Wall clock time and date at job start Tue Mar 31 2020 03:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 C 1.53000 * 109.46953 * 265.30838 * 8 7 6 10 10 C 1.50700 * 109.46953 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00391 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00087 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00381 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47029 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46841 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47107 * 180.02562 * 15 14 13 17 17 C 1.36942 * 120.00000 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99877 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99971 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00132 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99991 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47195 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47122 * 119.99807 * 21 19 17 24 24 H 1.48501 * 109.46958 * 239.99511 * 21 19 17 25 25 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 26 26 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 27 27 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 28 28 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 29 29 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 30 30 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 31 31 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 32 32 H 1.09003 * 109.47210 * 25.30474 * 8 7 6 33 33 H 1.09000 * 109.47322 * 145.30308 * 8 7 6 34 34 H 1.09003 * 109.46866 * 299.99847 * 9 8 7 35 35 H 1.08995 * 109.47118 * 59.99745 * 9 8 7 36 36 H 0.97004 * 119.99573 * 0.02562 * 12 10 9 37 37 H 1.08994 * 109.47083 * 300.00454 * 13 12 10 38 38 H 1.09005 * 109.46576 * 60.00167 * 13 12 10 39 39 H 1.08994 * 109.47477 * 300.00113 * 14 13 12 40 40 H 1.08999 * 109.46965 * 60.00705 * 14 13 12 41 41 H 1.09003 * 109.47264 * 300.00052 * 15 14 13 42 42 H 1.09000 * 109.47163 * 59.99822 * 15 14 13 43 43 H 0.96998 * 119.99978 * 0.02562 * 16 15 14 44 44 H 0.96998 * 120.00073 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 6 1.5818 -3.0113 -1.4377 10 6 1.1151 -4.4443 -1.4379 11 8 1.0153 -5.0497 -0.3917 12 7 0.8087 -5.0531 -2.6006 13 6 0.3556 -6.4463 -2.6009 14 6 0.0773 -6.8917 -4.0379 15 6 -0.3965 -8.3465 -4.0381 16 7 -0.6623 -8.7733 -5.4141 17 6 -1.1005 -10.0466 -5.6635 18 1 -1.2498 -10.7362 -4.8457 19 6 -1.3519 -10.4511 -6.9672 20 7 -1.1696 -9.6109 -7.9638 21 14 -1.9490 -12.1881 -7.3075 22 1 -2.0722 -12.9291 -6.0265 23 1 -3.2730 -12.1340 -7.9780 24 1 -0.9759 -12.8823 -8.1887 25 1 -0.3633 0.0004 -1.0276 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 5.0836 1.7155 1.0262 29 1 5.6089 0.9983 -0.5158 30 1 4.5560 2.4334 -0.5147 31 1 4.4892 -1.3485 -0.0129 32 1 2.6329 -3.2001 0.4332 33 1 0.9471 -2.6503 0.5891 34 1 0.8087 -2.3770 -1.8716 35 1 2.4945 -2.9267 -2.0274 36 1 0.8889 -4.5690 -3.4374 37 1 1.1293 -7.0800 -2.1677 38 1 -0.5568 -6.5316 -2.0105 39 1 -0.6962 -6.2580 -4.4715 40 1 0.9899 -6.8064 -4.6278 41 1 0.3768 -8.9806 -3.6044 42 1 -1.3091 -8.4315 -3.4482 43 1 -0.5279 -8.1541 -6.1484 44 1 -1.3449 -9.8937 -8.8749 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167578345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:58 Heat of formation + Delta-G solvation = 30.796442 kcal Electronic energy + Delta-G solvation = -22065.190934 eV Core-core repulsion = 18632.925769 eV Total energy + Delta-G solvation = -3432.265165 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.59145 -39.65615 -36.09364 -34.93211 -34.30187 -33.25629 -31.96364 -30.39274 -29.76336 -28.99276 -26.34869 -25.15368 -23.73351 -22.37761 -21.19202 -21.00043 -20.13697 -19.68531 -17.37905 -16.99129 -16.53258 -16.01584 -15.93893 -15.73548 -15.02590 -14.58707 -14.48844 -14.05813 -13.93522 -13.65511 -13.33446 -13.27954 -13.08865 -12.90309 -12.69621 -12.45276 -12.39765 -12.21751 -12.09561 -11.61568 -11.27790 -10.94726 -10.92344 -10.77114 -10.68973 -10.61224 -10.06115 -9.84746 -9.68762 -9.51903 -9.00444 -8.88316 -8.61907 -6.93212 -5.77365 -3.06196 1.55365 2.17294 2.40835 2.66167 3.25552 3.43714 3.49541 3.51815 4.11433 4.45059 4.59217 4.64354 4.67308 4.70660 4.88792 4.95513 4.96323 4.98874 5.14786 5.29586 5.33296 5.35746 5.41113 5.45361 5.57833 5.62540 5.65147 5.73147 5.96749 6.02157 6.02863 6.08701 6.20474 6.33063 6.40778 6.50922 6.68481 6.79914 6.84146 7.42111 7.52249 7.70839 8.24323 8.41713 9.52884 10.10165 10.44793 11.45741 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.038340 B = 0.001827 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.132116 B =15325.144805 C =15424.774235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.080 3.920 3 N -0.300 5.300 4 N -0.380 5.380 5 C 0.103 3.897 6 C 0.058 3.942 7 C -0.233 4.233 8 C -0.023 4.023 9 C -0.134 4.134 10 C 0.509 3.491 11 O -0.545 6.545 12 N -0.730 5.730 13 C 0.122 3.878 14 C -0.137 4.137 15 C 0.156 3.844 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.072 0.928 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.400 0.600 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.077 23.743 16.096 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 N -0.123 5.123 4 N -0.161 5.161 5 C -0.038 4.038 6 C -0.088 4.088 7 C -0.244 4.244 8 C -0.062 4.062 9 C -0.175 4.175 10 C 0.295 3.705 11 O -0.422 6.422 12 N -0.381 5.381 13 C -0.002 4.002 14 C -0.176 4.176 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.090 0.910 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.219 1.219 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.190 0.810 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.234 0.766 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.143 24.494 16.891 31.771 hybrid contribution -0.019 -1.342 -1.068 1.715 sum 11.124 23.152 15.823 30.168 Atomic orbital electron populations 1.20217 0.86637 1.03460 1.03135 1.22290 0.96934 0.90267 0.99162 1.77308 0.86433 1.22834 1.25751 1.48343 1.05536 1.04785 1.57437 1.21839 0.83636 0.95038 1.03315 1.22371 0.99333 0.84838 1.02280 1.19996 0.91748 0.96261 1.16397 1.19558 1.02309 0.89513 0.94780 1.21679 1.03089 0.92852 0.99835 1.20752 0.77113 0.89008 0.83609 1.90702 1.53099 1.66962 1.31466 1.46141 1.68308 1.14510 1.09166 1.21344 0.99958 0.80973 0.97923 1.21941 1.02018 0.98961 0.94647 1.20528 0.97111 0.90744 0.88847 1.42349 1.80671 1.13123 1.01679 1.19305 1.36290 0.89193 0.92257 0.91016 1.24755 1.02531 0.98234 0.95607 1.69670 1.55521 1.34550 0.98593 0.86092 0.78039 0.84150 0.77781 1.20499 1.21842 1.21861 0.90385 0.90136 0.90974 0.90832 0.89457 0.89365 0.80957 0.90676 0.90366 0.88955 0.89138 0.76560 0.91472 0.91419 0.91322 0.91357 0.96074 0.96037 0.78314 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.26 36.00 0.37 -0.19 16 2 C 0.08 0.78 7.22 -82.40 -0.59 0.19 16 3 N -0.30 -3.29 12.57 33.67 0.42 -2.87 16 4 N -0.38 -3.21 4.01 -68.16 -0.27 -3.49 16 5 C 0.10 0.43 11.47 59.85 0.69 1.12 16 6 C 0.06 0.45 11.40 -17.22 -0.20 0.25 16 7 C -0.23 -2.09 5.35 -105.05 -0.56 -2.65 16 8 C -0.02 -0.20 4.76 -27.88 -0.13 -0.33 16 9 C -0.13 -1.11 5.68 -27.88 -0.16 -1.26 16 10 C 0.51 5.99 7.83 -10.98 -0.09 5.91 16 11 O -0.54 -8.57 15.98 5.56 0.09 -8.48 16 12 N -0.73 -8.14 5.56 -60.29 -0.33 -8.48 16 13 C 0.12 1.65 5.67 -4.04 -0.02 1.62 16 14 C -0.14 -2.09 5.44 -26.73 -0.15 -2.24 16 15 C 0.16 3.12 6.26 -4.04 -0.03 3.09 16 16 N -0.73 -18.73 5.60 -59.91 -0.34 -19.06 16 17 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 18 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 21 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.53 7.37 -51.93 -0.38 0.15 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.08 0.75 7.37 -51.93 -0.38 0.37 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 3.48 8.47 -40.82 -0.35 3.13 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.38 10.16 7.67 -40.82 -0.31 9.84 16 44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -36.14 373.52 -7.53 -43.67 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.31 Total: 5.18 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.11 Total: -1.97 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.20 Total: -61.53 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.14 -7.53 -43.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167578345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.464 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds