Wall clock time and date at job start Tue Mar 31 2020 03:35:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08998 * 109.47376 * 2 1
4 4 C 1.53004 * 109.47258 * 120.00280 * 2 1 3
5 5 C 1.53003 * 109.46915 * 184.99504 * 4 2 1
6 6 C 1.53004 * 109.46915 * 179.97438 * 5 4 2
7 7 C 1.52994 * 109.47028 * 180.02562 * 6 5 4
8 8 N 1.46502 * 109.46987 * 180.02562 * 7 6 5
9 9 C 1.36941 * 119.99956 * 179.97438 * 8 7 6
10 10 H 1.08001 * 120.00080 * 0.02562 * 9 8 7
11 11 C 1.38812 * 119.99995 * 179.97438 * 9 8 7
12 12 N 1.31619 * 119.99676 * 359.97438 * 11 9 8
13 13 Si 1.86799 * 119.99781 * 180.02562 * 11 9 8
14 14 H 1.48497 * 109.47438 * 0.02562 * 13 11 9
15 15 H 1.48499 * 109.46762 * 120.00473 * 13 11 9
16 16 H 1.48500 * 109.46945 * 239.99660 * 13 11 9
17 17 N 1.46500 * 109.46712 * 239.99969 * 2 1 3
18 18 C 1.34781 * 119.99790 * 85.00192 * 17 2 1
19 19 O 1.21281 * 119.99862 * 0.02562 * 18 17 2
20 20 C 1.50701 * 120.00034 * 179.97438 * 18 17 2
21 21 N 1.46502 * 109.47241 * 180.02562 * 20 18 17
22 22 C 1.34948 * 126.03993 * 124.99420 * 21 20 18
23 23 C 1.35315 * 107.74520 * 179.97438 * 22 21 20
24 24 C 1.39870 * 107.92205 * 0.02562 * 23 22 21
25 25 N 1.30839 * 108.19862 * 359.97438 * 24 23 22
26 26 H 1.09005 * 109.46854 * 299.99894 * 1 2 3
27 27 H 1.08996 * 109.47315 * 59.99442 * 1 2 3
28 28 H 1.08998 * 109.47376 * 179.97438 * 1 2 3
29 29 H 1.08996 * 109.46930 * 305.00179 * 4 2 1
30 30 H 1.09001 * 109.46817 * 64.99573 * 4 2 1
31 31 H 1.08996 * 109.47168 * 299.99847 * 5 4 2
32 32 H 1.08999 * 109.46855 * 60.00606 * 5 4 2
33 33 H 1.09003 * 109.46942 * 300.00283 * 6 5 4
34 34 H 1.09001 * 109.46817 * 60.00069 * 6 5 4
35 35 H 1.09003 * 109.47396 * 299.99890 * 7 6 5
36 36 H 1.09001 * 109.47359 * 60.00286 * 7 6 5
37 37 H 0.96999 * 119.99820 * 359.97438 * 8 7 6
38 38 H 0.97009 * 119.99463 * 179.97438 * 12 11 9
39 39 H 0.96998 * 120.00250 * 264.99529 * 17 2 1
40 40 H 1.08994 * 109.47031 * 59.99996 * 20 18 17
41 41 H 1.09001 * 109.47021 * 299.99528 * 20 18 17
42 42 H 1.08007 * 126.12251 * 0.27272 * 22 21 20
43 43 H 1.08001 * 126.03475 * 179.97438 * 23 22 21
44 44 H 1.07997 * 125.89701 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5649 -0.6134 1.3135
6 6 4.0749 -1.3342 2.5631
7 6 5.5996 -1.2258 2.6278
8 7 6.0880 -1.9164 3.8239
9 6 7.4301 -1.9529 4.0935
10 1 8.1285 -1.4721 3.4246
11 6 7.8928 -2.6068 5.2271
12 7 7.0414 -3.1914 6.0431
13 14 9.7235 -2.6559 5.5952
14 1 10.4619 -1.9280 4.5322
15 1 9.9819 -2.0106 6.9075
16 1 10.1819 -4.0677 5.6392
17 7 2.0182 -0.6906 -1.1962
18 6 2.1469 -0.0182 -2.3572
19 8 1.8590 1.1587 -2.4114
20 6 2.6497 -0.7285 -3.5876
21 7 2.6994 0.2131 -4.7089
22 6 3.7799 0.4841 -5.4707
23 6 3.4133 1.4024 -6.3944
24 6 2.0627 1.7034 -6.1898
25 7 1.6338 0.9908 -5.1798
26 1 -0.3633 0.5138 0.8900
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0276 -0.0005
29 1 1.6054 -0.2619 2.1369
30 1 1.7516 -1.7716 1.2055
31 1 3.9994 -1.0729 0.4258
32 1 3.8532 0.4368 1.3573
33 1 3.6403 -0.8743 3.4506
34 1 3.7864 -2.3845 2.5198
35 1 6.0346 -1.6854 1.7402
36 1 5.8877 -0.1754 2.6712
37 1 5.4606 -2.3479 4.4249
38 1 7.3649 -3.6488 6.8352
39 1 2.2490 -1.6318 -1.1527
40 1 1.9775 -1.5507 -3.8326
41 1 3.6491 -1.1202 -3.3981
42 1 4.7601 0.0431 -5.3653
43 1 4.0511 1.8284 -7.1548
44 1 1.4753 2.4025 -6.7665
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001169158131.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:35:41
Heat of formation + Delta-G solvation = 39.944221 kcal
Electronic energy + Delta-G solvation = -22616.246926 eV
Core-core repulsion = 19184.378439 eV
Total energy + Delta-G solvation = -3431.868488 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.41930 -39.93761 -37.06343 -35.30613 -33.70419 -33.24709 -31.60812 -30.40436
-30.20965 -27.64450 -27.47914 -24.27789 -22.64120 -21.77246 -21.32456 -20.88133
-20.68975 -20.55227 -17.66875 -17.59062 -17.02273 -16.36219 -15.86088 -15.08510
-14.90939 -14.74940 -14.42805 -14.11371 -13.75080 -13.69301 -13.57199 -13.17763
-13.13719 -12.98685 -12.93385 -12.51226 -12.37602 -11.80979 -11.50497 -11.31106
-11.03393 -10.85701 -10.84091 -10.75113 -10.44112 -10.36660 -10.30175 -9.99117
-9.69703 -9.56014 -9.32155 -8.88427 -8.83538 -6.92528 -5.77623 -3.06117
1.62804 2.10483 2.29027 2.68253 2.88816 3.42110 3.47594 3.50044
4.15426 4.31678 4.50329 4.56342 4.60476 4.63587 4.81541 4.86414
4.93207 5.21621 5.31042 5.36446 5.41666 5.52125 5.52924 5.57478
5.65266 5.74301 5.77960 5.85189 5.92502 6.06562 6.15863 6.26196
6.31100 6.35262 6.41256 6.42581 6.67181 6.86103 6.90141 7.17898
7.49397 7.69294 7.91148 8.41781 9.52575 10.11627 10.46099 11.45513
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.019060 B = 0.002352 C = 0.002133
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1468.661933 B =11902.286920 C =13121.665065
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.143 3.857
3 H 0.088 0.912
4 C -0.127 4.127
5 C -0.114 4.114
6 C -0.126 4.126
7 C 0.152 3.848
8 N -0.735 5.735
9 C -0.238 4.238
10 H 0.070 0.930
11 C -0.017 4.017
12 N -0.934 5.934
13 Si 0.907 3.093
14 H -0.280 1.280
15 H -0.291 1.291
16 H -0.291 1.291
17 N -0.721 5.721
18 C 0.500 3.500
19 O -0.510 6.510
20 C 0.114 3.886
21 N -0.364 5.364
22 C 0.052 3.948
23 C -0.272 4.272
24 C 0.038 3.962
25 N -0.269 5.269
26 H 0.066 0.934
27 H 0.059 0.941
28 H 0.057 0.943
29 H 0.080 0.920
30 H 0.069 0.931
31 H 0.059 0.941
32 H 0.061 0.939
33 H 0.061 0.939
34 H 0.060 0.940
35 H 0.015 0.985
36 H 0.016 0.984
37 H 0.383 0.617
38 H 0.254 0.746
39 H 0.401 0.599
40 H 0.114 0.886
41 H 0.126 0.874
42 H 0.174 0.826
43 H 0.147 0.853
44 H 0.182 0.818
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.865 4.374 -22.655 26.417
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.039 3.961
3 H 0.106 0.894
4 C -0.165 4.165
5 C -0.152 4.152
6 C -0.164 4.164
7 C 0.025 3.975
8 N -0.379 5.379
9 C -0.370 4.370
10 H 0.088 0.912
11 C -0.212 4.212
12 N -0.583 5.583
13 Si 0.739 3.261
14 H -0.206 1.206
15 H -0.218 1.218
16 H -0.218 1.218
17 N -0.374 5.374
18 C 0.283 3.717
19 O -0.384 6.384
20 C -0.012 4.012
21 N -0.147 5.147
22 C -0.093 4.093
23 C -0.301 4.301
24 C -0.149 4.149
25 N -0.089 5.089
26 H 0.085 0.915
27 H 0.078 0.922
28 H 0.076 0.924
29 H 0.099 0.901
30 H 0.088 0.912
31 H 0.078 0.922
32 H 0.080 0.920
33 H 0.080 0.920
34 H 0.079 0.921
35 H 0.033 0.967
36 H 0.034 0.966
37 H 0.217 0.783
38 H 0.064 0.936
39 H 0.236 0.764
40 H 0.131 0.869
41 H 0.144 0.856
42 H 0.191 0.809
43 H 0.165 0.835
44 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -13.891 4.898 -21.844 26.346
hybrid contribution 1.735 -0.526 0.044 1.813
sum -12.156 4.372 -21.800 25.340
Atomic orbital electron populations
1.22174 0.95263 1.02124 1.02600 1.21052 0.93817 0.97658 0.83551
0.89384 1.21947 0.96863 1.00972 0.96694 1.21518 0.93940 1.01100
0.98608 1.21731 0.97259 1.00274 0.97115 1.20645 0.90990 0.95320
0.90552 1.42402 1.05364 1.64953 1.25211 1.19294 0.83907 1.28313
1.05439 0.91186 1.24762 0.97784 1.01000 0.97697 1.69677 1.32686
1.40852 1.15106 0.86104 0.85016 0.77221 0.77795 1.20560 1.21836
1.21844 1.46039 1.67748 1.14153 1.09505 1.20486 0.78839 0.87898
0.84451 1.90795 1.48016 1.15406 1.84186 1.21492 1.05327 0.90733
0.83620 1.48071 1.07954 1.33639 1.25004 1.22575 0.93179 0.99711
0.93789 1.21503 0.96885 1.05896 1.05815 1.23925 0.95336 0.99669
0.95939 1.77480 1.10308 1.08107 1.13010 0.91455 0.92224 0.92436
0.90111 0.91248 0.92210 0.92018 0.92022 0.92093 0.96681 0.96595
0.78341 0.93576 0.76429 0.86851 0.85582 0.80857 0.83491 0.80129
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16
2 C 0.14 1.34 2.57 -67.93 -0.17 1.16 16
3 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16
4 C -0.13 -1.16 4.75 -26.73 -0.13 -1.29 16
5 C -0.11 -1.32 5.10 -26.73 -0.14 -1.45 16
6 C -0.13 -1.93 5.33 -26.73 -0.14 -2.07 16
7 C 0.15 3.07 6.26 -4.04 -0.03 3.05 16
8 N -0.74 -18.99 5.60 -59.91 -0.34 -19.33 16
9 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16
10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16
11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16
12 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16
13 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16
14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
17 N -0.72 -5.80 4.53 -53.80 -0.24 -6.05 16
18 C 0.50 5.12 7.82 -10.98 -0.09 5.03 16
19 O -0.51 -7.75 15.37 5.56 0.09 -7.66 16
20 C 0.11 0.81 6.99 -5.19 -0.04 0.77 16
21 N -0.36 -3.72 3.40 -62.54 -0.21 -3.94 16
22 C 0.05 0.44 11.45 -17.22 -0.20 0.24 16
23 C -0.27 -2.37 10.80 -40.01 -0.43 -2.80 16
24 C 0.04 0.39 12.03 -17.36 -0.21 0.18 16
25 N -0.27 -3.42 11.64 30.62 0.36 -3.06 16
26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16
29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
31 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16
32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16
34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
35 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16
36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
37 H 0.38 10.32 7.67 -40.82 -0.31 10.01 16
38 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16
39 H 0.40 2.14 8.60 -40.82 -0.35 1.78 16
40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16
41 H 0.13 0.46 8.07 -51.93 -0.42 0.04 16
42 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16
43 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16
44 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16
LS Contribution 372.11 15.07 5.61 5.61
Total: -1.00 -37.37 372.11 -7.85 -45.22
By element:
Atomic # 1 Polarization: 12.62 SS G_CDS: -7.34 Total: 5.28 kcal
Atomic # 6 Polarization: -4.33 SS G_CDS: -1.46 Total: -5.79 kcal
Atomic # 7 Polarization: -60.45 SS G_CDS: 0.29 Total: -60.16 kcal
Atomic # 8 Polarization: -7.75 SS G_CDS: 0.09 Total: -7.66 kcal
Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -37.37 -7.85 -45.22 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169158131.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.164 kcal
(2) G-P(sol) polarization free energy of solvation -37.374 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.791 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.220 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.944 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds