Wall clock time and date at job start Tue Mar 31 2020 03:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46810 * 166.72336 * 3 2 1 5 5 N 1.46502 * 109.46720 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00026 * 269.99729 * 5 4 3 7 7 C 1.50695 * 109.47313 * 270.00255 * 6 5 4 8 8 H 1.07996 * 120.00175 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00401 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00475 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99614 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46775 * 90.00491 * 11 9 7 13 13 H 1.48499 * 109.47005 * 210.00141 * 11 9 7 14 14 H 1.48493 * 109.47461 * 330.00771 * 11 9 7 15 15 C 1.34776 * 120.00353 * 89.99932 * 5 4 3 16 16 O 1.21279 * 120.00696 * 179.97438 * 15 5 4 17 17 C 1.50708 * 119.99700 * 359.97438 * 15 5 4 18 18 H 1.09000 * 109.46751 * 320.00151 * 17 15 5 19 19 N 1.46896 * 109.47040 * 199.99878 * 17 15 5 20 20 C 1.53002 * 109.46967 * 79.99705 * 17 15 5 21 21 C 1.53120 * 109.51787 * 184.99882 * 20 17 15 22 22 C 1.53036 * 109.27700 * 182.44145 * 21 20 17 23 23 N 1.46850 * 109.52384 * 59.18090 * 22 21 20 24 24 C 1.46850 * 111.19713 * 298.26187 * 23 22 21 25 25 C 1.53034 * 109.52564 * 61.73898 * 24 23 22 26 26 H 1.08995 * 109.47168 * 46.71961 * 3 2 1 27 27 H 1.09000 * 109.46746 * 286.71987 * 3 2 1 28 28 H 1.09004 * 109.47521 * 60.00100 * 4 3 2 29 29 H 1.09000 * 109.47181 * 299.99384 * 4 3 2 30 30 H 1.09000 * 109.47393 * 30.00165 * 6 5 4 31 31 H 1.09007 * 109.47505 * 150.00039 * 6 5 4 32 32 H 0.96996 * 120.00190 * 180.02562 * 10 9 7 33 33 H 1.00894 * 110.99992 * 299.99715 * 19 17 15 34 34 H 1.00903 * 110.99909 * 63.95374 * 19 17 15 35 35 H 1.08996 * 109.57439 * 305.15632 * 20 17 15 36 36 H 1.08998 * 109.50426 * 62.50502 * 21 20 17 37 37 H 1.08997 * 109.54087 * 302.40327 * 21 20 17 38 38 H 1.08995 * 109.46942 * 179.19622 * 22 21 20 39 39 H 1.08998 * 109.46530 * 299.16948 * 22 21 20 40 40 H 1.00901 * 110.99843 * 62.35267 * 23 22 21 41 41 H 1.09007 * 109.46080 * 301.72331 * 24 23 22 42 42 H 1.09001 * 109.46443 * 181.75774 * 24 23 22 43 43 H 1.09000 * 109.50225 * 180.88431 * 25 24 23 44 44 H 1.08997 * 109.50202 * 60.76419 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4049 -0.3313 5 7 4.5823 1.4056 -0.3307 6 6 5.3141 1.6976 0.9044 7 6 5.5644 3.1805 1.0014 8 1 5.2139 3.8395 0.2209 9 6 6.2420 3.6959 2.0860 10 7 6.4600 4.9900 2.1709 11 14 6.8490 2.5559 3.4357 12 1 8.2226 2.0933 3.1122 13 1 6.8640 3.2846 4.7295 14 1 5.9433 1.3837 3.5382 15 6 5.2569 1.1378 -1.4663 16 8 6.4697 1.1389 -1.4660 17 6 4.5040 0.8369 -2.7367 18 1 3.6411 0.2114 -2.5082 19 7 5.3873 0.1295 -3.6734 20 6 4.0311 2.1462 -3.3715 21 6 3.1610 1.8374 -4.5931 22 6 2.7413 3.1498 -5.2592 23 7 3.9376 3.8989 -5.6646 24 6 4.7649 4.2476 -4.5025 25 6 5.2449 2.9681 -3.8139 26 1 2.9716 -0.7037 -0.7481 27 1 2.9714 -0.2948 0.9842 28 1 2.7537 2.1092 0.4169 29 1 2.7539 1.7004 -1.3155 30 1 4.7249 1.3718 1.7616 31 1 6.2669 1.1681 0.8961 32 1 6.9369 5.3525 2.9338 33 1 6.1953 0.6891 -3.9011 34 1 5.6616 -0.7684 -3.3037 35 1 3.4507 2.7153 -2.6454 36 1 2.2732 1.2890 -4.2784 37 1 3.7287 1.2348 -5.3021 38 1 2.1335 2.9332 -6.1376 39 1 2.1614 3.7456 -4.5544 40 1 4.4725 3.3837 -6.3477 41 1 4.1753 4.8383 -3.8012 42 1 5.6267 4.8283 -4.8313 43 1 5.8459 3.2274 -2.9423 44 1 5.8460 2.3836 -4.5103 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160749909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:09 Heat of formation + Delta-G solvation = -38.686337 kcal Electronic energy + Delta-G solvation = -25005.175148 eV Core-core repulsion = 21569.896984 eV Total energy + Delta-G solvation = -3435.278164 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.51791 -39.47970 -38.06264 -36.82744 -35.77785 -34.73749 -32.37726 -31.78334 -31.61039 -30.09113 -27.15280 -25.33610 -24.56519 -23.85666 -22.90385 -20.93308 -19.91372 -19.15617 -18.44703 -18.10217 -17.41018 -17.20681 -16.82774 -16.22800 -15.78850 -15.60692 -15.49760 -15.11541 -15.06518 -14.72161 -14.50663 -14.41379 -14.17733 -13.82897 -13.65059 -13.58083 -13.33069 -13.14188 -12.97723 -12.78717 -12.72531 -12.42989 -12.11886 -12.03892 -11.99602 -11.93463 -11.71821 -11.46228 -11.32645 -10.96102 -10.79899 -9.72040 -9.49541 -9.24083 -8.30440 -6.35093 1.35185 1.38722 1.46281 1.62951 1.76896 1.83113 2.26897 2.33162 3.03628 3.11062 3.42596 3.49225 3.67858 3.73180 3.89230 3.97845 4.04260 4.05470 4.23967 4.37324 4.44225 4.49815 4.60341 4.61599 4.75911 4.83894 4.89430 4.90436 4.95830 5.01037 5.04436 5.11388 5.18189 5.24684 5.49274 5.51358 5.58899 6.00648 6.10908 6.25819 6.42140 6.56370 6.58749 6.65687 6.68570 7.23959 7.38607 8.86288 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.005862 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.785182 B = 4775.708299 C = 5952.163566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.243 3.757 3 C -0.038 4.038 4 C 0.107 3.893 5 N -0.590 5.590 6 C 0.220 3.780 7 C -0.530 4.530 8 H 0.028 0.972 9 C 0.009 3.991 10 N -0.948 5.948 11 Si 0.943 3.057 12 H -0.279 1.279 13 H -0.283 1.283 14 H -0.228 1.228 15 C 0.474 3.526 16 O -0.585 6.585 17 C 0.088 3.912 18 H 0.130 0.870 19 N -0.807 5.807 20 C -0.071 4.071 21 C -0.130 4.130 22 C 0.053 3.947 23 N -0.686 5.686 24 C 0.063 3.937 25 C -0.147 4.147 26 H 0.138 0.862 27 H 0.130 0.870 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.342 0.658 34 H 0.348 0.652 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.348 0.652 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 -11.931 -12.006 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.075 4.075 3 C -0.079 4.079 4 C -0.018 4.018 5 N -0.320 5.320 6 C 0.098 3.902 7 C -0.569 4.569 8 H 0.047 0.953 9 C -0.188 4.188 10 N -0.588 5.588 11 Si 0.766 3.234 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.151 1.151 15 C 0.261 3.739 16 O -0.465 6.465 17 C -0.028 4.028 18 H 0.147 0.853 19 N -0.336 5.336 20 C -0.091 4.091 21 C -0.169 4.169 22 C -0.076 4.076 23 N -0.315 5.315 24 C -0.067 4.067 25 C -0.187 4.187 26 H 0.156 0.844 27 H 0.147 0.853 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.166 0.834 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.078 -11.166 -12.432 19.017 hybrid contribution 2.377 -0.259 2.190 3.243 sum -6.701 -11.425 -10.242 16.743 Atomic orbital electron populations 1.81267 1.14408 1.09848 1.10789 1.29115 0.94945 0.91871 0.91535 1.19853 0.80220 0.99624 1.08155 1.21617 0.79183 0.96219 1.04770 1.47922 1.06588 1.67450 1.10037 1.19407 0.93033 0.93870 0.83917 1.21568 1.36297 0.92880 1.06158 0.95336 1.25844 0.95566 0.96479 1.00952 1.70058 1.42926 1.13966 1.31869 0.85788 0.79665 0.79998 0.77933 1.20498 1.20921 1.15099 1.22673 0.88483 0.75943 0.86755 1.90656 1.16290 1.53871 1.85723 1.21729 0.96957 0.97591 0.86494 0.85294 1.59276 1.23941 1.07683 1.42744 1.21148 0.96505 0.93243 0.98179 1.22137 0.99618 0.98712 0.96433 1.22117 0.92663 0.92465 1.00394 1.60667 1.09493 1.48563 1.12780 1.21864 0.96971 0.95514 0.92319 1.22192 0.97874 0.98289 1.00296 0.84398 0.85254 0.89828 0.88308 0.92471 0.95899 0.92551 0.84340 0.83866 0.91507 0.89989 0.89987 0.88920 0.92016 0.83399 0.92594 0.90855 0.95301 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.58 18.54 20.01 0.37 -12.21 16 2 C 0.24 4.75 15.43 89.44 1.38 6.13 16 3 C -0.04 -0.57 5.89 28.79 0.17 -0.40 16 4 C 0.11 2.47 4.92 86.38 0.43 2.89 16 5 N -0.59 -19.36 2.46 -826.14 -2.03 -21.39 16 6 C 0.22 9.32 4.23 85.63 0.36 9.69 16 7 C -0.53 -28.99 9.94 25.60 0.25 -28.73 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 C 0.01 0.52 5.47 84.66 0.46 0.99 16 10 N -0.95 -58.43 13.96 21.45 0.30 -58.13 16 11 Si 0.94 42.02 27.47 68.60 1.88 43.91 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.23 -8.71 6.54 99.48 0.65 -8.06 16 15 C 0.47 15.56 6.02 87.66 0.53 16.09 16 16 O -0.59 -24.96 15.64 -3.02 -0.05 -25.00 16 17 C 0.09 1.95 2.08 44.17 0.09 2.04 16 18 H 0.13 2.04 6.12 -2.39 -0.01 2.02 16 19 N -0.81 -16.43 8.27 -171.80 -1.42 -17.85 16 20 C -0.07 -1.62 1.73 -10.71 -0.02 -1.64 16 21 C -0.13 -2.17 5.28 30.65 0.16 -2.01 16 22 C 0.05 0.94 6.55 86.32 0.57 1.50 16 23 N -0.69 -14.02 6.87 -514.00 -3.53 -17.55 16 24 C 0.06 1.60 6.55 86.32 0.57 2.17 16 25 C -0.15 -3.98 4.74 30.65 0.15 -3.83 16 26 H 0.14 1.32 7.15 -2.39 -0.02 1.30 16 27 H 0.13 1.74 8.14 -2.39 -0.02 1.73 16 28 H 0.08 2.20 8.07 -2.38 -0.02 2.18 16 29 H 0.10 1.95 4.84 -2.39 -0.01 1.94 16 30 H 0.06 2.14 7.13 -2.39 -0.02 2.12 16 31 H 0.02 1.05 6.85 -2.38 -0.02 1.04 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.34 8.22 6.56 -89.70 -0.59 7.63 16 34 H 0.35 6.46 9.06 -89.69 -0.81 5.65 16 35 H 0.07 1.70 6.44 -2.39 -0.02 1.68 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.37 7.70 -2.39 -0.02 1.35 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.35 6.09 8.86 -89.69 -0.79 5.29 16 41 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.03 1.05 7.33 -2.39 -0.02 1.04 16 44 H 0.08 1.90 6.48 -2.39 -0.02 1.88 16 Total: -1.00 -74.35 350.58 -0.58 -74.93 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -1.20 Total: 28.43 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 5.09 Total: 4.89 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -6.31 Total: -127.14 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.05 Total: -25.00 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.91 kcal Total: -74.35 -0.58 -74.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160749909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.242 kcal (2) G-P(sol) polarization free energy of solvation -74.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds