Wall clock time and date at job start Tue Mar 31 2020 03:38:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46501 * 109.46973 * 2 1
4 4 N 1.39931 * 125.75135 * 269.97529 * 3 2 1
5 5 C 1.30449 * 108.89399 * 179.77739 * 4 3 2
6 6 C 1.50703 * 125.98936 * 180.26413 * 5 4 3
7 7 C 1.41292 * 108.02576 * 0.37804 * 5 4 3
8 8 C 1.47425 * 126.41658 * 179.88269 * 7 5 4
9 9 O 1.21603 * 120.00000 * 269.68993 * 8 7 5
10 10 N 1.34777 * 119.99743 * 89.68684 * 8 7 5
11 11 C 1.46499 * 119.99665 * 179.72398 * 10 8 7
12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8
13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10
14 14 N 1.46506 * 109.46748 * 180.02562 * 13 12 11
15 15 C 1.36939 * 119.99838 * 180.02562 * 14 13 12
16 16 H 1.08001 * 119.99927 * 0.02562 * 15 14 13
17 17 C 1.38815 * 119.99976 * 179.97438 * 15 14 13
18 18 N 1.31612 * 120.00037 * 0.02562 * 17 15 14
19 19 Si 1.86803 * 119.99973 * 179.97438 * 17 15 14
20 20 H 1.48496 * 109.46933 * 0.02562 * 19 17 15
21 21 H 1.48500 * 109.46921 * 120.00143 * 19 17 15
22 22 H 1.48498 * 109.46946 * 240.00460 * 19 17 15
23 23 C 1.34263 * 125.75436 * 89.99823 * 3 2 1
24 24 C 1.50698 * 126.29124 * 359.95534 * 23 3 2
25 25 H 1.09006 * 109.46817 * 179.97438 * 1 2 3
26 26 H 1.09001 * 109.47486 * 300.00021 * 1 2 3
27 27 H 1.08998 * 109.47053 * 60.00630 * 1 2 3
28 28 H 1.08997 * 109.47464 * 239.99490 * 2 1 3
29 29 H 1.09007 * 109.46908 * 119.99944 * 2 1 3
30 30 H 1.09004 * 109.46577 * 270.13763 * 6 5 4
31 31 H 1.09008 * 109.47034 * 30.13334 * 6 5 4
32 32 H 1.08999 * 109.47402 * 150.13588 * 6 5 4
33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7
34 34 H 1.09009 * 109.47454 * 300.27637 * 11 10 8
35 35 H 1.08998 * 109.47492 * 60.27932 * 11 10 8
36 36 H 1.08995 * 109.46638 * 300.00121 * 12 11 10
37 37 H 1.09006 * 109.47139 * 60.00254 * 12 11 10
38 38 H 1.08995 * 109.47672 * 299.99669 * 13 12 11
39 39 H 1.09007 * 109.47288 * 60.00489 * 13 12 11
40 40 H 0.96992 * 119.99973 * 359.97438 * 14 13 12
41 41 H 0.97003 * 120.00466 * 180.02562 * 18 17 15
42 42 H 1.09000 * 109.47190 * 270.02928 * 24 23 3
43 43 H 1.09005 * 109.47100 * 30.02634 * 24 23 3
44 44 H 1.08996 * 109.47266 * 150.02453 * 24 23 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 7 2.2913 2.1519 -1.1356
5 6 2.7027 3.3306 -0.7573
6 6 3.0965 4.4653 -1.6675
7 6 2.7170 3.3561 0.6553
8 6 3.1177 4.4914 1.5061
9 8 4.2759 4.6086 1.8579
10 7 2.2005 5.3996 1.8939
11 6 2.5975 6.5244 2.7443
12 6 1.3751 7.3951 3.0420
13 6 1.7897 8.5695 3.9307
14 7 0.6190 9.4028 4.2162
15 6 0.7478 10.5196 4.9981
16 1 1.7125 10.7863 5.4040
17 6 -0.3613 11.3095 5.2682
18 7 -1.5367 10.9848 4.7732
19 14 -0.1856 12.8325 6.3355
20 1 1.2286 12.9756 6.7650
21 1 -0.5899 14.0312 5.5577
22 1 -1.0559 12.7018 7.5316
23 6 2.2798 2.1209 1.0896
24 6 2.1240 1.6833 2.5232
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5138 0.8900
27 1 -0.3633 0.5137 -0.8900
28 1 1.8934 -0.5139 -0.8899
29 1 1.8933 -0.5139 0.8901
30 1 4.1614 4.3992 -1.8906
31 1 2.5265 4.4022 -2.5945
32 1 2.8865 5.4152 -1.1758
33 1 1.2766 5.3060 1.6136
34 1 3.0098 6.1452 3.6795
35 1 3.3515 7.1204 2.2301
36 1 0.9628 7.7743 2.1070
37 1 0.6211 6.7992 3.5564
38 1 2.2017 8.1900 4.8657
39 1 2.5438 9.1656 3.4167
40 1 -0.2471 9.1639 3.8508
41 1 -2.3117 11.5369 4.9616
42 1 1.1176 1.9204 2.8682
43 1 2.2887 0.6081 2.5948
44 1 2.8530 2.2046 3.1435
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001168540098.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:38:26
Heat of formation + Delta-G solvation = 30.912929 kcal
Electronic energy + Delta-G solvation = -22944.004354 eV
Core-core repulsion = 19511.744240 eV
Total energy + Delta-G solvation = -3432.260114 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.72547 -39.18583 -35.96063 -35.30602 -34.25706 -32.79134 -31.95605 -31.12174
-29.58274 -28.09881 -27.49166 -25.31485 -23.88104 -22.72149 -21.63079 -21.13771
-19.79737 -19.62839 -17.63940 -16.96232 -16.52889 -16.02627 -15.52306 -15.44401
-14.86272 -14.57329 -14.37565 -13.92452 -13.76673 -13.63068 -13.48477 -13.30245
-13.26657 -12.97338 -12.77811 -12.60146 -12.38577 -12.21737 -12.13056 -11.76862
-11.62757 -10.99817 -10.92532 -10.90268 -10.77106 -10.59783 -10.06902 -9.87915
-9.68769 -9.42221 -8.98035 -8.87593 -8.72771 -6.92496 -5.76686 -3.05407
1.44747 2.04352 2.26272 2.61400 3.37273 3.44104 3.50016 3.52198
4.06830 4.19113 4.46079 4.50206 4.59547 4.60219 4.73920 4.96392
5.02747 5.09039 5.11114 5.20522 5.23688 5.34094 5.42828 5.45201
5.52589 5.58721 5.59461 5.66248 5.67715 5.77339 6.03256 6.09843
6.21536 6.30564 6.34518 6.52662 6.62911 6.81227 6.85385 7.41484
7.57040 7.71501 8.28085 8.42388 9.53560 10.10994 10.45604 11.46453
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.024769 B = 0.002420 C = 0.002357
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1130.168403 B =11569.052508 C =11877.211780
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.125 3.875
3 N -0.359 5.359
4 N -0.298 5.298
5 C 0.114 3.886
6 C -0.077 4.077
7 C -0.285 4.285
8 C 0.597 3.403
9 O -0.538 6.538
10 N -0.719 5.719
11 C 0.122 3.878
12 C -0.137 4.137
13 C 0.156 3.844
14 N -0.734 5.734
15 C -0.238 4.238
16 H 0.072 0.928
17 C -0.016 4.016
18 N -0.935 5.935
19 Si 0.908 3.092
20 H -0.280 1.280
21 H -0.291 1.291
22 H -0.291 1.291
23 C 0.128 3.872
24 C -0.099 4.099
25 H 0.078 0.922
26 H 0.063 0.937
27 H 0.067 0.933
28 H 0.097 0.903
29 H 0.094 0.906
30 H 0.081 0.919
31 H 0.077 0.923
32 H 0.079 0.921
33 H 0.401 0.599
34 H 0.068 0.932
35 H 0.069 0.931
36 H 0.069 0.931
37 H 0.068 0.932
38 H 0.022 0.978
39 H 0.022 0.978
40 H 0.383 0.617
41 H 0.254 0.746
42 H 0.088 0.912
43 H 0.076 0.924
44 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.067 -24.674 -11.022 27.495
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.005 3.995
3 N -0.139 5.139
4 N -0.119 5.119
5 C -0.053 4.053
6 C -0.136 4.136
7 C -0.300 4.300
8 C 0.381 3.619
9 O -0.415 6.415
10 N -0.370 5.370
11 C -0.002 4.002
12 C -0.176 4.176
13 C 0.028 3.972
14 N -0.378 5.378
15 C -0.369 4.369
16 H 0.090 0.910
17 C -0.212 4.212
18 N -0.584 5.584
19 Si 0.739 3.261
20 H -0.205 1.205
21 H -0.219 1.219
22 H -0.219 1.219
23 C -0.003 4.003
24 C -0.157 4.157
25 H 0.097 0.903
26 H 0.082 0.918
27 H 0.086 0.914
28 H 0.116 0.884
29 H 0.113 0.887
30 H 0.100 0.900
31 H 0.096 0.904
32 H 0.098 0.902
33 H 0.235 0.765
34 H 0.087 0.913
35 H 0.087 0.913
36 H 0.087 0.913
37 H 0.086 0.914
38 H 0.039 0.961
39 H 0.040 0.960
40 H 0.217 0.783
41 H 0.064 0.936
42 H 0.106 0.894
43 H 0.094 0.906
44 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 5.679 -25.352 -11.653 28.474
hybrid contribution -0.627 1.139 0.996 1.638
sum 5.051 -24.213 -10.657 26.933
Atomic orbital electron populations
1.22190 0.93857 1.03288 1.03531 1.21748 0.95531 0.77616 1.04646
1.48339 1.50342 1.12124 1.03103 1.77100 1.23733 1.03905 1.07188
1.22308 0.96759 0.94097 0.92121 1.20261 1.02331 0.93326 0.97650
1.19871 1.20240 0.96096 0.93762 1.17286 0.84914 0.80970 0.78722
1.90783 1.18715 1.75862 1.56106 1.46122 1.12194 1.26483 1.52220
1.21382 0.97793 0.86701 0.94315 1.21942 0.96867 0.97483 1.01260
1.20525 0.91311 0.90034 0.95315 1.42354 1.06237 1.28250 1.61001
1.19298 0.94557 1.00573 1.22508 0.91029 1.24755 0.95522 0.99590
1.01287 1.69667 0.98975 1.40258 1.49454 0.86098 0.77245 0.82938
0.79830 1.20499 1.21853 1.21861 1.21325 0.97091 0.90837 0.91024
1.20581 1.04312 1.02336 0.88492 0.90286 0.91792 0.91415 0.88431
0.88749 0.90001 0.90377 0.90211 0.76477 0.91340 0.91264 0.91275
0.91353 0.96052 0.96017 0.78314 0.93571 0.89360 0.90558 0.89153
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.83 10.24 37.16 0.38 -0.45 16
2 C 0.13 0.72 6.93 -4.04 -0.03 0.69 16
3 N -0.36 -3.54 3.58 -56.60 -0.20 -3.74 16
4 N -0.30 -3.61 12.50 33.90 0.42 -3.19 16
5 C 0.11 1.38 7.26 -82.02 -0.60 0.79 16
6 C -0.08 -0.75 10.28 36.01 0.37 -0.38 16
7 C -0.28 -3.55 5.88 -105.07 -0.62 -4.17 16
8 C 0.60 8.32 6.97 -12.52 -0.09 8.23 16
9 O -0.54 -9.50 17.11 5.27 0.09 -9.41 16
10 N -0.72 -8.83 5.55 -61.38 -0.34 -9.17 16
11 C 0.12 1.67 5.67 -4.04 -0.02 1.65 16
12 C -0.14 -2.10 5.44 -26.73 -0.15 -2.24 16
13 C 0.16 3.11 6.26 -4.04 -0.03 3.09 16
14 N -0.73 -18.71 5.60 -59.90 -0.34 -19.04 16
15 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16
16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16
17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16
18 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16
19 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16
20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
23 C 0.13 1.32 7.01 -81.60 -0.57 0.75 16
24 C -0.10 -0.72 9.93 36.00 0.36 -0.36 16
25 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16
26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
28 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16
29 H 0.09 0.33 7.02 -51.93 -0.36 -0.03 16
30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
31 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16
32 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16
33 H 0.40 4.18 8.46 -40.82 -0.35 3.84 16
34 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16
35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16
38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
40 H 0.38 10.16 7.67 -40.82 -0.31 9.84 16
41 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16
42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16
43 H 0.08 0.37 7.05 -51.93 -0.37 0.01 16
44 H 0.09 0.76 7.96 -51.93 -0.41 0.35 16
LS Contribution 373.79 15.07 5.63 5.63
Total: -1.00 -35.55 373.79 -7.52 -43.08
By element:
Atomic # 1 Polarization: 13.09 SS G_CDS: -7.26 Total: 5.83 kcal
Atomic # 6 Polarization: 1.39 SS G_CDS: -1.23 Total: 0.16 kcal
Atomic # 7 Polarization: -63.06 SS G_CDS: 0.27 Total: -62.79 kcal
Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal
Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -35.55 -7.52 -43.08 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001168540098.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.992 kcal
(2) G-P(sol) polarization free energy of solvation -35.555 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.437 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.913 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds