Wall clock time and date at job start Tue Mar 31 2020 03:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46810 * 166.72336 * 3 2 1 5 5 N 1.46502 * 109.46720 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00026 * 269.99729 * 5 4 3 7 7 C 1.50695 * 109.47313 * 270.00255 * 6 5 4 8 8 H 1.07996 * 120.00175 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00401 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00475 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99614 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46775 * 90.00491 * 11 9 7 13 13 H 1.48499 * 109.47005 * 210.00141 * 11 9 7 14 14 H 1.48493 * 109.47461 * 330.00771 * 11 9 7 15 15 C 1.34776 * 120.00353 * 89.99932 * 5 4 3 16 16 O 1.21279 * 120.00696 * 179.97438 * 15 5 4 17 17 C 1.50708 * 119.99700 * 359.97438 * 15 5 4 18 18 H 1.09000 * 109.46751 * 320.00151 * 17 15 5 19 19 N 1.46896 * 109.47040 * 199.99878 * 17 15 5 20 20 C 1.53002 * 109.46967 * 79.99705 * 17 15 5 21 21 C 1.53120 * 109.51787 * 184.99882 * 20 17 15 22 22 C 1.53036 * 109.27700 * 182.44145 * 21 20 17 23 23 N 1.46850 * 109.52384 * 59.18090 * 22 21 20 24 24 C 1.46850 * 111.19713 * 298.26187 * 23 22 21 25 25 C 1.53034 * 109.52564 * 61.73898 * 24 23 22 26 26 H 1.08995 * 109.47168 * 46.71961 * 3 2 1 27 27 H 1.09000 * 109.46746 * 286.71987 * 3 2 1 28 28 H 1.09004 * 109.47521 * 60.00100 * 4 3 2 29 29 H 1.09000 * 109.47181 * 299.99384 * 4 3 2 30 30 H 1.09000 * 109.47393 * 30.00165 * 6 5 4 31 31 H 1.09007 * 109.47505 * 150.00039 * 6 5 4 32 32 H 0.96996 * 120.00190 * 180.02562 * 10 9 7 33 33 H 1.00894 * 110.99992 * 299.99715 * 19 17 15 34 34 H 1.00903 * 110.99909 * 63.95374 * 19 17 15 35 35 H 1.08996 * 109.57439 * 305.15632 * 20 17 15 36 36 H 1.08998 * 109.50426 * 62.50502 * 21 20 17 37 37 H 1.08997 * 109.54087 * 302.40327 * 21 20 17 38 38 H 1.08995 * 109.46942 * 179.19622 * 22 21 20 39 39 H 1.08998 * 109.46530 * 299.16948 * 22 21 20 40 40 H 1.00901 * 110.99843 * 62.35267 * 23 22 21 41 41 H 1.09007 * 109.46080 * 301.72331 * 24 23 22 42 42 H 1.09001 * 109.46443 * 181.75774 * 24 23 22 43 43 H 1.09000 * 109.50225 * 180.88431 * 25 24 23 44 44 H 1.08997 * 109.50202 * 60.76419 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4049 -0.3313 5 7 4.5823 1.4056 -0.3307 6 6 5.3141 1.6976 0.9044 7 6 5.5644 3.1805 1.0014 8 1 5.2139 3.8395 0.2209 9 6 6.2420 3.6959 2.0860 10 7 6.4600 4.9900 2.1709 11 14 6.8490 2.5559 3.4357 12 1 8.2226 2.0933 3.1122 13 1 6.8640 3.2846 4.7295 14 1 5.9433 1.3837 3.5382 15 6 5.2569 1.1378 -1.4663 16 8 6.4697 1.1389 -1.4660 17 6 4.5040 0.8369 -2.7367 18 1 3.6411 0.2114 -2.5082 19 7 5.3873 0.1295 -3.6734 20 6 4.0311 2.1462 -3.3715 21 6 3.1610 1.8374 -4.5931 22 6 2.7413 3.1498 -5.2592 23 7 3.9376 3.8989 -5.6646 24 6 4.7649 4.2476 -4.5025 25 6 5.2449 2.9681 -3.8139 26 1 2.9716 -0.7037 -0.7481 27 1 2.9714 -0.2948 0.9842 28 1 2.7537 2.1092 0.4169 29 1 2.7539 1.7004 -1.3155 30 1 4.7249 1.3718 1.7616 31 1 6.2669 1.1681 0.8961 32 1 6.9369 5.3525 2.9338 33 1 6.1953 0.6891 -3.9011 34 1 5.6616 -0.7684 -3.3037 35 1 3.4507 2.7153 -2.6454 36 1 2.2732 1.2890 -4.2784 37 1 3.7287 1.2348 -5.3021 38 1 2.1335 2.9332 -6.1376 39 1 2.1614 3.7456 -4.5544 40 1 4.4725 3.3837 -6.3477 41 1 4.1753 4.8383 -3.8012 42 1 5.6267 4.8283 -4.8313 43 1 5.8459 3.2274 -2.9423 44 1 5.8460 2.3836 -4.5103 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160749909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:09 Heat of formation + Delta-G solvation = -13.417460 kcal Electronic energy + Delta-G solvation = -25004.079407 eV Core-core repulsion = 21569.896984 eV Total energy + Delta-G solvation = -3434.182424 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31362 -38.39105 -37.01133 -35.53654 -34.68108 -32.80429 -31.11926 -30.85966 -30.62169 -28.46505 -25.92587 -24.22142 -23.12864 -22.85949 -21.62693 -19.92134 -18.64085 -17.71727 -16.97574 -16.84441 -16.23287 -16.17674 -15.66183 -14.81048 -14.65995 -14.48984 -14.37433 -13.93052 -13.82217 -13.57893 -13.47051 -13.07908 -12.82718 -12.57026 -12.50201 -12.35508 -12.10723 -11.96703 -11.82797 -11.63214 -11.17693 -11.14148 -11.02546 -10.98300 -10.63728 -10.44273 -10.31030 -10.28131 -9.79550 -9.61989 -8.68529 -8.62242 -8.29969 -8.00642 -6.17862 -4.17811 2.61736 2.71249 3.03949 3.20821 3.26182 3.28865 3.48431 4.06089 4.30188 4.33038 4.52020 4.69002 4.72363 4.86081 4.91230 4.99943 5.04936 5.15040 5.17799 5.26925 5.40723 5.45662 5.49983 5.55683 5.65626 5.82844 5.87329 5.91694 5.93458 6.07079 6.16524 6.29635 6.43110 6.50264 6.77062 7.00905 7.03566 7.09723 7.37068 7.39390 7.47030 7.49217 7.98229 8.34538 8.69072 8.85448 9.41485 10.95186 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.005862 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.785182 B = 4775.708299 C = 5952.163566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.112 3.888 5 N -0.587 5.587 6 C 0.213 3.787 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.074 3.926 10 N -0.894 5.894 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.479 3.521 16 O -0.536 6.536 17 C 0.075 3.925 18 H 0.096 0.904 19 N -0.820 5.820 20 C -0.072 4.072 21 C -0.143 4.143 22 C 0.055 3.945 23 N -0.686 5.686 24 C 0.058 3.942 25 C -0.155 4.155 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.349 0.651 34 H 0.341 0.659 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.338 0.662 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.747 -8.930 -11.318 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.104 4.104 3 C -0.092 4.092 4 C -0.015 4.015 5 N -0.318 5.318 6 C 0.092 3.908 7 C -0.569 4.569 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.532 5.532 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.191 1.191 15 C 0.265 3.735 16 O -0.413 6.413 17 C -0.041 4.041 18 H 0.114 0.886 19 N -0.350 5.350 20 C -0.091 4.091 21 C -0.182 4.182 22 C -0.075 4.075 23 N -0.315 5.315 24 C -0.072 4.072 25 C -0.194 4.194 26 H 0.124 0.876 27 H 0.133 0.867 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.155 0.845 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.640 -8.127 -11.714 16.175 hybrid contribution 1.932 -1.302 2.079 3.122 sum -5.708 -9.429 -9.636 14.640 Atomic orbital electron populations 1.81221 1.12927 1.08403 1.09048 1.29003 0.95008 0.93302 0.93055 1.19886 0.81673 1.01413 1.06248 1.21454 0.81859 0.94160 1.03978 1.47950 1.04908 1.67731 1.11233 1.19736 0.92458 0.97754 0.80843 1.21262 1.37357 0.90494 1.07833 0.90662 1.24853 0.95204 0.94934 0.97887 1.69882 1.41136 1.11511 1.30660 0.86884 0.80090 0.81143 0.81734 1.19971 1.21049 1.19063 1.21718 0.88786 0.77322 0.85721 1.90683 1.13886 1.51783 1.84972 1.21663 0.96487 0.96945 0.89019 0.88635 1.59238 1.24334 1.07637 1.43757 1.21140 0.96983 0.93742 0.97279 1.22226 0.99534 0.98625 0.97842 1.22041 0.93094 0.92728 0.99651 1.60691 1.09411 1.47785 1.13566 1.22002 0.97013 0.96129 0.92018 1.22299 0.97640 0.97372 1.02130 0.87590 0.86668 0.88438 0.89985 0.95101 0.94460 0.92471 0.83523 0.84715 0.90271 0.91888 0.90449 0.91007 0.91153 0.84480 0.90808 0.90732 0.90420 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.17 18.54 42.15 0.78 -5.39 16 2 C 0.21 2.44 15.43 -20.76 -0.32 2.12 16 3 C -0.05 -0.48 5.89 -29.52 -0.17 -0.66 16 4 C 0.11 1.41 4.92 -4.04 -0.02 1.39 16 5 N -0.59 -9.93 2.46 -175.05 -0.43 -10.36 16 6 C 0.21 4.57 4.23 -5.20 -0.02 4.55 16 7 C -0.53 -14.05 9.94 -34.44 -0.34 -14.39 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 11 Si 0.87 20.40 27.47 -169.99 -4.67 15.73 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 15 C 0.48 8.03 6.02 -10.98 -0.07 7.96 16 16 O -0.54 -11.26 15.64 5.56 0.09 -11.18 16 17 C 0.07 0.91 2.08 -68.86 -0.14 0.77 16 18 H 0.10 0.98 6.12 -51.93 -0.32 0.66 16 19 N -0.82 -9.31 8.27 -5.65 -0.05 -9.35 16 20 C -0.07 -0.86 1.73 -90.50 -0.16 -1.02 16 21 C -0.14 -1.42 5.28 -26.65 -0.14 -1.56 16 22 C 0.05 0.55 6.55 -3.83 -0.03 0.52 16 23 N -0.69 -7.47 6.87 -113.81 -0.78 -8.25 16 24 C 0.06 0.72 6.55 -3.83 -0.03 0.69 16 25 C -0.16 -2.05 4.74 -26.65 -0.13 -2.18 16 26 H 0.11 0.80 7.15 -51.93 -0.37 0.43 16 27 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 29 H 0.08 0.91 4.84 -51.93 -0.25 0.66 16 30 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 31 H 0.04 0.87 6.85 -51.92 -0.36 0.52 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.35 4.40 6.56 -39.29 -0.26 4.14 16 34 H 0.34 3.63 9.06 -39.29 -0.36 3.28 16 35 H 0.08 1.03 6.44 -51.93 -0.33 0.70 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.80 7.70 -51.93 -0.40 0.40 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.34 3.29 8.86 -39.29 -0.35 2.94 16 41 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 1.33 7.33 -51.93 -0.38 0.95 16 44 H 0.07 0.84 6.48 -51.93 -0.34 0.50 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -31.88 350.58 -7.29 -39.17 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.62 Total: 9.86 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.66 Total: 0.14 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.30 Total: -59.00 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.88 -7.29 -39.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160749909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.751 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds