 0.13 0.85 6.21 -4.05 -0.03 0.83 16 4 N -0.36 -3.81 3.58 -56.61 -0.20 -4.02 16 5 N -0.30 -3.83 12.50 33.90 0.42 -3.41 16 6 C 0.11 1.49 7.26 -82.02 -0.60 0.90 16 7 C -0.08 -0.82 10.28 36.01 0.37 -0.45 16 8 C -0.28 -3.84 5.88 -105.07 -0.62 -4.46 16 9 C 0.60 9.36 6.97 -12.52 -0.09 9.27 16 10 O -0.54 -10.57 17.11 5.27 0.09 -10.48 16 11 N -0.72 -10.36 5.55 -61.38 -0.34 -10.70 16 12 C 0.11 1.92 5.79 -4.04 -0.02 1.90 16 13 C 0.15 2.85 6.37 -4.04 -0.03 2.83 16 14 N -0.73 -18.58 5.60 -59.91 -0.34 -18.92 16 15 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 C 0.13 1.44 7.01 -81.60 -0.57 0.87 16 24 C -0.10 -0.82 9.93 36.00 0.36 -0.46 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.43 7.01 -51.93 -0.36 0.06 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 35 H 0.40 4.87 8.46 -40.82 -0.35 4.52 16 36 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.39 10.41 7.67 -40.82 -0.31 10.09 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.44 7.05 -51.93 -0.37 0.07 16 44 H 0.09 0.89 7.96 -51.93 -0.41 0.47 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -35.00 373.78 -7.56 -42.56 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.26 Total: 7.00 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.26 Total: 2.61 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: 0.27 Total: -64.62 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.00 -7.56 -42.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147092734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.205 kcal (2) G-P(sol) polarization free energy of solvation -35.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds