Wall clock time and date at job start Tue Mar 31 2020 03:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46831 * 2 1 4 4 C 1.36939 * 120.00476 * 274.57570 * 3 2 1 5 5 H 1.07995 * 120.00175 * 140.38959 * 4 3 2 6 6 C 1.38812 * 119.99527 * 320.38756 * 4 3 2 7 7 N 1.31621 * 119.99719 * 156.48779 * 6 4 3 8 8 Si 1.86800 * 120.00335 * 336.48714 * 6 4 3 9 9 H 1.48501 * 109.47254 * 95.30243 * 8 6 4 10 10 H 1.48500 * 109.47252 * 215.29996 * 8 6 4 11 11 H 1.48503 * 109.47082 * 335.30134 * 8 6 4 12 12 C 1.46507 * 120.00063 * 94.58014 * 3 2 1 13 13 H 1.08996 * 109.47607 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47322 * 59.99279 * 12 3 2 15 15 C 1.53005 * 109.46708 * 299.99914 * 12 3 2 16 16 N 1.46503 * 109.46960 * 304.99614 * 15 12 3 17 17 C 1.34776 * 120.00072 * 179.97438 * 16 15 12 18 18 O 1.21281 * 119.99966 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00121 * 180.02562 * 17 16 15 20 20 C 1.50702 * 109.47098 * 180.02562 * 19 17 16 21 21 C 1.39872 * 125.89798 * 124.71292 * 20 19 17 22 22 C 1.35311 * 107.91900 * 179.86623 * 21 20 19 23 23 C 1.50701 * 126.12689 * 180.14962 * 22 21 20 24 24 N 1.34951 * 107.74873 * 0.39400 * 22 21 20 25 25 H 0.96998 * 126.04079 * 179.75146 * 24 22 21 26 26 N 1.30833 * 125.89621 * 305.02877 * 20 19 17 27 27 H 1.08997 * 109.47360 * 59.99863 * 1 2 3 28 28 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47209 * 299.99789 * 1 2 3 30 30 H 1.08997 * 109.47360 * 120.00137 * 2 1 3 31 31 H 1.08994 * 109.47209 * 240.00211 * 2 1 3 32 32 H 0.97006 * 119.99943 * 180.02562 * 7 6 4 33 33 H 1.08991 * 109.46938 * 179.97438 * 14 12 3 34 34 H 1.08996 * 109.47406 * 300.00890 * 14 12 3 35 35 H 1.09000 * 109.46820 * 60.00505 * 14 12 3 36 36 H 1.08997 * 109.47170 * 64.99598 * 15 12 3 37 37 H 1.09007 * 109.46871 * 185.00181 * 15 12 3 38 38 H 0.97000 * 119.99804 * 0.02562 * 16 15 12 39 39 H 1.08997 * 109.46881 * 299.99928 * 19 17 16 40 40 H 1.08991 * 109.46967 * 60.00114 * 19 17 16 41 41 H 1.08002 * 126.03697 * 359.97438 * 21 20 19 42 42 H 1.09000 * 109.46871 * 270.26310 * 23 22 21 43 43 H 1.09001 * 109.47108 * 30.26547 * 23 22 21 44 44 H 1.09006 * 109.47108 * 150.26635 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1573 2.0584 -1.1821 5 1 1.8868 3.1022 -1.2415 6 6 2.6460 1.4030 -2.3039 7 7 2.3639 1.8576 -3.5065 8 14 3.7039 -0.1238 -2.1069 9 1 2.8510 -1.3345 -2.2162 10 1 4.7388 -0.1498 -3.1716 11 1 4.3630 -0.1011 -0.7764 12 6 2.3579 2.0381 1.2647 13 1 2.6997 3.0539 1.0663 14 6 3.4691 1.2532 1.9648 15 6 1.1210 2.0833 2.1642 16 7 0.0193 2.7303 1.4473 17 6 -1.1781 2.8818 2.0470 18 8 -1.3435 2.4829 3.1803 19 6 -2.3116 3.5469 1.3093 20 6 -3.5299 3.5915 2.1953 21 6 -4.2526 4.7387 2.5388 22 6 -5.2728 4.3625 3.3441 23 6 -6.3088 5.2737 3.9502 24 7 -5.1932 3.0258 3.5116 25 1 -5.7933 2.4806 4.0441 26 7 -4.0907 2.5646 2.7806 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 2.7051 1.3994 -4.2906 33 1 3.7220 1.7422 2.9055 34 1 3.1269 0.2375 2.1633 35 1 4.3503 1.2210 1.3241 36 1 0.8315 1.0680 2.4351 37 1 1.3490 2.6495 3.0673 38 1 0.1515 3.0491 0.5407 39 1 -2.0224 4.5623 1.0384 40 1 -2.5391 2.9807 0.4063 41 1 -4.0357 5.7465 2.2166 42 1 -5.9563 5.6318 4.9175 43 1 -6.4779 6.1229 3.2880 44 1 -7.2415 4.7255 4.0836 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152674666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:19 Heat of formation + Delta-G solvation = 30.212466 kcal Electronic energy + Delta-G solvation = -24219.184870 eV Core-core repulsion = 20786.894381 eV Total energy + Delta-G solvation = -3432.290488 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.19019 -40.55827 -38.73918 -35.37742 -34.29827 -33.84646 -32.83956 -32.39519 -30.48575 -29.74352 -27.79123 -26.77335 -25.50701 -23.99687 -22.10439 -21.38282 -20.94166 -20.28046 -18.77166 -18.32015 -17.75817 -17.52827 -16.96395 -16.41273 -16.08730 -15.63869 -15.07118 -14.88715 -14.61720 -14.50668 -14.34237 -14.30801 -14.10760 -13.84987 -13.63919 -13.50391 -13.39614 -13.02705 -12.93027 -12.77400 -12.69926 -12.59736 -12.53857 -12.11221 -11.76642 -11.46517 -11.37714 -11.32253 -10.82403 -10.51932 -10.22096 -9.84279 -9.48634 -8.69301 -8.13576 -5.50446 0.98645 1.35195 1.45853 1.55437 1.75348 1.79568 2.02620 2.48634 2.54195 3.11118 3.37068 3.63626 3.82955 4.04855 4.15753 4.22463 4.31609 4.43311 4.47425 4.54671 4.56099 4.71527 4.74730 4.78025 4.79314 4.80713 4.87266 4.89423 4.92358 5.10072 5.13574 5.23372 5.29447 5.30987 5.40261 5.54432 5.68996 5.70958 6.02576 6.28322 6.51327 6.74761 6.80794 7.06865 7.41110 7.70305 8.16125 9.04958 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.026478 B = 0.003534 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.227363 B = 7921.790701 C = 8277.978136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 N -0.603 5.603 4 C -0.244 4.244 5 H 0.059 0.941 6 C -0.009 4.009 7 N -0.941 5.941 8 Si 0.926 3.074 9 H -0.287 1.287 10 H -0.317 1.317 11 H -0.256 1.256 12 C 0.156 3.844 13 H 0.077 0.923 14 C -0.157 4.157 15 C 0.119 3.881 16 N -0.705 5.705 17 C 0.513 3.487 18 O -0.579 6.579 19 C -0.060 4.060 20 C 0.077 3.923 21 C -0.287 4.287 22 C 0.088 3.912 23 C -0.087 4.087 24 N -0.477 5.477 25 H 0.445 0.555 26 N -0.316 5.316 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.259 0.741 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.411 0.589 39 H 0.141 0.859 40 H 0.115 0.885 41 H 0.168 0.832 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 6.296 14.081 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.005 3.995 3 N -0.327 5.327 4 C -0.374 4.374 5 H 0.077 0.923 6 C -0.207 4.207 7 N -0.585 5.585 8 Si 0.757 3.243 9 H -0.215 1.215 10 H -0.246 1.246 11 H -0.180 1.180 12 C 0.050 3.950 13 H 0.095 0.905 14 C -0.216 4.216 15 C -0.006 4.006 16 N -0.356 5.356 17 C 0.299 3.701 18 O -0.460 6.460 19 C -0.102 4.102 20 C -0.090 4.090 21 C -0.316 4.316 22 C -0.041 4.041 23 C -0.145 4.145 24 N -0.187 5.187 25 H 0.291 0.709 26 N -0.139 5.139 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.247 0.753 39 H 0.159 0.841 40 H 0.133 0.867 41 H 0.185 0.815 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.326 4.756 14.903 20.550 hybrid contribution 0.529 -0.416 -0.867 1.097 sum -12.797 4.339 14.036 19.484 Atomic orbital electron populations 1.22202 0.97765 1.00128 1.01277 1.21078 0.93513 0.86282 0.98611 1.44269 1.74846 1.11477 1.02074 1.18654 1.36243 0.95970 0.86527 0.92327 1.25972 0.99137 1.00373 0.95180 1.69983 1.46680 1.43721 0.98098 0.86126 0.79655 0.81236 0.77281 1.21515 1.24624 1.17980 1.20874 0.91777 0.97150 0.85178 0.90500 1.22150 0.98401 1.00555 1.00501 1.21747 0.87141 0.96885 0.94862 1.45921 1.10801 1.59879 1.19009 1.20722 0.83922 0.78957 0.86466 1.90670 1.83255 1.51669 1.20366 1.20124 0.87884 1.05017 0.97147 1.21850 0.96976 0.92013 0.98151 1.21466 1.00392 1.00113 1.09657 1.21774 0.98945 0.85265 0.98078 1.20596 0.94668 0.97525 1.01747 1.46384 1.24565 1.06629 1.41110 0.70929 1.77340 1.00386 1.23681 1.12512 0.94308 0.93270 0.92497 0.92243 0.95622 0.93191 0.90369 0.93013 0.93618 0.93257 0.91438 0.75251 0.84143 0.86683 0.81469 0.89092 0.88018 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 9.83 71.98 0.71 -5.19 16 2 C 0.13 5.28 4.70 86.38 0.41 5.69 16 3 N -0.60 -25.16 1.42 -678.03 -0.96 -26.12 16 4 C -0.24 -12.29 9.50 84.03 0.80 -11.49 16 5 H 0.06 3.15 8.06 -2.91 -0.02 3.13 16 6 C -0.01 -0.51 5.29 84.86 0.45 -0.06 16 7 N -0.94 -55.65 13.97 21.65 0.30 -55.35 16 8 Si 0.93 44.74 25.23 68.60 1.73 46.47 16 9 H -0.29 -13.72 6.66 99.48 0.66 -13.05 16 10 H -0.32 -15.86 7.11 99.48 0.71 -15.15 16 11 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 12 C 0.16 5.38 2.87 44.99 0.13 5.51 16 13 H 0.08 2.68 7.89 -2.39 -0.02 2.66 16 14 C -0.16 -4.80 9.18 71.98 0.66 -4.14 16 15 C 0.12 3.86 4.33 86.38 0.37 4.24 16 16 N -0.70 -22.73 3.99 -463.04 -1.85 -24.58 16 17 C 0.51 17.10 7.57 87.66 0.66 17.76 16 18 O -0.58 -23.63 15.56 -3.03 -0.05 -23.67 16 19 C -0.06 -1.62 6.28 29.10 0.18 -1.44 16 20 C 0.08 2.25 6.02 43.10 0.26 2.51 16 21 C -0.29 -6.60 10.64 21.99 0.23 -6.37 16 22 C 0.09 1.71 7.21 41.40 0.30 2.01 16 23 C -0.09 -0.77 10.43 71.24 0.74 -0.02 16 24 N -0.48 -11.07 7.36 -48.00 -0.35 -11.42 16 25 H 0.45 7.37 8.96 -213.33 -1.91 5.46 16 26 N -0.32 -10.25 12.04 -47.38 -0.57 -10.82 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.69 8.14 -2.38 -0.02 1.68 16 29 H 0.06 2.12 4.89 -2.39 -0.01 2.11 16 30 H 0.06 2.17 6.43 -2.39 -0.02 2.16 16 31 H 0.03 1.17 3.44 -2.39 -0.01 1.16 16 32 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.55 6.66 -2.39 -0.02 1.54 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.72 6.96 -2.39 -0.02 1.70 16 37 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.41 13.53 7.89 -92.71 -0.73 12.80 16 39 H 0.14 2.81 8.12 -2.39 -0.02 2.79 16 40 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 42 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -72.37 353.24 2.49 -69.88 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -1.67 Total: 26.60 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.91 Total: 9.01 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -3.43 Total: -128.29 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.05 Total: -23.67 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.73 Total: 46.47 kcal Total: -72.37 2.49 -69.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152674666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.088 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds