Wall clock time and date at job start Tue Mar 31 2020 03:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46656 * 132.47535 * 3 2 1 5 5 N 1.46506 * 109.46592 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99915 * 269.99764 * 5 4 3 7 7 C 1.50708 * 109.47200 * 270.00546 * 6 5 4 8 8 H 1.07998 * 119.99654 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00020 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99954 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00054 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47547 * 89.99722 * 11 9 7 13 13 H 1.48497 * 109.47202 * 209.99996 * 11 9 7 14 14 H 1.48508 * 109.46991 * 329.99747 * 11 9 7 15 15 C 1.34773 * 119.99956 * 90.00442 * 5 4 3 16 16 O 1.21290 * 119.99825 * 179.97438 * 15 5 4 17 17 C 1.50693 * 120.00206 * 359.97438 * 15 5 4 18 18 N 1.46902 * 109.47589 * 180.02562 * 17 15 5 19 19 C 1.46895 * 111.00177 * 179.97438 * 18 17 15 20 20 C 1.53118 * 109.52171 * 155.00286 * 19 18 17 21 21 C 1.53034 * 109.28068 * 177.55761 * 20 19 18 22 22 N 1.46848 * 109.52504 * 300.82023 * 21 20 19 23 23 C 1.46847 * 111.19556 * 61.74015 * 22 21 20 24 24 C 1.53044 * 109.52516 * 298.25761 * 23 22 21 25 25 H 1.09001 * 109.47314 * 12.47767 * 3 2 1 26 26 H 1.08999 * 109.46951 * 252.47362 * 3 2 1 27 27 H 1.08994 * 109.47299 * 60.00421 * 4 3 2 28 28 H 1.08999 * 109.47299 * 299.99614 * 4 3 2 29 29 H 1.09001 * 109.47278 * 30.00499 * 6 5 4 30 30 H 1.08998 * 109.47109 * 150.00300 * 6 5 4 31 31 H 0.96999 * 120.00290 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.47402 * 60.00373 * 17 15 5 33 33 H 1.09003 * 109.47131 * 300.00110 * 17 15 5 34 34 H 1.00903 * 110.99150 * 56.04414 * 18 17 15 35 35 H 1.08992 * 109.57428 * 34.84370 * 19 18 17 36 36 H 1.09001 * 109.50624 * 57.61783 * 20 19 18 37 37 H 1.08998 * 109.50047 * 297.50239 * 20 19 18 38 38 H 1.09000 * 109.46341 * 180.80474 * 21 20 19 39 39 H 1.08999 * 109.46274 * 60.83372 * 21 20 19 40 40 H 1.00901 * 111.00066 * 185.83397 * 22 21 20 41 41 H 1.08999 * 109.46628 * 58.27319 * 23 22 21 42 42 H 1.09003 * 109.46158 * 178.24166 * 23 22 21 43 43 H 1.08996 * 109.50067 * 299.23984 * 24 23 22 44 44 H 1.08993 * 109.50192 * 179.12052 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1175 0.9750 -1.0640 5 7 4.5826 0.9761 -1.0636 6 6 5.3141 1.9126 -0.2068 7 6 5.5644 3.1931 -0.9611 8 1 5.2140 3.2985 -1.9772 9 6 6.2417 4.2295 -0.3543 10 7 6.6688 4.1009 0.8829 11 14 6.5526 5.8163 -1.2895 12 1 5.4222 6.7528 -1.0651 13 1 7.8125 6.4366 -0.8069 14 1 6.6702 5.5210 -2.7402 15 6 5.2573 0.1157 -1.8515 16 8 6.4702 0.1169 -1.8514 17 6 4.5049 -0.8479 -2.7325 18 7 5.4602 -1.6712 -3.4858 19 6 4.7609 -2.6250 -4.3570 20 6 5.6672 -3.0049 -5.5313 21 6 4.9573 -4.0443 -6.4017 22 7 4.6482 -5.2316 -5.5947 23 6 3.7410 -4.9001 -4.4885 24 6 4.4146 -3.8862 -3.5609 25 1 2.9719 -1.0026 -0.2220 26 1 2.9712 0.3103 0.9800 27 1 2.7538 1.9782 -0.8420 28 1 2.7544 0.6654 -2.0440 29 1 4.7246 2.1256 0.6850 30 1 6.2668 1.4703 0.0845 31 1 7.1449 4.8302 1.3099 32 1 3.8777 -0.2904 -3.4281 33 1 3.8788 -1.4919 -2.1149 34 1 6.0953 -2.1485 -2.8637 35 1 3.8455 -2.1704 -4.7356 36 1 6.5990 -3.4238 -5.1512 37 1 5.8826 -2.1176 -6.1266 38 1 5.6058 -4.3275 -7.2308 39 1 4.0325 -3.6201 -6.7926 40 1 4.2655 -5.9686 -6.1677 41 1 2.8219 -4.4718 -4.8884 42 1 3.5060 -5.8050 -3.9281 43 1 5.3266 -4.3190 -3.1498 44 1 3.7350 -3.6287 -2.7486 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160749996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:24 Heat of formation + Delta-G solvation = -9.262124 kcal Electronic energy + Delta-G solvation = -23714.380114 eV Core-core repulsion = 20280.377879 eV Total energy + Delta-G solvation = -3434.002235 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.57529 -38.75970 -36.88973 -35.45739 -34.97251 -32.88256 -31.06480 -30.86306 -30.69397 -27.81763 -25.74804 -24.01204 -23.20094 -22.91096 -22.06175 -20.16878 -18.52034 -17.66923 -17.08174 -16.48602 -16.39110 -15.96382 -15.20311 -14.87402 -14.83423 -14.66014 -14.43526 -14.10056 -13.83548 -13.76178 -13.45606 -13.07256 -12.79079 -12.60777 -12.44933 -12.39817 -12.11124 -11.90443 -11.71122 -11.46909 -11.34653 -11.25516 -11.00161 -10.88848 -10.80170 -10.66251 -10.58446 -10.17631 -9.69408 -8.99913 -8.77493 -8.46121 -8.30827 -7.83078 -6.07684 -4.12029 2.69699 2.77601 3.29187 3.30764 3.37217 3.42208 3.55293 3.91995 4.01822 4.32915 4.44446 4.60922 4.67647 4.87943 4.94322 5.00822 5.07498 5.10227 5.16098 5.26147 5.28342 5.30871 5.39126 5.45823 5.47245 5.56509 5.58515 5.74002 5.80949 5.86509 6.02095 6.05741 6.17636 6.72444 6.83052 7.05018 7.06556 7.36105 7.42340 7.44666 7.54037 7.88764 8.18596 8.27384 8.86088 9.01291 9.53573 11.00460 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.003887 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.056123 B = 7201.340845 C = 8703.252916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C -0.050 4.050 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.246 3.754 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.506 3.494 16 O -0.518 6.518 17 C 0.039 3.961 18 N -0.666 5.666 19 C 0.088 3.912 20 C -0.105 4.105 21 C 0.058 3.942 22 N -0.691 5.691 23 C 0.062 3.938 24 C -0.150 4.150 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.352 0.648 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.029 0.971 40 H 0.341 0.659 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.223 -16.551 -9.062 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.008 4.008 5 N -0.332 5.332 6 C 0.127 3.873 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.292 3.708 16 O -0.393 6.393 17 C -0.094 4.094 18 N -0.297 5.297 19 C -0.022 4.022 20 C -0.144 4.144 21 C -0.072 4.072 22 N -0.323 5.323 23 C -0.068 4.068 24 C -0.189 4.189 25 H 0.122 0.878 26 H 0.136 0.864 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.172 0.828 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.158 0.842 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.469 -15.882 -9.002 19.725 hybrid contribution -0.693 0.462 -0.194 0.855 sum -8.162 -15.420 -9.196 19.722 Atomic orbital electron populations 1.81211 1.13045 1.09024 1.09023 1.29122 0.95116 0.92917 0.92955 1.19913 0.81309 1.03363 1.04606 1.21285 0.82418 1.00055 0.97084 1.48217 1.04697 1.36826 1.43428 1.19333 0.92587 0.86655 0.88728 1.21428 1.36677 0.98587 0.99965 0.92360 1.24916 0.95285 0.98842 0.94959 1.69918 1.38376 1.32859 1.12178 0.86513 0.77669 0.83101 0.80257 1.20700 1.21112 1.19835 1.20246 0.88256 0.81642 0.80697 1.90703 1.13616 1.69751 1.65234 1.21968 0.94888 0.95873 0.96653 1.60203 1.18280 1.25534 1.25700 1.21635 0.96642 0.90179 0.93750 1.21554 0.99016 0.97851 0.95953 1.21957 0.98910 0.90788 0.95534 1.60278 1.48282 1.10104 1.13590 1.21838 0.93146 0.98778 0.93001 1.22378 1.01650 0.96559 0.98327 0.87771 0.86447 0.88745 0.90788 0.94802 0.93587 0.92694 0.88713 0.93096 0.82777 0.90925 0.90874 0.90682 0.90615 0.95312 0.84166 0.95287 0.90916 0.90677 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.44 18.54 42.16 0.78 -5.66 16 2 C 0.22 2.56 15.43 -20.76 -0.32 2.24 16 3 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 4 C 0.12 1.54 5.17 -4.04 -0.02 1.52 16 5 N -0.60 -10.81 2.46 -175.05 -0.43 -11.24 16 6 C 0.25 5.80 5.16 -5.19 -0.03 5.77 16 7 C -0.53 -14.15 9.39 -34.43 -0.32 -14.48 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 11 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.51 9.23 7.71 -10.99 -0.08 9.14 16 16 O -0.52 -12.03 15.78 5.55 0.09 -11.94 16 17 C 0.04 0.50 4.52 -4.98 -0.02 0.48 16 18 N -0.67 -8.71 5.88 -107.87 -0.63 -9.35 16 19 C 0.09 0.90 2.53 -67.59 -0.17 0.73 16 20 C -0.11 -1.05 5.70 -26.65 -0.15 -1.20 16 21 C 0.06 0.47 6.55 -3.83 -0.03 0.45 16 22 N -0.69 -5.55 6.85 -113.81 -0.78 -6.33 16 23 C 0.06 0.49 6.55 -3.83 -0.03 0.47 16 24 C -0.15 -1.33 5.35 -26.65 -0.14 -1.48 16 25 H 0.10 0.85 7.22 -51.93 -0.37 0.47 16 26 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 28 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 29 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.09 1.14 7.32 -51.93 -0.38 0.76 16 33 H 0.05 0.52 6.55 -51.93 -0.34 0.18 16 34 H 0.35 4.81 8.14 -39.29 -0.32 4.49 16 35 H 0.07 0.73 7.80 -51.93 -0.41 0.33 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.34 2.12 8.90 -39.29 -0.35 1.77 16 41 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 44 H 0.06 0.54 7.54 -51.93 -0.39 0.15 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -32.80 363.89 -8.41 -41.21 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.04 Total: 1.76 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.59 Total: 4.57 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.33 Total: -57.43 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.80 -8.41 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160749996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.946 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds