Wall clock time and date at job start Tue Mar 31 2020 03:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 109.46740 * 2 1 4 4 C 1.53000 * 109.47241 * 119.99579 * 2 1 3 5 5 C 1.50706 * 109.47116 * 295.00069 * 4 2 1 6 6 C 1.39862 * 126.04094 * 269.68901 * 5 4 2 7 7 N 1.30842 * 108.19992 * 179.81747 * 6 5 4 8 8 N 1.40084 * 108.20663 * 0.44091 * 7 6 5 9 9 C 1.46498 * 126.03507 * 179.69433 * 8 7 6 10 10 C 1.34950 * 107.92381 * 359.71898 * 8 7 6 11 11 C 1.50697 * 109.47580 * 239.99887 * 2 1 3 12 12 O 1.21277 * 120.00199 * 240.00272 * 11 2 1 13 13 N 1.34782 * 119.99853 * 59.99651 * 11 2 1 14 14 C 1.46496 * 119.99684 * 180.02562 * 13 11 2 15 15 C 1.53009 * 109.46790 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46900 * 179.97438 * 15 14 13 17 17 N 1.46496 * 109.47063 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99990 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00163 * 0.02562 * 18 17 16 20 20 C 1.38821 * 119.99841 * 179.97438 * 18 17 16 21 21 N 1.31612 * 119.99604 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99976 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47228 * 89.99893 * 22 20 18 24 24 H 1.48503 * 109.46971 * 210.00081 * 22 20 18 25 25 H 1.48497 * 109.46958 * 329.99715 * 22 20 18 26 26 H 1.08999 * 109.47060 * 60.00213 * 1 2 3 27 27 H 1.08997 * 109.46631 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47215 * 300.00106 * 1 2 3 29 29 H 1.09000 * 109.46884 * 175.00802 * 4 2 1 30 30 H 1.09000 * 109.46955 * 55.00117 * 4 2 1 31 31 H 1.07995 * 125.90192 * 0.02562 * 6 5 4 32 32 H 1.09001 * 109.47210 * 270.02264 * 9 8 7 33 33 H 1.08992 * 109.47312 * 30.02933 * 9 8 7 34 34 H 1.09004 * 109.46481 * 150.02918 * 9 8 7 35 35 H 1.07994 * 126.12639 * 180.02562 * 10 8 7 36 36 H 0.97002 * 119.99904 * 359.97438 * 13 11 2 37 37 H 1.08998 * 109.47168 * 299.99423 * 14 13 11 38 38 H 1.08993 * 109.47446 * 60.00055 * 14 13 11 39 39 H 1.08998 * 109.46909 * 299.99722 * 15 14 13 40 40 H 1.09000 * 109.46815 * 60.00217 * 15 14 13 41 41 H 1.09003 * 109.47157 * 300.00167 * 16 15 14 42 42 H 1.08997 * 109.47175 * 59.99766 * 16 15 14 43 43 H 0.97006 * 120.00212 * 0.02562 * 17 16 15 44 44 H 0.97000 * 119.99619 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0573 2.4766 6 6 2.3927 1.0628 3.0934 7 7 1.7180 1.5031 4.1243 8 7 0.5187 0.7834 4.2022 9 6 -0.5259 0.9561 5.2147 10 6 0.4958 -0.0974 3.1800 11 6 2.0325 -0.7104 -1.2304 12 8 2.7297 -1.6964 -1.1191 13 7 1.7069 -0.2500 -2.4546 14 6 2.1948 -0.9409 -3.6506 15 6 1.6844 -0.2200 -4.9000 16 6 2.1945 -0.9412 -6.1492 17 7 1.7063 -0.2507 -7.3453 18 6 2.0377 -0.7182 -8.5891 19 1 2.6586 -1.5963 -8.6881 20 6 1.5746 -0.0641 -9.7225 21 7 1.8927 -0.5138 -10.9179 22 14 0.4999 1.4542 -9.5512 23 1 1.3579 2.6654 -9.5059 24 1 -0.4206 1.5428 -10.7131 25 1 -0.2919 1.3614 -8.2984 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1264 -0.7992 1.2056 30 1 1.6055 -1.7197 1.2952 31 1 3.3609 1.4173 2.7720 32 1 -0.3252 0.2976 6.0598 33 1 -0.5345 1.9916 5.5549 34 1 -1.4953 0.7075 4.7827 35 1 -0.2953 -0.7996 2.9622 36 1 1.1488 0.5384 -2.5436 37 1 3.2848 -0.9412 -3.6508 38 1 1.8312 -1.9684 -3.6505 39 1 0.5944 -0.2201 -4.8996 40 1 2.0477 0.8077 -4.9003 41 1 3.2846 -0.9408 -6.1493 42 1 1.8317 -1.9690 -6.1489 43 1 1.1488 0.5382 -7.2564 44 1 1.5694 -0.0565 -11.7099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169593755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:07 Heat of formation + Delta-G solvation = 39.050036 kcal Electronic energy + Delta-G solvation = -22407.497036 eV Core-core repulsion = 18975.589774 eV Total energy + Delta-G solvation = -3431.907262 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61126 -39.91611 -36.31119 -35.35700 -34.47106 -33.40013 -32.01342 -30.70628 -29.79146 -28.14265 -26.10496 -25.60487 -23.40237 -22.02095 -21.43092 -21.28032 -20.54853 -19.75630 -17.65756 -17.29958 -16.78647 -16.13526 -15.83726 -15.74668 -15.07820 -14.80002 -14.57202 -14.13231 -14.05035 -13.59159 -13.55862 -13.41931 -13.07272 -12.82138 -12.76891 -12.69947 -12.36343 -12.20425 -12.00496 -11.50134 -11.38746 -11.18384 -11.03642 -10.82426 -10.81324 -10.70676 -10.17244 -9.81450 -9.74214 -9.59659 -9.07424 -8.90782 -8.69685 -7.24879 -5.77379 -3.13387 1.51319 2.14609 2.42442 2.59937 3.16602 3.35678 3.38080 3.43904 4.11155 4.44562 4.49868 4.57942 4.64070 4.65660 4.71395 4.78527 4.92096 4.94582 5.12882 5.17646 5.20762 5.24179 5.41874 5.48269 5.52453 5.53335 5.59001 5.75980 5.82066 5.93369 5.94424 5.97118 6.00437 6.15314 6.30814 6.42335 6.62327 6.68809 6.71978 7.33417 7.44651 7.98961 8.17626 8.41459 9.20268 9.92362 10.11903 11.40992 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.034902 B = 0.002061 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.064540 B =13580.470580 C =14027.092001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 H 0.097 0.903 4 C -0.021 4.021 5 C -0.231 4.231 6 C 0.053 3.947 7 N -0.300 5.300 8 N -0.379 5.379 9 C 0.102 3.898 10 C 0.057 3.943 11 C 0.514 3.486 12 O -0.541 6.541 13 N -0.729 5.729 14 C 0.122 3.878 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.757 5.757 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.887 3.113 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.172 0.828 36 H 0.399 0.601 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.360 0.640 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 3.666 33.512 34.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 H 0.115 0.885 4 C -0.060 4.060 5 C -0.242 4.242 6 C -0.133 4.133 7 N -0.121 5.121 8 N -0.161 5.161 9 C -0.040 4.040 10 C -0.089 4.089 11 C 0.300 3.700 12 O -0.418 6.418 13 N -0.380 5.380 14 C -0.002 4.002 15 C -0.180 4.180 16 C 0.032 3.968 17 N -0.403 5.403 18 C -0.376 4.376 19 H 0.109 0.891 20 C -0.193 4.193 21 N -0.582 5.582 22 Si 0.717 3.283 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.200 0.800 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.189 0.811 36 H 0.233 0.767 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.193 0.807 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.749 3.636 34.498 35.162 hybrid contribution -1.140 0.959 -0.812 1.697 sum -6.889 4.595 33.686 34.689 Atomic orbital electron populations 1.21806 0.93137 1.02603 1.02549 1.21306 0.97543 1.00994 0.92837 0.88523 1.19665 1.01765 0.96945 0.87601 1.20081 0.96599 1.04807 1.02723 1.23854 1.00103 0.96063 0.93286 1.77372 0.94059 1.18924 1.21727 1.48469 1.16042 1.28684 1.22934 1.21851 0.87786 1.04229 0.90129 1.22367 1.00112 0.96185 0.90265 1.20664 0.80060 0.84609 0.84641 1.90706 1.37895 1.26354 1.86879 1.46109 1.53778 1.32189 1.05949 1.21330 0.99568 0.96436 0.82861 1.21993 1.01392 1.00322 0.94267 1.20503 0.96995 0.94873 0.84400 1.42686 1.62102 1.33224 1.02238 1.19082 1.26539 1.10330 0.81610 0.89137 1.24694 1.00492 0.98998 0.95078 1.69703 1.49761 1.41923 0.96764 0.86514 0.80785 0.84162 0.76838 1.21071 1.21709 1.20409 0.92243 0.92078 0.91504 0.90157 0.90722 0.80033 0.90787 0.89321 0.89474 0.81053 0.76666 0.91212 0.91261 0.91416 0.91384 0.95163 0.95228 0.80709 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.80 37.16 0.33 -0.60 16 2 C -0.11 -0.84 2.71 -91.77 -0.25 -1.09 16 3 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 4 C -0.02 -0.17 4.52 -27.88 -0.13 -0.30 16 5 C -0.23 -1.83 4.82 -105.05 -0.51 -2.34 16 6 C 0.05 0.46 11.96 -17.37 -0.21 0.25 16 7 N -0.30 -2.99 12.58 30.62 0.39 -2.60 16 8 N -0.38 -2.87 4.01 -68.17 -0.27 -3.14 16 9 C 0.10 0.36 11.47 59.85 0.69 1.05 16 10 C 0.06 0.39 10.03 -17.22 -0.17 0.21 16 11 C 0.51 5.85 7.15 -10.98 -0.08 5.77 16 12 O -0.54 -8.30 15.92 5.56 0.09 -8.21 16 13 N -0.73 -7.67 5.45 -60.30 -0.33 -8.00 16 14 C 0.12 1.55 5.67 -4.04 -0.02 1.53 16 15 C -0.14 -1.98 5.44 -26.73 -0.15 -2.12 16 16 C 0.16 3.03 6.26 -4.04 -0.03 3.00 16 17 N -0.76 -17.99 5.41 -59.91 -0.32 -18.31 16 18 C -0.25 -7.04 10.47 -15.05 -0.16 -7.20 16 19 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 20 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 21 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 22 Si 0.89 22.01 27.74 -169.99 -4.71 17.29 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 26 H 0.06 0.35 7.56 -51.93 -0.39 -0.04 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.39 6.42 -51.93 -0.33 0.06 16 29 H 0.08 0.75 7.96 -51.93 -0.41 0.33 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.40 3.23 7.89 -40.82 -0.32 2.91 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.36 8.24 5.53 -40.82 -0.23 8.01 16 44 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -36.47 366.16 -6.84 -43.32 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.20 Total: 4.69 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.77 Total: -1.83 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.23 Total: -60.76 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.47 -6.84 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169593755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.365 kcal (2) G-P(sol) polarization free energy of solvation -36.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds