Wall clock time and date at job start Tue Mar 31 2020 03:35:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08998 * 109.47376 * 2 1
4 4 C 1.53004 * 109.47258 * 120.00280 * 2 1 3
5 5 C 1.53003 * 109.46915 * 184.99504 * 4 2 1
6 6 C 1.53004 * 109.46915 * 179.97438 * 5 4 2
7 7 C 1.52994 * 109.47028 * 180.02562 * 6 5 4
8 8 N 1.46502 * 109.46987 * 180.02562 * 7 6 5
9 9 C 1.36941 * 119.99956 * 179.97438 * 8 7 6
10 10 H 1.08001 * 120.00080 * 0.02562 * 9 8 7
11 11 C 1.38812 * 119.99995 * 179.97438 * 9 8 7
12 12 N 1.31619 * 119.99676 * 359.97438 * 11 9 8
13 13 Si 1.86799 * 119.99781 * 180.02562 * 11 9 8
14 14 H 1.48497 * 109.47438 * 0.02562 * 13 11 9
15 15 H 1.48499 * 109.46762 * 120.00473 * 13 11 9
16 16 H 1.48500 * 109.46945 * 239.99660 * 13 11 9
17 17 N 1.46500 * 109.46712 * 239.99969 * 2 1 3
18 18 C 1.34781 * 119.99790 * 85.00192 * 17 2 1
19 19 O 1.21281 * 119.99862 * 0.02562 * 18 17 2
20 20 C 1.50701 * 120.00034 * 179.97438 * 18 17 2
21 21 N 1.46502 * 109.47241 * 180.02562 * 20 18 17
22 22 C 1.34948 * 126.03993 * 124.99420 * 21 20 18
23 23 C 1.35315 * 107.74520 * 179.97438 * 22 21 20
24 24 C 1.39870 * 107.92205 * 0.02562 * 23 22 21
25 25 N 1.30839 * 108.19862 * 359.97438 * 24 23 22
26 26 H 1.09005 * 109.46854 * 299.99894 * 1 2 3
27 27 H 1.08996 * 109.47315 * 59.99442 * 1 2 3
28 28 H 1.08998 * 109.47376 * 179.97438 * 1 2 3
29 29 H 1.08996 * 109.46930 * 305.00179 * 4 2 1
30 30 H 1.09001 * 109.46817 * 64.99573 * 4 2 1
31 31 H 1.08996 * 109.47168 * 299.99847 * 5 4 2
32 32 H 1.08999 * 109.46855 * 60.00606 * 5 4 2
33 33 H 1.09003 * 109.46942 * 300.00283 * 6 5 4
34 34 H 1.09001 * 109.46817 * 60.00069 * 6 5 4
35 35 H 1.09003 * 109.47396 * 299.99890 * 7 6 5
36 36 H 1.09001 * 109.47359 * 60.00286 * 7 6 5
37 37 H 0.96999 * 119.99820 * 359.97438 * 8 7 6
38 38 H 0.97009 * 119.99463 * 179.97438 * 12 11 9
39 39 H 0.96998 * 120.00250 * 264.99529 * 17 2 1
40 40 H 1.08994 * 109.47031 * 59.99996 * 20 18 17
41 41 H 1.09001 * 109.47021 * 299.99528 * 20 18 17
42 42 H 1.08007 * 126.12251 * 0.27272 * 22 21 20
43 43 H 1.08001 * 126.03475 * 179.97438 * 23 22 21
44 44 H 1.07997 * 125.89701 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5649 -0.6134 1.3135
6 6 4.0749 -1.3342 2.5631
7 6 5.5996 -1.2258 2.6278
8 7 6.0880 -1.9164 3.8239
9 6 7.4301 -1.9529 4.0935
10 1 8.1285 -1.4721 3.4246
11 6 7.8928 -2.6068 5.2271
12 7 7.0414 -3.1914 6.0431
13 14 9.7235 -2.6559 5.5952
14 1 10.4619 -1.9280 4.5322
15 1 9.9819 -2.0106 6.9075
16 1 10.1819 -4.0677 5.6392
17 7 2.0182 -0.6906 -1.1962
18 6 2.1469 -0.0182 -2.3572
19 8 1.8590 1.1587 -2.4114
20 6 2.6497 -0.7285 -3.5876
21 7 2.6994 0.2131 -4.7089
22 6 3.7799 0.4841 -5.4707
23 6 3.4133 1.4024 -6.3944
24 6 2.0627 1.7034 -6.1898
25 7 1.6338 0.9908 -5.1798
26 1 -0.3633 0.5138 0.8900
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0276 -0.0005
29 1 1.6054 -0.2619 2.1369
30 1 1.7516 -1.7716 1.2055
31 1 3.9994 -1.0729 0.4258
32 1 3.8532 0.4368 1.3573
33 1 3.6403 -0.8743 3.4506
34 1 3.7864 -2.3845 2.5198
35 1 6.0346 -1.6854 1.7402
36 1 5.8877 -0.1754 2.6712
37 1 5.4606 -2.3479 4.4249
38 1 7.3649 -3.6488 6.8352
39 1 2.2490 -1.6318 -1.1527
40 1 1.9775 -1.5507 -3.8326
41 1 3.6491 -1.1202 -3.3981
42 1 4.7601 0.0431 -5.3653
43 1 4.0511 1.8284 -7.1548
44 1 1.4753 2.4025 -6.7665
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001169158131.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:35:41
Heat of formation + Delta-G solvation = 13.617746 kcal
Electronic energy + Delta-G solvation = -22617.388528 eV
Core-core repulsion = 19184.378439 eV
Total energy + Delta-G solvation = -3433.010089 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-42.08079 -40.71837 -38.06401 -36.83598 -34.79811 -34.32139 -32.94231 -31.70988
-30.92246 -28.83762 -28.27329 -25.93745 -23.89963 -22.82615 -22.03667 -21.95643
-21.62695 -21.26575 -19.13311 -18.35453 -18.25219 -17.13019 -16.70777 -16.53884
-16.18522 -15.68845 -15.40362 -15.29050 -15.15224 -14.69296 -14.42803 -14.33559
-14.20726 -14.06136 -13.62536 -13.31864 -13.08363 -13.04532 -12.90467 -12.86877
-12.47488 -12.28253 -12.11405 -11.89525 -11.82535 -11.56042 -11.49043 -11.40519
-11.12521 -10.95370 -10.28741 -10.10499 -9.48791 -9.01988 -7.97431 -5.26595
0.97977 1.46573 1.47681 1.54242 1.55570 1.57890 2.01238 2.22372
2.54736 3.36194 3.55058 3.65340 3.80431 4.02270 4.05299 4.08591
4.14325 4.17245 4.26547 4.33795 4.41046 4.59480 4.63731 4.72739
4.76961 4.87138 4.91633 4.92959 4.97925 5.01603 5.11230 5.17783
5.25741 5.30098 5.43989 5.45845 5.53100 5.57032 5.75485 6.11435
6.25844 6.54430 6.81197 7.23099 7.31417 8.08384 8.31242 9.26396
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.019060 B = 0.002352 C = 0.002133
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1468.661933 B =11902.286920 C =13121.665065
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.147 3.853
3 H 0.061 0.939
4 C -0.115 4.115
5 C -0.104 4.104
6 C -0.113 4.113
7 C 0.148 3.852
8 N -0.750 5.750
9 C -0.248 4.248
10 H 0.074 0.926
11 C -0.078 4.078
12 N -0.970 5.970
13 Si 0.976 3.024
14 H -0.266 1.266
15 H -0.293 1.293
16 H -0.290 1.290
17 N -0.708 5.708
18 C 0.496 3.504
19 O -0.568 6.568
20 C 0.111 3.889
21 N -0.374 5.374
22 C 0.053 3.947
23 C -0.286 4.286
24 C 0.025 3.975
25 N -0.323 5.323
26 H 0.073 0.927
27 H 0.036 0.964
28 H 0.073 0.927
29 H 0.082 0.918
30 H 0.088 0.912
31 H 0.072 0.928
32 H 0.051 0.949
33 H 0.054 0.946
34 H 0.065 0.935
35 H 0.021 0.979
36 H 0.011 0.989
37 H 0.374 0.626
38 H 0.252 0.748
39 H 0.418 0.582
40 H 0.137 0.863
41 H 0.166 0.834
42 H 0.211 0.789
43 H 0.168 0.832
44 H 0.198 0.802
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.961 3.348 -23.679 26.739
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.043 3.957
3 H 0.080 0.920
4 C -0.153 4.153
5 C -0.142 4.142
6 C -0.151 4.151
7 C 0.022 3.978
8 N -0.393 5.393
9 C -0.379 4.379
10 H 0.092 0.908
11 C -0.271 4.271
12 N -0.620 5.620
13 Si 0.804 3.196
14 H -0.191 1.191
15 H -0.220 1.220
16 H -0.217 1.217
17 N -0.362 5.362
18 C 0.281 3.719
19 O -0.445 6.445
20 C -0.013 4.013
21 N -0.157 5.157
22 C -0.092 4.092
23 C -0.315 4.315
24 C -0.161 4.161
25 N -0.144 5.144
26 H 0.092 0.908
27 H 0.055 0.945
28 H 0.092 0.908
29 H 0.101 0.899
30 H 0.106 0.894
31 H 0.091 0.909
32 H 0.070 0.930
33 H 0.073 0.927
34 H 0.084 0.916
35 H 0.039 0.961
36 H 0.029 0.971
37 H 0.206 0.794
38 H 0.061 0.939
39 H 0.256 0.744
40 H 0.155 0.845
41 H 0.184 0.816
42 H 0.228 0.772
43 H 0.185 0.815
44 H 0.214 0.786
Dipole moment (debyes) X Y Z Total
from point charges -12.990 3.854 -22.898 26.607
hybrid contribution 1.447 -0.182 0.334 1.497
sum -11.542 3.671 -22.564 25.610
Atomic orbital electron populations
1.22107 0.94717 1.02881 1.01830 1.20892 0.94158 0.96530 0.84135
0.92030 1.21835 0.94833 1.02093 0.96559 1.21420 0.95647 0.99997
0.97130 1.21605 0.93733 1.01049 0.98691 1.20866 0.94248 0.94179
0.88546 1.42658 1.04541 1.65360 1.26714 1.19689 0.85329 1.27550
1.05368 0.90799 1.25623 1.02283 1.01301 0.97846 1.69826 1.34619
1.42022 1.15582 0.85042 0.79846 0.77113 0.77571 1.19059 1.22003
1.21705 1.45939 1.66758 1.14825 1.08652 1.21096 0.77845 0.87337
0.85583 1.90776 1.50646 1.18002 1.85126 1.21836 1.08038 0.90185
0.81281 1.48328 1.07863 1.33815 1.25706 1.23252 0.94032 0.99079
0.92857 1.21877 0.96566 1.06320 1.06739 1.24385 0.96531 0.99603
0.95594 1.77391 1.12486 1.09988 1.14542 0.90799 0.94466 0.90827
0.89913 0.89354 0.90926 0.93018 0.92743 0.91614 0.96054 0.97124
0.79432 0.93917 0.74443 0.84503 0.81612 0.77198 0.81466 0.78554
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.61 9.48 71.98 0.68 -1.93 16
2 C 0.15 2.58 2.57 44.99 0.12 2.69 16
3 H 0.06 1.44 7.58 -2.39 -0.02 1.42 16
4 C -0.12 -1.85 4.75 30.60 0.15 -1.70 16
5 C -0.10 -2.20 5.10 30.60 0.16 -2.04 16
6 C -0.11 -3.29 5.33 30.59 0.16 -3.12 16
7 C 0.15 5.81 6.26 86.38 0.54 6.35 16
8 N -0.75 -38.57 5.60 -343.45 -1.92 -40.49 16
9 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16
10 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16
11 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16
12 N -0.97 -59.49 13.06 21.65 0.28 -59.20 16
13 Si 0.98 46.06 29.55 68.60 2.03 48.09 16
14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16
15 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16
16 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16
17 N -0.71 -10.06 4.53 -442.52 -2.00 -12.06 16
18 C 0.50 9.66 7.82 87.66 0.69 10.35 16
19 O -0.57 -17.62 15.37 -3.03 -0.05 -17.67 16
20 C 0.11 1.32 6.99 85.63 0.60 1.92 16
21 N -0.37 -7.20 3.40 -351.79 -1.20 -8.39 16
22 C 0.05 0.78 11.45 83.54 0.96 1.74 16
23 C -0.29 -4.67 10.80 21.99 0.24 -4.43 16
24 C 0.03 0.52 12.03 85.24 1.03 1.54 16
25 N -0.32 -8.31 11.64 -57.02 -0.66 -8.98 16
26 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16
27 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16
28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16
31 H 0.07 1.36 7.75 -2.39 -0.02 1.34 16
32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16
33 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16
34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
35 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16
36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16
37 H 0.37 20.26 7.67 -92.71 -0.71 19.55 16
38 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16
39 H 0.42 3.11 8.60 -92.71 -0.80 2.31 16
40 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16
41 H 0.17 0.55 8.07 -2.39 -0.02 0.53 16
42 H 0.21 1.25 8.06 -2.91 -0.02 1.23 16
43 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16
44 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16
Total: -1.00 -82.88 372.11 2.57 -80.31
By element:
Atomic # 1 Polarization: 24.79 SS G_CDS: -0.52 Total: 24.27 kcal
Atomic # 6 Polarization: -12.48 SS G_CDS: 6.61 Total: -5.87 kcal
Atomic # 7 Polarization: -123.62 SS G_CDS: -5.51 Total: -129.13 kcal
Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.67 kcal
Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal
Total: -82.88 2.57 -80.31 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169158131.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.927 kcal
(2) G-P(sol) polarization free energy of solvation -82.877 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.050 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.309 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.618 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds