Wall clock time and date at job start Tue Mar 31 2020 03:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.46975 * 2 1 4 4 N 1.40080 * 126.03855 * 270.15434 * 3 2 1 5 5 C 1.30836 * 108.20867 * 180.23079 * 4 3 2 6 6 C 1.50695 * 125.90309 * 179.81600 * 5 4 3 7 7 C 1.39880 * 108.19611 * 359.77857 * 5 4 3 8 8 C 1.50706 * 126.03564 * 179.97438 * 7 5 4 9 9 C 1.50689 * 109.47334 * 270.02957 * 8 7 5 10 10 O 1.21283 * 120.00494 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00170 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00420 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47436 * 179.97438 * 12 11 9 14 14 N 1.46492 * 109.47097 * 180.02562 * 13 12 11 15 15 C 1.36938 * 119.99966 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00145 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00238 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00252 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00317 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47073 * 90.00273 * 19 17 15 21 21 H 1.48501 * 109.47421 * 210.00535 * 19 17 15 22 22 H 1.48507 * 109.46722 * 330.00562 * 19 17 15 23 23 C 1.34946 * 126.03491 * 89.99650 * 3 2 1 24 24 C 1.50703 * 126.12821 * 0.04077 * 23 3 2 25 25 H 1.09002 * 109.47268 * 60.00269 * 1 2 3 26 26 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47583 * 299.99398 * 1 2 3 28 28 H 1.08995 * 109.47583 * 240.00602 * 2 1 3 29 29 H 1.09002 * 109.47268 * 119.99731 * 2 1 3 30 30 H 1.09003 * 109.46956 * 269.95831 * 6 5 4 31 31 H 1.08999 * 109.47037 * 29.95728 * 6 5 4 32 32 H 1.09003 * 109.47071 * 149.95864 * 6 5 4 33 33 H 1.08997 * 109.46991 * 30.03182 * 8 7 5 34 34 H 1.08996 * 109.46546 * 150.02478 * 8 7 5 35 35 H 0.97005 * 119.99474 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47109 * 300.00671 * 12 11 9 37 37 H 1.09006 * 109.46773 * 60.00253 * 12 11 9 38 38 H 1.08997 * 109.47155 * 300.00540 * 13 12 11 39 39 H 1.09002 * 109.46307 * 60.00325 * 13 12 11 40 40 H 0.96997 * 120.00122 * 0.02562 * 14 13 12 41 41 H 0.97002 * 120.00679 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47152 * 269.68605 * 24 23 3 43 43 H 1.09001 * 109.46980 * 149.68706 * 24 23 3 44 44 H 1.09004 * 109.47113 * 29.68687 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3316 -0.7321 6 6 3.1191 4.4760 -1.6236 7 6 2.7158 3.3394 0.6666 8 6 3.1307 4.4913 1.5454 9 6 4.6062 4.3956 1.8358 10 8 5.2572 3.4822 1.3742 11 7 5.2027 5.3250 2.6084 12 6 6.6371 5.2317 2.8912 13 6 7.0583 6.4012 3.7832 14 7 8.4927 6.3082 4.0654 15 6 9.0988 7.2526 4.8504 16 1 8.5191 8.0657 5.2617 17 6 10.4579 7.1642 5.1183 18 7 11.1643 6.1730 4.6174 19 14 11.2845 8.4520 6.1896 20 1 11.2294 8.0234 7.6103 21 1 12.7017 8.6065 5.7737 22 1 10.5793 9.7500 6.0364 23 6 2.2828 2.1298 1.0913 24 6 2.1297 1.6943 2.5258 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.1851 4.4056 -1.8400 31 1 2.5554 4.4296 -2.5553 32 1 2.9120 5.4204 -1.1202 33 1 2.9210 5.4314 1.0352 34 1 2.5730 4.4535 2.4811 35 1 4.6820 6.0553 2.9779 36 1 6.8465 4.2914 3.4012 37 1 7.1951 5.2696 1.9555 38 1 6.8489 7.3413 3.2728 39 1 6.5003 6.3637 4.7188 40 1 9.0133 5.5777 3.6963 41 1 12.1141 6.1114 4.8043 42 1 1.1255 1.9363 2.8738 43 1 2.8630 2.2131 3.1433 44 1 2.2898 0.6185 2.5981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148221782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:13 Heat of formation + Delta-G solvation = 35.892318 kcal Electronic energy + Delta-G solvation = -23078.947823 eV Core-core repulsion = 19646.903632 eV Total energy + Delta-G solvation = -3432.044191 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54236 -39.25567 -35.68080 -35.17300 -33.74790 -33.10784 -31.76879 -31.13628 -29.51379 -27.76863 -27.35382 -25.96048 -23.63060 -23.01860 -21.44992 -20.60543 -19.59256 -19.39892 -17.32843 -16.86147 -16.71564 -15.53569 -15.41464 -15.34618 -14.81194 -14.52700 -14.32198 -13.82086 -13.58372 -13.44382 -13.34131 -13.30254 -13.17882 -13.06901 -12.79833 -12.62001 -12.32568 -12.17521 -11.95275 -11.76175 -11.59790 -11.30980 -11.08270 -10.80893 -10.78226 -10.50682 -10.10974 -9.82731 -9.61884 -9.09936 -8.95059 -8.74236 -8.32740 -6.97996 -5.78471 -3.09124 1.77573 2.34748 2.61532 2.88275 3.42864 3.46083 3.49592 3.55336 4.22630 4.45286 4.59272 4.62334 4.70341 4.75627 4.89454 4.96928 5.05004 5.15761 5.22392 5.24766 5.31667 5.32903 5.46563 5.51760 5.57388 5.61038 5.62370 5.69230 5.81920 5.82831 5.97996 6.00269 6.10506 6.19789 6.55728 6.64335 6.74116 6.82016 6.96123 7.66717 7.70298 7.75240 8.38986 8.49004 9.50318 10.05786 10.40346 11.44123 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.033846 B = 0.002387 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.067227 B =11727.936558 C =11990.224683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.129 3.871 3 N -0.371 5.371 4 N -0.301 5.301 5 C 0.091 3.909 6 C -0.074 4.074 7 C -0.218 4.218 8 C -0.059 4.059 9 C 0.507 3.493 10 O -0.533 6.533 11 N -0.728 5.728 12 C 0.112 3.888 13 C 0.145 3.855 14 N -0.730 5.730 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.100 3.900 24 C -0.093 4.093 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.398 0.602 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.367 -8.769 -7.943 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.153 5.153 4 N -0.122 5.122 5 C -0.075 4.075 6 C -0.132 4.132 7 C -0.229 4.229 8 C -0.101 4.101 9 C 0.293 3.707 10 O -0.409 6.409 11 N -0.380 5.380 12 C -0.012 4.012 13 C 0.017 3.983 14 N -0.375 5.375 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.028 4.028 24 C -0.151 4.151 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.232 0.768 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.158 -10.201 -9.195 28.662 hybrid contribution 0.709 1.177 1.382 1.949 sum -24.449 -9.024 -7.813 27.207 Atomic orbital electron populations 1.22178 0.94410 1.02916 1.03150 1.21609 0.95015 0.78241 1.04334 1.48366 1.51999 1.11664 1.03258 1.77264 1.23745 1.03584 1.07640 1.22097 0.97839 0.94216 0.93349 1.20181 1.02123 0.93268 0.97657 1.18977 1.14669 0.96176 0.93081 1.19891 0.92646 0.97663 0.99852 1.20695 0.89795 0.81932 0.78313 1.90713 1.65986 1.33468 1.50694 1.45980 1.10718 1.29021 1.52285 1.21527 0.79508 1.00073 1.00076 1.20756 0.87838 0.94343 0.95383 1.42202 1.02487 1.31961 1.60864 1.19194 0.91648 1.03797 1.22777 0.91029 1.24786 0.96498 0.98586 1.01070 1.69667 1.07149 1.32252 1.48835 0.86148 0.78811 0.80847 0.80097 1.21651 1.21707 1.20701 1.20722 0.99803 0.91619 0.90619 1.20465 1.03207 1.02160 0.89274 0.91665 0.90604 0.92065 0.88824 0.89090 0.90295 0.91070 0.90608 0.88330 0.88668 0.76808 0.91561 0.91496 0.95816 0.95865 0.78028 0.93375 0.90252 0.89656 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.24 37.15 0.38 -0.63 16 2 C 0.13 1.01 6.96 -4.04 -0.03 0.98 16 3 N -0.37 -4.39 3.61 -57.14 -0.21 -4.60 16 4 N -0.30 -4.24 12.58 33.67 0.42 -3.81 16 5 C 0.09 1.21 7.22 -82.40 -0.59 0.62 16 6 C -0.07 -0.76 10.26 36.00 0.37 -0.40 16 7 C -0.22 -2.71 4.59 -105.05 -0.48 -3.19 16 8 C -0.06 -0.61 5.61 -29.04 -0.16 -0.77 16 9 C 0.51 7.18 7.82 -10.99 -0.09 7.09 16 10 O -0.53 -10.10 16.03 5.56 0.09 -10.01 16 11 N -0.73 -9.75 5.56 -60.30 -0.33 -10.08 16 12 C 0.11 1.94 5.79 -4.04 -0.02 1.92 16 13 C 0.14 2.84 6.37 -4.05 -0.03 2.81 16 14 N -0.73 -18.68 5.60 -59.91 -0.34 -19.02 16 15 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 19 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.10 1.15 6.93 -82.27 -0.57 0.58 16 24 C -0.09 -0.76 9.73 36.01 0.35 -0.41 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.54 7.04 -51.93 -0.37 0.18 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.63 7.26 -51.93 -0.38 0.25 16 33 H 0.10 0.79 7.26 -51.93 -0.38 0.41 16 34 H 0.10 0.73 7.77 -51.93 -0.40 0.32 16 35 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.39 10.50 7.67 -40.82 -0.31 10.18 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.75 7.78 -51.93 -0.40 0.34 16 44 H 0.07 0.49 7.07 -51.93 -0.37 0.12 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -36.68 370.34 -7.35 -44.04 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.15 Total: 7.12 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.12 Total: 1.18 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: 0.27 Total: -65.23 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.68 -7.35 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148221782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.929 kcal (2) G-P(sol) polarization free energy of solvation -36.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds