Wall clock time and date at job start Tue Mar 31 2020 03:38:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46501 * 109.46973 * 2 1
4 4 N 1.39931 * 125.75135 * 269.97529 * 3 2 1
5 5 C 1.30449 * 108.89399 * 179.77739 * 4 3 2
6 6 C 1.50703 * 125.98936 * 180.26413 * 5 4 3
7 7 C 1.41292 * 108.02576 * 0.37804 * 5 4 3
8 8 C 1.47425 * 126.41658 * 179.88269 * 7 5 4
9 9 O 1.21603 * 120.00000 * 269.68993 * 8 7 5
10 10 N 1.34777 * 119.99743 * 89.68684 * 8 7 5
11 11 C 1.46499 * 119.99665 * 179.72398 * 10 8 7
12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8
13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10
14 14 N 1.46506 * 109.46748 * 180.02562 * 13 12 11
15 15 C 1.36939 * 119.99838 * 180.02562 * 14 13 12
16 16 H 1.08001 * 119.99927 * 0.02562 * 15 14 13
17 17 C 1.38815 * 119.99976 * 179.97438 * 15 14 13
18 18 N 1.31612 * 120.00037 * 0.02562 * 17 15 14
19 19 Si 1.86803 * 119.99973 * 179.97438 * 17 15 14
20 20 H 1.48496 * 109.46933 * 0.02562 * 19 17 15
21 21 H 1.48500 * 109.46921 * 120.00143 * 19 17 15
22 22 H 1.48498 * 109.46946 * 240.00460 * 19 17 15
23 23 C 1.34263 * 125.75436 * 89.99823 * 3 2 1
24 24 C 1.50698 * 126.29124 * 359.95534 * 23 3 2
25 25 H 1.09006 * 109.46817 * 179.97438 * 1 2 3
26 26 H 1.09001 * 109.47486 * 300.00021 * 1 2 3
27 27 H 1.08998 * 109.47053 * 60.00630 * 1 2 3
28 28 H 1.08997 * 109.47464 * 239.99490 * 2 1 3
29 29 H 1.09007 * 109.46908 * 119.99944 * 2 1 3
30 30 H 1.09004 * 109.46577 * 270.13763 * 6 5 4
31 31 H 1.09008 * 109.47034 * 30.13334 * 6 5 4
32 32 H 1.08999 * 109.47402 * 150.13588 * 6 5 4
33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7
34 34 H 1.09009 * 109.47454 * 300.27637 * 11 10 8
35 35 H 1.08998 * 109.47492 * 60.27932 * 11 10 8
36 36 H 1.08995 * 109.46638 * 300.00121 * 12 11 10
37 37 H 1.09006 * 109.47139 * 60.00254 * 12 11 10
38 38 H 1.08995 * 109.47672 * 299.99669 * 13 12 11
39 39 H 1.09007 * 109.47288 * 60.00489 * 13 12 11
40 40 H 0.96992 * 119.99973 * 359.97438 * 14 13 12
41 41 H 0.97003 * 120.00466 * 180.02562 * 18 17 15
42 42 H 1.09000 * 109.47190 * 270.02928 * 24 23 3
43 43 H 1.09005 * 109.47100 * 30.02634 * 24 23 3
44 44 H 1.08996 * 109.47266 * 150.02453 * 24 23 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 7 2.2913 2.1519 -1.1356
5 6 2.7027 3.3306 -0.7573
6 6 3.0965 4.4653 -1.6675
7 6 2.7170 3.3561 0.6553
8 6 3.1177 4.4914 1.5061
9 8 4.2759 4.6086 1.8579
10 7 2.2005 5.3996 1.8939
11 6 2.5975 6.5244 2.7443
12 6 1.3751 7.3951 3.0420
13 6 1.7897 8.5695 3.9307
14 7 0.6190 9.4028 4.2162
15 6 0.7478 10.5196 4.9981
16 1 1.7125 10.7863 5.4040
17 6 -0.3613 11.3095 5.2682
18 7 -1.5367 10.9848 4.7732
19 14 -0.1856 12.8325 6.3355
20 1 1.2286 12.9756 6.7650
21 1 -0.5899 14.0312 5.5577
22 1 -1.0559 12.7018 7.5316
23 6 2.2798 2.1209 1.0896
24 6 2.1240 1.6833 2.5232
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5138 0.8900
27 1 -0.3633 0.5137 -0.8900
28 1 1.8934 -0.5139 -0.8899
29 1 1.8933 -0.5139 0.8901
30 1 4.1614 4.3992 -1.8906
31 1 2.5265 4.4022 -2.5945
32 1 2.8865 5.4152 -1.1758
33 1 1.2766 5.3060 1.6136
34 1 3.0098 6.1452 3.6795
35 1 3.3515 7.1204 2.2301
36 1 0.9628 7.7743 2.1070
37 1 0.6211 6.7992 3.5564
38 1 2.2017 8.1900 4.8657
39 1 2.5438 9.1656 3.4167
40 1 -0.2471 9.1639 3.8508
41 1 -2.3117 11.5369 4.9616
42 1 1.1176 1.9204 2.8682
43 1 2.2887 0.6081 2.5948
44 1 2.8530 2.2046 3.1435
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001168540098.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:38:25
Heat of formation + Delta-G solvation = 5.813367 kcal
Electronic energy + Delta-G solvation = -22945.092752 eV
Core-core repulsion = 19511.744240 eV
Total energy + Delta-G solvation = -3433.348512 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-42.53358 -40.29612 -37.46973 -35.95702 -35.84709 -33.80242 -33.36834 -31.95309
-31.13206 -28.93967 -28.21765 -26.88743 -24.91710 -24.04357 -22.65159 -22.53619
-20.79295 -20.38700 -19.19198 -18.37691 -17.44067 -17.09496 -16.69531 -16.48093
-16.26500 -15.49752 -15.45424 -15.28600 -15.06483 -14.74749 -14.47238 -14.34276
-14.10976 -13.94984 -13.68662 -13.42837 -13.29647 -13.11282 -12.94396 -12.83501
-12.73780 -12.57536 -12.40758 -12.21794 -12.03644 -12.02733 -11.81229 -11.75627
-11.01658 -10.94453 -10.18837 -10.10423 -9.57415 -9.00569 -7.95743 -5.24687
0.67029 1.35760 1.40283 1.48796 1.49341 1.53722 1.59758 2.31491
2.57715 3.38418 3.42754 3.52091 3.78229 3.87336 4.03056 4.06501
4.10689 4.11489 4.30399 4.31819 4.35556 4.49974 4.59374 4.66997
4.68757 4.73481 4.75134 4.76521 4.81225 4.89368 4.91595 4.98882
5.06893 5.21267 5.30462 5.34266 5.42934 5.49387 5.50578 5.96098
6.27301 6.54218 6.59828 7.22104 7.33654 8.08700 8.32288 9.28084
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.024769 B = 0.002420 C = 0.002357
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1130.168403 B =11569.052508 C =11877.211780
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.114 3.886
3 N -0.355 5.355
4 N -0.322 5.322
5 C 0.102 3.898
6 C -0.076 4.076
7 C -0.317 4.317
8 C 0.605 3.395
9 O -0.580 6.580
10 N -0.707 5.707
11 C 0.133 3.867
12 C -0.118 4.118
13 C 0.152 3.848
14 N -0.747 5.747
15 C -0.246 4.246
16 H 0.076 0.924
17 C -0.076 4.076
18 N -0.969 5.969
19 Si 0.974 3.026
20 H -0.267 1.267
21 H -0.292 1.292
22 H -0.292 1.292
23 C 0.136 3.864
24 C -0.098 4.098
25 H 0.103 0.897
26 H 0.062 0.938
27 H 0.047 0.953
28 H 0.102 0.898
29 H 0.123 0.877
30 H 0.084 0.916
31 H 0.090 0.910
32 H 0.077 0.923
33 H 0.412 0.588
34 H 0.067 0.933
35 H 0.064 0.936
36 H 0.072 0.928
37 H 0.074 0.926
38 H 0.024 0.976
39 H 0.022 0.978
40 H 0.375 0.625
41 H 0.252 0.748
42 H 0.105 0.895
43 H 0.104 0.896
44 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.015 -26.061 -10.628 28.588
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.005 4.005
3 N -0.135 5.135
4 N -0.144 5.144
5 C -0.064 4.064
6 C -0.135 4.135
7 C -0.332 4.332
8 C 0.391 3.609
9 O -0.460 6.460
10 N -0.357 5.357
11 C 0.009 3.991
12 C -0.156 4.156
13 C 0.025 3.975
14 N -0.390 5.390
15 C -0.378 4.378
16 H 0.093 0.907
17 C -0.269 4.269
18 N -0.620 5.620
19 Si 0.803 3.197
20 H -0.191 1.191
21 H -0.219 1.219
22 H -0.219 1.219
23 C 0.003 3.997
24 C -0.156 4.156
25 H 0.122 0.878
26 H 0.081 0.919
27 H 0.066 0.934
28 H 0.121 0.879
29 H 0.141 0.859
30 H 0.102 0.898
31 H 0.108 0.892
32 H 0.096 0.904
33 H 0.248 0.752
34 H 0.085 0.915
35 H 0.082 0.918
36 H 0.091 0.909
37 H 0.093 0.907
38 H 0.042 0.958
39 H 0.040 0.960
40 H 0.207 0.793
41 H 0.061 0.939
42 H 0.123 0.877
43 H 0.123 0.877
44 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 5.630 -26.771 -11.281 29.591
hybrid contribution -0.596 1.458 0.855 1.792
sum 5.034 -25.313 -10.426 27.835
Atomic orbital electron populations
1.22152 0.93057 1.04580 1.02437 1.22179 0.96167 0.75757 1.06362
1.48703 1.49326 1.13075 1.02353 1.77037 1.24522 1.04210 1.08603
1.22611 0.96797 0.94649 0.92366 1.20306 1.02640 0.92667 0.97884
1.19863 1.22805 0.96667 0.93863 1.17448 0.84229 0.81131 0.78115
1.90755 1.20460 1.76919 1.57866 1.45968 1.12643 1.25647 1.51479
1.21152 0.96758 0.86779 0.94445 1.21697 0.97456 0.96008 1.00435
1.20683 0.89629 0.90880 0.96264 1.42564 1.07413 1.28391 1.60669
1.19687 0.94665 1.01269 1.22196 0.90652 1.25586 0.95353 1.02786
1.03136 1.69811 0.99585 1.41522 1.51092 0.85061 0.77693 0.79085
0.77857 1.19102 1.21950 1.21872 1.21755 0.95413 0.90125 0.92406
1.20708 1.04819 1.03985 0.86089 0.87792 0.91912 0.93408 0.87928
0.85874 0.89790 0.89164 0.90372 0.75180 0.91515 0.91771 0.90937
0.90734 0.95808 0.95960 0.79268 0.93923 0.87712 0.87696 0.90474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.23 10.24 71.98 0.74 -0.49 16
2 C 0.11 1.04 6.93 86.38 0.60 1.64 16
3 N -0.35 -6.46 3.58 -332.99 -1.19 -7.65 16
4 N -0.32 -7.62 12.50 -46.67 -0.58 -8.20 16
5 C 0.10 2.46 7.26 43.52 0.32 2.78 16
6 C -0.08 -1.49 10.28 71.24 0.73 -0.75 16
7 C -0.32 -7.77 5.88 -20.15 -0.12 -7.89 16
8 C 0.60 16.72 6.97 86.66 0.60 17.33 16
9 O -0.58 -20.67 17.11 -4.04 -0.07 -20.74 16
10 N -0.71 -16.78 5.55 -466.36 -2.59 -19.37 16
11 C 0.13 3.53 5.67 86.38 0.49 4.02 16
12 C -0.12 -3.47 5.44 30.59 0.17 -3.30 16
13 C 0.15 5.96 6.26 86.38 0.54 6.50 16
14 N -0.75 -37.95 5.60 -343.44 -1.92 -39.88 16
15 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16
16 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16
17 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16
18 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16
19 Si 0.97 46.18 29.55 68.60 2.03 48.20 16
20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16
21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16
22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16
23 C 0.14 2.61 7.01 42.14 0.30 2.91 16
24 C -0.10 -1.19 9.93 71.24 0.71 -0.48 16
25 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16
26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16
27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16
28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16
29 H 0.12 0.42 7.02 -2.38 -0.02 0.40 16
30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
31 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16
32 H 0.08 1.50 8.01 -2.39 -0.02 1.48 16
33 H 0.41 8.11 8.46 -92.71 -0.78 7.32 16
34 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16
35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
37 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16
38 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16
39 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16
40 H 0.38 19.97 7.67 -92.71 -0.71 19.26 16
41 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16
42 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16
43 H 0.10 0.66 7.05 -2.38 -0.02 0.64 16
44 H 0.08 1.19 7.96 -2.39 -0.02 1.17 16
Total: -1.00 -76.41 373.79 1.84 -74.57
By element:
Atomic # 1 Polarization: 27.16 SS G_CDS: -0.49 Total: 26.67 kcal
Atomic # 6 Polarization: -1.09 SS G_CDS: 6.38 Total: 5.29 kcal
Atomic # 7 Polarization: -127.99 SS G_CDS: -6.01 Total: -134.00 kcal
Atomic # 8 Polarization: -20.67 SS G_CDS: -0.07 Total: -20.74 kcal
Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal
Total: -76.41 1.84 -74.57 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001168540098.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.386 kcal
(2) G-P(sol) polarization free energy of solvation -76.409 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.977 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.813 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds