Wall clock time and date at job start Tue Mar 31 2020 03:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 109.46740 * 2 1 4 4 C 1.53000 * 109.47241 * 119.99579 * 2 1 3 5 5 C 1.50706 * 109.47116 * 295.00069 * 4 2 1 6 6 C 1.39862 * 126.04094 * 269.68901 * 5 4 2 7 7 N 1.30842 * 108.19992 * 179.81747 * 6 5 4 8 8 N 1.40084 * 108.20663 * 0.44091 * 7 6 5 9 9 C 1.46498 * 126.03507 * 179.69433 * 8 7 6 10 10 C 1.34950 * 107.92381 * 359.71898 * 8 7 6 11 11 C 1.50697 * 109.47580 * 239.99887 * 2 1 3 12 12 O 1.21277 * 120.00199 * 240.00272 * 11 2 1 13 13 N 1.34782 * 119.99853 * 59.99651 * 11 2 1 14 14 C 1.46496 * 119.99684 * 180.02562 * 13 11 2 15 15 C 1.53009 * 109.46790 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46900 * 179.97438 * 15 14 13 17 17 N 1.46496 * 109.47063 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99990 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00163 * 0.02562 * 18 17 16 20 20 C 1.38821 * 119.99841 * 179.97438 * 18 17 16 21 21 N 1.31612 * 119.99604 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99976 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47228 * 89.99893 * 22 20 18 24 24 H 1.48503 * 109.46971 * 210.00081 * 22 20 18 25 25 H 1.48497 * 109.46958 * 329.99715 * 22 20 18 26 26 H 1.08999 * 109.47060 * 60.00213 * 1 2 3 27 27 H 1.08997 * 109.46631 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47215 * 300.00106 * 1 2 3 29 29 H 1.09000 * 109.46884 * 175.00802 * 4 2 1 30 30 H 1.09000 * 109.46955 * 55.00117 * 4 2 1 31 31 H 1.07995 * 125.90192 * 0.02562 * 6 5 4 32 32 H 1.09001 * 109.47210 * 270.02264 * 9 8 7 33 33 H 1.08992 * 109.47312 * 30.02933 * 9 8 7 34 34 H 1.09004 * 109.46481 * 150.02918 * 9 8 7 35 35 H 1.07994 * 126.12639 * 180.02562 * 10 8 7 36 36 H 0.97002 * 119.99904 * 359.97438 * 13 11 2 37 37 H 1.08998 * 109.47168 * 299.99423 * 14 13 11 38 38 H 1.08993 * 109.47446 * 60.00055 * 14 13 11 39 39 H 1.08998 * 109.46909 * 299.99722 * 15 14 13 40 40 H 1.09000 * 109.46815 * 60.00217 * 15 14 13 41 41 H 1.09003 * 109.47157 * 300.00167 * 16 15 14 42 42 H 1.08997 * 109.47175 * 59.99766 * 16 15 14 43 43 H 0.97006 * 120.00212 * 0.02562 * 17 16 15 44 44 H 0.97000 * 119.99619 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0573 2.4766 6 6 2.3927 1.0628 3.0934 7 7 1.7180 1.5031 4.1243 8 7 0.5187 0.7834 4.2022 9 6 -0.5259 0.9561 5.2147 10 6 0.4958 -0.0974 3.1800 11 6 2.0325 -0.7104 -1.2304 12 8 2.7297 -1.6964 -1.1191 13 7 1.7069 -0.2500 -2.4546 14 6 2.1948 -0.9409 -3.6506 15 6 1.6844 -0.2200 -4.9000 16 6 2.1945 -0.9412 -6.1492 17 7 1.7063 -0.2507 -7.3453 18 6 2.0377 -0.7182 -8.5891 19 1 2.6586 -1.5963 -8.6881 20 6 1.5746 -0.0641 -9.7225 21 7 1.8927 -0.5138 -10.9179 22 14 0.4999 1.4542 -9.5512 23 1 1.3579 2.6654 -9.5059 24 1 -0.4206 1.5428 -10.7131 25 1 -0.2919 1.3614 -8.2984 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1264 -0.7992 1.2056 30 1 1.6055 -1.7197 1.2952 31 1 3.3609 1.4173 2.7720 32 1 -0.3252 0.2976 6.0598 33 1 -0.5345 1.9916 5.5549 34 1 -1.4953 0.7075 4.7827 35 1 -0.2953 -0.7996 2.9622 36 1 1.1488 0.5384 -2.5436 37 1 3.2848 -0.9412 -3.6508 38 1 1.8312 -1.9684 -3.6505 39 1 0.5944 -0.2201 -4.8996 40 1 2.0477 0.8077 -4.9003 41 1 3.2846 -0.9408 -6.1493 42 1 1.8317 -1.9690 -6.1489 43 1 1.1488 0.5382 -7.2564 44 1 1.5694 -0.0565 -11.7099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169593755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:07 Heat of formation + Delta-G solvation = 12.543191 kcal Electronic energy + Delta-G solvation = -22408.646459 eV Core-core repulsion = 18975.589774 eV Total energy + Delta-G solvation = -3433.056685 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.16521 -40.82150 -37.67406 -36.14823 -35.87938 -34.00741 -33.72553 -31.87971 -30.86234 -28.61357 -27.19562 -26.49625 -24.62797 -23.38425 -22.66124 -21.95342 -21.26192 -20.56425 -19.60596 -18.09819 -17.43396 -17.12779 -16.83287 -16.50989 -16.23281 -15.99684 -15.63868 -15.31079 -14.96282 -14.80296 -14.70184 -14.13704 -13.98222 -13.77185 -13.73539 -13.51620 -13.17006 -13.16614 -12.87153 -12.79852 -12.52184 -12.49361 -12.07727 -12.05906 -12.00654 -11.96718 -11.80126 -11.41702 -10.97500 -10.71707 -10.32615 -10.04361 -9.31317 -9.25285 -8.02870 -5.37824 0.98535 1.38764 1.44216 1.51538 1.71309 1.73198 1.82103 2.29094 2.49572 3.28240 3.57264 3.66027 3.80887 4.00536 4.07894 4.09896 4.15513 4.26116 4.29800 4.37382 4.46221 4.55195 4.60189 4.69634 4.72678 4.73553 4.74526 4.90895 4.91878 4.98314 5.04609 5.25999 5.28451 5.30193 5.30736 5.42205 5.49595 5.73927 5.75051 6.18511 6.20647 6.61949 6.77311 7.07612 7.32013 7.82277 8.03279 9.18587 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.034902 B = 0.002061 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.064540 B =13580.470580 C =14027.092001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.110 0.890 4 C -0.013 4.013 5 C -0.243 4.243 6 C 0.042 3.958 7 N -0.338 5.338 8 N -0.382 5.382 9 C 0.092 3.908 10 C 0.065 3.935 11 C 0.513 3.487 12 O -0.586 6.586 13 N -0.718 5.718 14 C 0.130 3.870 15 C -0.122 4.122 16 C 0.153 3.847 17 N -0.758 5.758 18 C -0.243 4.243 19 H 0.052 0.948 20 C -0.068 4.068 21 N -0.985 5.985 22 Si 0.963 3.037 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.245 1.245 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.192 0.808 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.202 0.798 36 H 0.415 0.585 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.369 0.631 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 5.421 35.580 37.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.128 0.872 4 C -0.052 4.052 5 C -0.255 4.255 6 C -0.143 4.143 7 N -0.160 5.160 8 N -0.164 5.164 9 C -0.048 4.048 10 C -0.082 4.082 11 C 0.300 3.700 12 O -0.466 6.466 13 N -0.370 5.370 14 C 0.006 3.994 15 C -0.160 4.160 16 C 0.026 3.974 17 N -0.404 5.404 18 C -0.374 4.374 19 H 0.071 0.929 20 C -0.259 4.259 21 N -0.635 5.635 22 Si 0.789 3.211 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.169 1.169 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.209 0.791 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.133 0.867 35 H 0.218 0.782 36 H 0.252 0.748 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.202 0.798 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.143 5.421 36.634 37.918 hybrid contribution -0.342 0.295 -1.412 1.482 sum -8.484 5.716 35.223 36.678 Atomic orbital electron populations 1.21794 0.91428 1.02819 1.03581 1.21283 0.98754 1.00908 0.90676 0.87195 1.19523 1.00691 0.96827 0.88160 1.20047 0.97294 1.05118 1.03003 1.24123 1.00648 0.96306 0.93217 1.77312 0.95529 1.20526 1.22672 1.48801 1.15879 1.28208 1.23510 1.22171 0.88010 1.04588 0.90003 1.22815 1.00257 0.95775 0.89355 1.21283 0.79123 0.84021 0.85530 1.90692 1.39935 1.28478 1.87482 1.45961 1.53588 1.32403 1.05059 1.21064 0.98925 0.96109 0.83346 1.21760 1.02052 1.00252 0.91919 1.20669 0.96699 0.94991 0.84999 1.42649 1.62247 1.33698 1.01811 1.19058 1.25349 1.09013 0.83972 0.92949 1.25636 1.02685 1.03109 0.94476 1.69905 1.51729 1.44038 0.97819 0.85294 0.78712 0.79194 0.77870 1.20241 1.22284 1.16945 0.91205 0.92272 0.90467 0.91825 0.91292 0.79124 0.89877 0.89382 0.86671 0.78168 0.74836 0.92284 0.92189 0.89979 0.90007 0.95784 0.95780 0.79760 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.80 71.98 0.63 -0.72 16 2 C -0.09 -1.32 2.71 -11.54 -0.03 -1.35 16 3 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 4 C -0.01 -0.20 4.52 29.85 0.13 -0.07 16 5 C -0.24 -3.52 4.82 -20.14 -0.10 -3.62 16 6 C 0.04 0.70 11.96 85.23 1.02 1.72 16 7 N -0.34 -6.47 12.58 -57.03 -0.72 -7.19 16 8 N -0.38 -5.07 4.01 -369.57 -1.48 -6.55 16 9 C 0.09 0.45 11.47 127.77 1.47 1.91 16 10 C 0.06 0.73 10.03 83.54 0.84 1.57 16 11 C 0.51 10.91 7.15 87.66 0.63 11.54 16 12 O -0.59 -17.84 15.92 -3.02 -0.05 -17.88 16 13 N -0.72 -13.42 5.45 -463.06 -2.52 -15.95 16 14 C 0.13 3.10 5.67 86.38 0.49 3.59 16 15 C -0.12 -3.08 5.44 30.60 0.17 -2.91 16 16 C 0.15 5.64 6.26 86.38 0.54 6.18 16 17 N -0.76 -34.97 5.41 -343.45 -1.86 -36.83 16 18 C -0.24 -14.06 10.47 84.04 0.88 -13.18 16 19 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 20 C -0.07 -4.01 5.50 84.87 0.47 -3.54 16 21 N -0.98 -63.56 13.97 21.65 0.30 -63.26 16 22 Si 0.96 44.61 27.74 68.60 1.90 46.51 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.25 -9.94 6.52 99.48 0.65 -9.29 16 26 H 0.07 0.55 7.56 -2.39 -0.02 0.54 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.63 6.42 -2.39 -0.02 0.62 16 29 H 0.06 1.19 7.96 -2.39 -0.02 1.17 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.41 5.25 7.89 -92.71 -0.73 4.52 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.37 15.69 5.53 -92.70 -0.51 15.18 16 44 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -80.75 366.16 2.40 -78.35 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.31 Total: 21.67 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 7.13 Total: 1.13 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -6.28 Total: -129.77 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.05 Total: -17.88 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Total: -80.75 2.40 -78.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169593755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.889 kcal (2) G-P(sol) polarization free energy of solvation -80.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds